EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000012348 (Gene tree)
Gene ID: 100519003
Gene Symbol: -
Alias: -
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 2
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 7517 bases
Position: chrX:47862667-47870183
Accession: 100519003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000013142	Exo_endo_phos	PF03372.23	4.6e-21	1	1
ENSSSCP00000029465	Exo_endo_phos	PF03372.23	3.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000035798	-	2350	-	ENSSSCP00000029465	476 (aa)	-	K7GNL1
ENSSSCT00000013503	-	1687	XM_003135109	ENSSSCP00000013142	515 (aa)	XP_003135157	F1RUD3

Gene Model

Click here to download ENSSSCG00000012348's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000012348's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000012348	-	100	83.591	ENSG00000169188	APEX2	100	83.591	Homo_sapiens
ENSSSCG00000012348	-	99	46.491	ENSAPOG00000005805	apex2	99	47.018	Acanthochromis_polyacanthus
ENSSSCG00000012348	-	100	86.628	ENSAMEG00000003608	APEX2	100	86.628	Ailuropoda_melanoleuca
ENSSSCG00000012348	-	99	46.329	ENSACIG00000010000	apex2	99	46.329	Amphilophus_citrinellus
ENSSSCG00000012348	-	99	45.026	ENSAOCG00000021774	apex2	99	45.965	Amphiprion_ocellaris
ENSSSCG00000012348	-	99	45.026	ENSAPEG00000020890	apex2	93	45.965	Amphiprion_percula
ENSSSCG00000012348	-	99	45.111	ENSATEG00000023600	apex2	99	45.111	Anabas_testudineus
ENSSSCG00000012348	-	99	51.544	ENSACAG00000011201	APEX2	99	51.931	Anolis_carolinensis
ENSSSCG00000012348	-	100	83.591	ENSANAG00000021907	-	100	83.591	Aotus_nancymaae
ENSSSCG00000012348	-	97	73.200	ENSANAG00000020845	-	100	73.200	Aotus_nancymaae
ENSSSCG00000012348	-	99	45.115	ENSAMXG00000007422	apex2	99	45.648	Astyanax_mexicanus
ENSSSCG00000012348	-	100	88.544	ENSBTAG00000013177	APEX2	100	88.544	Bos_taurus
ENSSSCG00000012348	-	100	83.784	ENSCJAG00000016584	APEX2	100	83.784	Callithrix_jacchus
ENSSSCG00000012348	-	100	85.243	ENSCAFG00000014310	APEX2	100	85.243	Canis_familiaris
ENSSSCG00000012348	-	100	86.602	ENSCAFG00020013818	APEX2	100	86.602	Canis_lupus_dingo
ENSSSCG00000012348	-	100	87.767	ENSCHIG00000019916	APEX2	100	87.767	Capra_hircus
ENSSSCG00000012348	-	100	82.752	ENSTSYG00000005612	APEX2	100	82.752	Carlito_syrichta
ENSSSCG00000012348	-	100	75.728	ENSCPOG00000007265	APEX2	100	75.728	Cavia_porcellus
ENSSSCG00000012348	-	96	71.116	ENSCCAG00000025405	-	99	71.116	Cebus_capucinus
ENSSSCG00000012348	-	100	82.625	ENSCATG00000044854	APEX2	100	82.625	Cercocebus_atys
ENSSSCG00000012348	-	100	77.799	ENSCLAG00000017315	APEX2	100	77.799	Chinchilla_lanigera
ENSSSCG00000012348	-	100	82.625	ENSCSAG00000012124	APEX2	100	82.625	Chlorocebus_sabaeus
ENSSSCG00000012348	-	99	48.837	ENSCPBG00000016631	APEX2	99	50.097	Chrysemys_picta_bellii
ENSSSCG00000012348	-	99	39.587	ENSCSAVG00000006052	-	99	39.587	Ciona_savignyi
ENSSSCG00000012348	-	100	83.205	ENSCANG00000003053	APEX2	100	83.205	Colobus_angolensis_palliatus
ENSSSCG00000012348	-	100	78.764	ENSCGRG00001008132	Apex2	100	78.764	Cricetulus_griseus_chok1gshd
ENSSSCG00000012348	-	100	78.764	ENSCGRG00000009667	Apex2	100	78.764	Cricetulus_griseus_crigri
ENSSSCG00000012348	-	99	45.222	ENSCSEG00000019900	apex2	98	45.222	Cynoglossus_semilaevis
ENSSSCG00000012348	-	99	44.940	ENSCVAG00000021583	apex2	99	45.095	Cyprinodon_variegatus
ENSSSCG00000012348	-	99	47.090	ENSDARG00000008472	apex2	99	47.443	Danio_rerio
ENSSSCG00000012348	-	100	80.695	ENSDNOG00000038901	APEX2	100	80.695	Dasypus_novemcinctus
ENSSSCG00000012348	-	99	45.136	ENSEBUG00000015654	apex2	99	45.136	Eptatretus_burgeri
ENSSSCG00000012348	-	100	86.019	ENSEASG00005011694	APEX2	91	86.019	Equus_asinus_asinus
ENSSSCG00000012348	-	100	86.019	ENSECAG00000026921	APEX2	91	86.019	Equus_caballus
ENSSSCG00000012348	-	100	77.563	ENSEEUG00000013172	APEX2	100	77.563	Erinaceus_europaeus
ENSSSCG00000012348	-	99	43.486	ENSELUG00000021417	apex2	99	43.486	Esox_lucius
ENSSSCG00000012348	-	100	84.660	ENSFCAG00000021990	APEX2	100	84.660	Felis_catus
ENSSSCG00000012348	-	100	79.537	ENSFDAG00000008076	APEX2	100	79.537	Fukomys_damarensis
ENSSSCG00000012348	-	99	41.637	ENSFHEG00000021411	apex2	99	41.637	Fundulus_heteroclitus
ENSSSCG00000012348	-	51	65.000	ENSGMOG00000019681	apex2	89	56.716	Gadus_morhua
ENSSSCG00000012348	-	99	45.739	ENSGAFG00000005829	apex2	99	45.913	Gambusia_affinis
ENSSSCG00000012348	-	60	61.376	ENSGACG00000012307	apex2	85	60.104	Gasterosteus_aculeatus
ENSSSCG00000012348	-	91	48.000	ENSGAGG00000011520	APEX2	87	47.391	Gopherus_agassizii
ENSSSCG00000012348	-	100	83.591	ENSGGOG00000002056	APEX2	100	83.591	Gorilla_gorilla
ENSSSCG00000012348	-	99	47.135	ENSHBUG00000009938	apex2	99	47.135	Haplochromis_burtoni
ENSSSCG00000012348	-	100	79.151	ENSHGLG00000000273	APEX2	100	79.151	Heterocephalus_glaber_female
ENSSSCG00000012348	-	99	48.315	ENSHCOG00000010165	apex2	99	48.315	Hippocampus_comes
ENSSSCG00000012348	-	99	44.538	ENSIPUG00000000352	APEX2	99	44.874	Ictalurus_punctatus
ENSSSCG00000012348	-	100	80.888	ENSSTOG00000025121	APEX2	100	80.888	Ictidomys_tridecemlineatus
ENSSSCG00000012348	-	100	79.344	ENSJJAG00000019611	Apex2	100	79.344	Jaculus_jaculus
ENSSSCG00000012348	-	99	49.644	ENSKMAG00000006985	apex2	99	49.644	Kryptolebias_marmoratus
ENSSSCG00000012348	-	99	44.983	ENSLBEG00000012139	apex2	99	44.983	Labrus_bergylta
ENSSSCG00000012348	-	99	42.274	ENSLACG00000000865	APEX2	99	42.274	Latimeria_chalumnae
ENSSSCG00000012348	-	99	46.540	ENSLOCG00000014467	apex2	99	46.540	Lepisosteus_oculatus
ENSSSCG00000012348	-	100	82.946	ENSLAFG00000018312	APEX2	100	82.946	Loxodonta_africana
ENSSSCG00000012348	-	100	82.432	ENSMFAG00000002486	APEX2	100	82.432	Macaca_fascicularis
ENSSSCG00000012348	-	100	82.432	ENSMMUG00000008428	APEX2	100	82.432	Macaca_mulatta
ENSSSCG00000012348	-	100	82.819	ENSMNEG00000036783	APEX2	100	82.819	Macaca_nemestrina
ENSSSCG00000012348	-	100	82.625	ENSMLEG00000028208	APEX2	100	82.625	Mandrillus_leucophaeus
ENSSSCG00000012348	-	99	44.992	ENSMAMG00000024220	apex2	99	44.992	Mastacembelus_armatus
ENSSSCG00000012348	-	99	47.778	ENSMZEG00005026322	apex2	99	47.963	Maylandia_zebra
ENSSSCG00000012348	-	100	80.888	ENSMICG00000043181	APEX2	100	80.888	Microcebus_murinus
ENSSSCG00000012348	-	100	78.185	ENSMOCG00000004339	Apex2	100	78.185	Microtus_ochrogaster
ENSSSCG00000012348	-	99	44.822	ENSMMOG00000017340	apex2	99	44.615	Mola_mola
ENSSSCG00000012348	-	99	54.902	ENSMODG00000005341	APEX2	99	54.902	Monodelphis_domestica
ENSSSCG00000012348	-	99	44.257	ENSMALG00000014179	apex2	99	44.595	Monopterus_albus
ENSSSCG00000012348	-	100	78.530	MGP_CAROLIEiJ_G0033484	Apex2	100	80.000	Mus_caroli
ENSSSCG00000012348	-	100	78.185	ENSMUSG00000025269	Apex2	99	80.000	Mus_musculus
ENSSSCG00000012348	-	100	78.571	MGP_PahariEiJ_G0032023	Apex2	94	86.385	Mus_pahari
ENSSSCG00000012348	-	100	78.571	MGP_SPRETEiJ_G0034654	Apex2	100	80.000	Mus_spretus
ENSSSCG00000012348	-	100	84.660	ENSMPUG00000003293	APEX2	100	84.660	Mustela_putorius_furo
ENSSSCG00000012348	-	100	78.835	ENSMLUG00000004562	-	100	78.835	Myotis_lucifugus
ENSSSCG00000012348	-	100	80.971	ENSMLUG00000016298	-	100	80.971	Myotis_lucifugus
ENSSSCG00000012348	-	100	78.764	ENSNGAG00000013576	Apex2	100	78.764	Nannospalax_galili
ENSSSCG00000012348	-	99	44.231	ENSNBRG00000010099	apex2	99	45.105	Neolamprologus_brichardi
ENSSSCG00000012348	-	81	88.538	ENSNLEG00000032067	-	100	88.538	Nomascus_leucogenys
ENSSSCG00000012348	-	99	47.834	ENSONIG00000016881	apex2	99	48.776	Oreochromis_niloticus
ENSSSCG00000012348	-	91	52.203	ENSOANG00000000689	-	95	53.846	Ornithorhynchus_anatinus
ENSSSCG00000012348	-	100	69.942	ENSOCUG00000000570	APEX2	100	69.942	Oryctolagus_cuniculus
ENSSSCG00000012348	-	99	46.466	ENSORLG00000014053	apex2	99	46.466	Oryzias_latipes
ENSSSCG00000012348	-	99	46.524	ENSORLG00020013253	apex2	99	46.524	Oryzias_latipes_hni
ENSSSCG00000012348	-	99	46.290	ENSORLG00015007515	apex2	99	46.290	Oryzias_latipes_hsok
ENSSSCG00000012348	-	99	44.742	ENSOMEG00000003655	apex2	99	44.742	Oryzias_melastigma
ENSSSCG00000012348	-	99	82.879	ENSOGAG00000007797	APEX2	99	82.879	Otolemur_garnettii
ENSSSCG00000012348	-	100	87.573	ENSOARG00000005742	APEX2	100	87.573	Ovis_aries
ENSSSCG00000012348	-	100	83.398	ENSPPAG00000035747	APEX2	100	83.398	Pan_paniscus
ENSSSCG00000012348	-	100	84.272	ENSPPRG00000002440	APEX2	100	84.272	Panthera_pardus
ENSSSCG00000012348	-	100	84.078	ENSPTIG00000021651	APEX2	100	84.078	Panthera_tigris_altaica
ENSSSCG00000012348	-	100	83.591	ENSPTRG00000021946	APEX2	100	83.591	Pan_troglodytes
ENSSSCG00000012348	-	100	82.432	ENSPANG00000003595	APEX2	100	82.432	Papio_anubis
ENSSSCG00000012348	-	99	46.667	ENSPKIG00000007752	apex2	99	46.667	Paramormyrops_kingsleyae
ENSSSCG00000012348	-	99	45.259	ENSPMGG00000009151	apex2	99	45.259	Periophthalmus_magnuspinnatus
ENSSSCG00000012348	-	100	79.344	ENSPEMG00000016475	Apex2	100	79.344	Peromyscus_maniculatus_bairdii
ENSSSCG00000012348	-	99	54.492	ENSPCIG00000007633	APEX2	98	54.492	Phascolarctos_cinereus
ENSSSCG00000012348	-	99	46.329	ENSPFOG00000000408	apex2	99	46.678	Poecilia_formosa
ENSSSCG00000012348	-	99	46.503	ENSPLAG00000023814	apex2	99	46.503	Poecilia_latipinna
ENSSSCG00000012348	-	99	46.154	ENSPMEG00000023222	apex2	99	46.503	Poecilia_mexicana
ENSSSCG00000012348	-	100	83.398	ENSPPYG00000020388	APEX2	100	83.398	Pongo_abelii
ENSSSCG00000012348	-	100	83.977	ENSPCOG00000016083	APEX2	100	83.977	Propithecus_coquereli
ENSSSCG00000012348	-	91	84.598	ENSPVAG00000007851	APEX2	100	85.498	Pteropus_vampyrus
ENSSSCG00000012348	-	99	44.737	ENSPNYG00000015698	apex2	99	45.614	Pundamilia_nyererei
ENSSSCG00000012348	-	99	44.295	ENSPNAG00000011666	apex2	99	44.295	Pygocentrus_nattereri
ENSSSCG00000012348	-	100	78.227	ENSRNOG00000000166	Apex2	100	78.227	Rattus_norvegicus
ENSSSCG00000012348	-	100	82.819	ENSRBIG00000036500	APEX2	100	82.819	Rhinopithecus_bieti
ENSSSCG00000012348	-	100	83.012	ENSRROG00000032674	APEX2	100	83.012	Rhinopithecus_roxellana
ENSSSCG00000012348	-	96	67.800	ENSSBOG00000003489	-	99	67.800	Saimiri_boliviensis_boliviensis
ENSSSCG00000012348	-	100	83.977	ENSSBOG00000030500	-	100	83.977	Saimiri_boliviensis_boliviensis
ENSSSCG00000012348	-	99	54.314	ENSSHAG00000007846	APEX2	99	54.314	Sarcophilus_harrisii
ENSSSCG00000012348	-	99	48.991	ENSSFOG00015010354	apex2	99	49.358	Scleropages_formosus
ENSSSCG00000012348	-	99	45.184	ENSSMAG00000012753	apex2	99	45.550	Scophthalmus_maximus
ENSSSCG00000012348	-	99	46.181	ENSSDUG00000022892	apex2	99	46.181	Seriola_dumerili
ENSSSCG00000012348	-	99	46.886	ENSSLDG00000024347	apex2	99	47.070	Seriola_lalandi_dorsalis
ENSSSCG00000012348	-	100	77.220	ENSSARG00000010297	APEX2	100	77.220	Sorex_araneus
ENSSSCG00000012348	-	99	46.935	ENSSPAG00000016279	apex2	99	46.935	Stegastes_partitus
ENSSSCG00000012348	-	99	46.046	ENSTRUG00000015660	apex2	99	46.046	Takifugu_rubripes
ENSSSCG00000012348	-	87	47.494	ENSTNIG00000003725	apex2	100	47.494	Tetraodon_nigroviridis
ENSSSCG00000012348	-	91	80.137	ENSTBEG00000010520	APEX2	100	81.075	Tupaia_belangeri
ENSSSCG00000012348	-	100	86.990	ENSUAMG00000004720	APEX2	100	86.990	Ursus_americanus
ENSSSCG00000012348	-	100	82.524	ENSUMAG00000002892	APEX2	100	82.524	Ursus_maritimus
ENSSSCG00000012348	-	100	86.019	ENSVVUG00000005989	APEX2	100	86.019	Vulpes_vulpes
ENSSSCG00000012348	-	99	46.314	ENSXETG00000022026	apex2	98	46.314	Xenopus_tropicalis
ENSSSCG00000012348	-	99	46.585	ENSXMAG00000025740	apex2	99	46.760	Xiphophorus_maculatus