EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000012169 (Gene tree)
Gene ID: 100524536
Gene Symbol: -
Alias: -
Full Name: DEAD-box helicase 53
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 1893 bases
Position: chrX:19167022-19168914
Accession: 100524536
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000012954	KH_1	PF00013.29	2e-12	1	1
ENSSSCP00000012954	DEAD	PF00270.29	9.5e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000013311	-	1893	XM_021080573	ENSSSCP00000012954	630 (aa)	XP_020936232	F1SQ03

Gene Model

Click here to download ENSSSCG00000012169's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000012169's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000012169	-	64	38.991	ENSSSCG00000000176	DDX23	52	38.991
ENSSSCG00000012169	-	62	32.594	ENSSSCG00000005729	DDX31	62	31.729
ENSSSCG00000012169	-	61	40.000	ENSSSCG00000016913	DDX4	54	40.000
ENSSSCG00000012169	-	54	35.328	ENSSSCG00000025329	DDX49	72	35.328
ENSSSCG00000012169	-	70	43.820	ENSSSCG00000032092	DDX5	73	47.453
ENSSSCG00000012169	-	56	32.303	ENSSSCG00000017155	EIF4A3	85	32.303
ENSSSCG00000012169	-	93	71.695	ENSSSCG00000004287	-	96	68.730
ENSSSCG00000012169	-	70	33.108	ENSSSCG00000024444	DDX59	70	33.108
ENSSSCG00000012169	-	71	37.556	ENSSSCG00000017289	DDX42	55	37.333
ENSSSCG00000012169	-	61	38.958	ENSSSCG00000026430	DDX3Y	72	38.958
ENSSSCG00000012169	-	57	30.108	ENSSSCG00000015223	DDX25	98	30.108
ENSSSCG00000012169	-	62	36.683	ENSSSCG00000022915	DDX27	55	36.683
ENSSSCG00000012169	-	70	34.000	ENSSSCG00000021275	DDX52	74	34.000
ENSSSCG00000012169	-	57	31.593	ENSSSCG00000011803	EIF4A2	92	31.471
ENSSSCG00000012169	-	54	30.141	ENSSSCG00000002722	-	72	30.141
ENSSSCG00000012169	-	60	35.620	ENSSSCG00000033149	DDX47	82	35.620
ENSSSCG00000012169	-	59	31.436	ENSSSCG00000026038	DDX28	74	31.436
ENSSSCG00000012169	-	60	38.363	ENSSSCG00000032642	DDX41	62	38.363
ENSSSCG00000012169	-	70	44.395	ENSSSCG00000000104	DDX17	87	44.652
ENSSSCG00000012169	-	61	39.250	ENSSSCG00000012252	DDX3X	61	38.710
ENSSSCG00000012169	-	61	31.795	ENSSSCG00000017957	EIF4A1	97	31.795
ENSSSCG00000012169	-	56	33.146	ENSSSCG00000015097	DDX6	72	33.146

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000012169	-	95	79.132	ENSAMEG00000019953	-	98	79.132	Ailuropoda_melanoleuca
ENSSSCG00000012169	-	96	77.025	ENSBTAG00000046635	-	96	77.181	Bos_taurus
ENSSSCG00000012169	-	60	80.840	ENSCAFG00020005312	-	82	80.628	Canis_lupus_dingo
ENSSSCG00000012169	-	97	77.288	ENSCHIG00000020582	-	99	77.288	Capra_hircus
ENSSSCG00000012169	-	99	67.223	ENSCPOG00000013960	-	91	70.909	Cavia_porcellus
ENSSSCG00000012169	-	95	70.310	ENSCLAG00000017424	-	91	70.310	Chinchilla_lanigera
ENSSSCG00000012169	-	100	76.984	ENSEASG00005001728	-	97	76.984	Equus_asinus_asinus
ENSSSCG00000012169	-	100	77.143	ENSECAG00000035665	-	100	77.143	Equus_caballus
ENSSSCG00000012169	-	100	76.984	ENSECAG00000037015	DDX53	100	76.984	Equus_caballus
ENSSSCG00000012169	-	79	71.774	ENSFDAG00000020660	-	97	71.774	Fukomys_damarensis
ENSSSCG00000012169	-	69	69.725	ENSFDAG00000018215	-	93	69.725	Fukomys_damarensis
ENSSSCG00000012169	-	98	75.447	ENSSTOG00000027719	-	79	76.884	Ictidomys_tridecemlineatus
ENSSSCG00000012169	-	100	75.397	ENSLAFG00000011531	-	99	75.397	Loxodonta_africana
ENSSSCG00000012169	-	94	80.168	ENSMPUG00000019441	-	98	79.967	Mustela_putorius_furo
ENSSSCG00000012169	-	100	71.272	ENSMLUG00000022321	-	99	71.429	Myotis_lucifugus
ENSSSCG00000012169	-	94	72.605	ENSMLUG00000022233	-	98	72.621	Myotis_lucifugus
ENSSSCG00000012169	-	100	72.684	ENSOCUG00000004437	-	100	72.300	Oryctolagus_cuniculus
ENSSSCG00000012169	-	94	73.356	ENSOGAG00000026282	-	94	73.154	Otolemur_garnettii
ENSSSCG00000012169	-	97	77.905	ENSOARG00000016525	-	100	77.905	Ovis_aries
ENSSSCG00000012169	-	99	76.389	ENSPPRG00000011327	-	99	75.957	Panthera_pardus
ENSSSCG00000012169	-	99	76.352	ENSPTIG00000001243	-	99	75.920	Panthera_tigris_altaica
ENSSSCG00000012169	-	100	75.397	ENSPVAG00000001484	-	99	75.556	Pteropus_vampyrus
ENSSSCG00000012169	-	59	51.715	ENSTBEG00000001513	-	97	51.451	Tupaia_belangeri
ENSSSCG00000012169	-	95	74.080	ENSTBEG00000014650	-	94	74.080	Tupaia_belangeri
ENSSSCG00000012169	-	100	72.785	ENSTTRG00000016514	-	99	72.785	Tursiops_truncatus
ENSSSCG00000012169	-	95	80.801	ENSUAMG00000000177	-	94	80.801	Ursus_americanus
ENSSSCG00000012169	-	59	87.399	ENSUMAG00000011448	-	84	87.399	Ursus_maritimus
ENSSSCG00000012169	-	100	80.317	ENSVPAG00000007860	-	99	80.317	Vicugna_pacos
ENSSSCG00000012169	-	96	77.944	ENSVVUG00000012789	-	97	78.130	Vulpes_vulpes