EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000012486 (Gene tree)
Gene ID: 100515986
Gene Symbol: CSTF2
Alias: CstF-64
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 34541 bases
Position: chrX:82508415-82542955
Accession: 100515986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000030738	RRM_1	PF00076.22	1.8e-25	1	1
ENSSSCP00000013281	RRM_1	PF00076.22	2.5e-25	1	1
ENSSSCP00000022308	RRM_1	PF00076.22	2.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000013653	CSTF2-202	7001	XM_003135231	ENSSSCP00000013281	572 (aa)	XP_003135279	F1S1L9
ENSSSCT00000034722	CSTF2-203	6683	XM_005673758	ENSSSCP00000030738	466 (aa)	XP_005673815	K7GS58
ENSSSCT00000027214	CSTF2-201	7061	XM_003360388	ENSSSCP00000022308	592 (aa)	XP_003360436	I3LE23

Gene Model

Click here to download ENSSSCG00000012486's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000012486's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000012486	CSTF2	99	70.400	ENSSSCG00000010430	CSTF2T	99	71.040

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000012486	CSTF2	100	96.970	ENSG00000101811	CSTF2	100	95.645	Homo_sapiens
ENSSSCG00000012486	CSTF2	99	61.400	ENSAPOG00000005630	cstf2	97	62.130	Acanthochromis_polyacanthus
ENSSSCG00000012486	CSTF2	100	97.306	ENSAMEG00000002082	CSTF2	100	95.861	Ailuropoda_melanoleuca
ENSSSCG00000012486	CSTF2	87	82.645	ENSACIG00000012852	cstf2	96	59.960	Amphilophus_citrinellus
ENSSSCG00000012486	CSTF2	99	60.202	ENSAOCG00000020905	cstf2	97	60.990	Amphiprion_ocellaris
ENSSSCG00000012486	CSTF2	99	60.000	ENSAPEG00000006526	cstf2	97	60.990	Amphiprion_percula
ENSSSCG00000012486	CSTF2	87	80.247	ENSATEG00000018186	cstf2	96	60.966	Anabas_testudineus
ENSSSCG00000012486	CSTF2	96	82.796	ENSAPLG00000007255	CSTF2	98	78.305	Anas_platyrhynchos
ENSSSCG00000012486	CSTF2	100	96.296	ENSANAG00000022342	CSTF2	100	94.640	Aotus_nancymaae
ENSSSCG00000012486	CSTF2	52	82.645	ENSACLG00000000779	cstf2	93	62.173	Astatotilapia_calliptera
ENSSSCG00000012486	CSTF2	81	93.548	ENSAMXG00000021477	cstf2	96	98.413	Astyanax_mexicanus
ENSSSCG00000012486	CSTF2	100	98.316	ENSBTAG00000003547	CSTF2	100	97.203	Bos_taurus
ENSSSCG00000012486	CSTF2	100	96.296	ENSCJAG00000004422	CSTF2	100	96.296	Callithrix_jacchus
ENSSSCG00000012486	CSTF2	100	96.014	ENSCAFG00000017551	CSTF2	100	96.014	Canis_familiaris
ENSSSCG00000012486	CSTF2	100	96.147	ENSCAFG00020007619	CSTF2	100	96.147	Canis_lupus_dingo
ENSSSCG00000012486	CSTF2	100	98.653	ENSCHIG00000016994	CSTF2	100	97.203	Capra_hircus
ENSSSCG00000012486	CSTF2	100	96.970	ENSTSYG00000006529	CSTF2	100	95.980	Carlito_syrichta
ENSSSCG00000012486	CSTF2	100	93.970	ENSCPOG00000015255	CSTF2	100	93.970	Cavia_porcellus
ENSSSCG00000012486	CSTF2	100	96.296	ENSCCAG00000032975	CSTF2	100	95.142	Cebus_capucinus
ENSSSCG00000012486	CSTF2	100	96.633	ENSCATG00000022835	CSTF2	100	95.477	Cercocebus_atys
ENSSSCG00000012486	CSTF2	100	94.276	ENSCLAG00000001904	CSTF2	100	93.970	Chinchilla_lanigera
ENSSSCG00000012486	CSTF2	100	96.970	ENSCSAG00000010360	CSTF2	100	95.645	Chlorocebus_sabaeus
ENSSSCG00000012486	CSTF2	71	100.000	ENSCHOG00000012803	CSTF2	75	100.000	Choloepus_hoffmanni
ENSSSCG00000012486	CSTF2	100	85.284	ENSCPBG00000014293	CSTF2	100	76.271	Chrysemys_picta_bellii
ENSSSCG00000012486	CSTF2	100	96.970	ENSCANG00000030612	CSTF2	100	95.645	Colobus_angolensis_palliatus
ENSSSCG00000012486	CSTF2	100	90.862	ENSCGRG00001023023	Cstf2	100	90.862	Cricetulus_griseus_chok1gshd
ENSSSCG00000012486	CSTF2	100	89.391	ENSCGRG00000003897	Cstf2	100	89.391	Cricetulus_griseus_crigri
ENSSSCG00000012486	CSTF2	87	81.557	ENSCVAG00000005731	cstf2	96	60.896	Cyprinodon_variegatus
ENSSSCG00000012486	CSTF2	75	98.182	ENSDARG00000090788	cstf2	93	92.188	Danio_rerio
ENSSSCG00000012486	CSTF2	100	91.463	ENSDORG00000007195	Cstf2	100	91.463	Dipodomys_ordii
ENSSSCG00000012486	CSTF2	79	94.595	ENSETEG00000004931	CSTF2	68	94.595	Echinops_telfairi
ENSSSCG00000012486	CSTF2	100	96.970	ENSEASG00005001216	CSTF2	100	96.817	Equus_asinus_asinus
ENSSSCG00000012486	CSTF2	100	96.970	ENSECAG00000009325	CSTF2	100	96.817	Equus_caballus
ENSSSCG00000012486	CSTF2	100	97.306	ENSFCAG00000007000	CSTF2	100	96.817	Felis_catus
ENSSSCG00000012486	CSTF2	90	80.620	ENSFALG00000003859	CSTF2	100	77.345	Ficedula_albicollis
ENSSSCG00000012486	CSTF2	100	94.276	ENSFDAG00000002416	CSTF2	100	93.934	Fukomys_damarensis
ENSSSCG00000012486	CSTF2	87	80.498	ENSFHEG00000017065	cstf2	93	60.312	Fundulus_heteroclitus
ENSSSCG00000012486	CSTF2	99	61.098	ENSGMOG00000005145	cstf2	99	59.252	Gadus_morhua
ENSSSCG00000012486	CSTF2	100	79.158	ENSGALG00000006760	CSTF2	100	79.579	Gallus_gallus
ENSSSCG00000012486	CSTF2	52	81.743	ENSGAFG00000020027	cstf2	96	59.930	Gambusia_affinis
ENSSSCG00000012486	CSTF2	99	56.110	ENSGACG00000017326	cstf2	94	81.633	Gasterosteus_aculeatus
ENSSSCG00000012486	CSTF2	100	84.158	ENSGAGG00000006037	CSTF2	100	79.266	Gopherus_agassizii
ENSSSCG00000012486	CSTF2	100	96.970	ENSGGOG00000022267	CSTF2	100	95.645	Gorilla_gorilla
ENSSSCG00000012486	CSTF2	65	82.041	ENSHBUG00000016183	cstf2	93	61.895	Haplochromis_burtoni
ENSSSCG00000012486	CSTF2	100	80.944	ENSHGLG00000013455	-	100	80.944	Heterocephalus_glaber_female
ENSSSCG00000012486	CSTF2	100	94.107	ENSHGLG00000000659	-	100	94.107	Heterocephalus_glaber_female
ENSSSCG00000012486	CSTF2	100	81.119	ENSHGLG00100015391	-	100	81.119	Heterocephalus_glaber_male
ENSSSCG00000012486	CSTF2	100	94.107	ENSHGLG00100001130	-	100	94.107	Heterocephalus_glaber_male
ENSSSCG00000012486	CSTF2	84	82.377	ENSHCOG00000005157	cstf2	97	63.469	Hippocampus_comes
ENSSSCG00000012486	CSTF2	100	60.236	ENSIPUG00000017839	cstf2	99	60.732	Ictalurus_punctatus
ENSSSCG00000012486	CSTF2	100	93.934	ENSSTOG00000023445	CSTF2	100	93.934	Ictidomys_tridecemlineatus
ENSSSCG00000012486	CSTF2	100	92.374	ENSJJAG00000020507	Cstf2	100	92.374	Jaculus_jaculus
ENSSSCG00000012486	CSTF2	84	79.592	ENSKMAG00000001068	cstf2	96	60.159	Kryptolebias_marmoratus
ENSSSCG00000012486	CSTF2	61	94.915	ENSLBEG00000028720	cstf2	85	94.915	Labrus_bergylta
ENSSSCG00000012486	CSTF2	99	77.000	ENSLACG00000015927	CSTF2	99	67.652	Latimeria_chalumnae
ENSSSCG00000012486	CSTF2	98	76.389	ENSLOCG00000015300	cstf2	93	65.862	Lepisosteus_oculatus
ENSSSCG00000012486	CSTF2	100	94.276	ENSLAFG00000000474	CSTF2	100	92.462	Loxodonta_africana
ENSSSCG00000012486	CSTF2	100	96.970	ENSMFAG00000043888	CSTF2	100	95.645	Macaca_fascicularis
ENSSSCG00000012486	CSTF2	100	96.970	ENSMMUG00000013008	CSTF2	100	96.121	Macaca_mulatta
ENSSSCG00000012486	CSTF2	100	96.970	ENSMNEG00000041824	CSTF2	100	95.645	Macaca_nemestrina
ENSSSCG00000012486	CSTF2	100	96.970	ENSMLEG00000036870	CSTF2	100	95.645	Mandrillus_leucophaeus
ENSSSCG00000012486	CSTF2	82	79.399	ENSMAMG00000020364	cstf2	96	61.317	Mastacembelus_armatus
ENSSSCG00000012486	CSTF2	52	82.645	ENSMZEG00005007200	cstf2	96	62.173	Maylandia_zebra
ENSSSCG00000012486	CSTF2	91	89.189	ENSMGAG00000004139	CSTF2	100	82.470	Meleagris_gallopavo
ENSSSCG00000012486	CSTF2	100	91.034	ENSMAUG00000000965	Cstf2	100	91.034	Mesocricetus_auratus
ENSSSCG00000012486	CSTF2	100	95.439	ENSMICG00000014121	CSTF2	100	95.439	Microcebus_murinus
ENSSSCG00000012486	CSTF2	100	90.087	ENSMOCG00000008081	Cstf2	100	90.087	Microtus_ochrogaster
ENSSSCG00000012486	CSTF2	84	92.308	ENSMMOG00000000538	cstf2	96	56.557	Mola_mola
ENSSSCG00000012486	CSTF2	100	83.838	ENSMODG00000011785	CSTF2	100	83.195	Monodelphis_domestica
ENSSSCG00000012486	CSTF2	100	92.256	MGP_CAROLIEiJ_G0033383	Cstf2	100	91.034	Mus_caroli
ENSSSCG00000012486	CSTF2	100	91.034	ENSMUSG00000031256	Cstf2	100	91.034	Mus_musculus
ENSSSCG00000012486	CSTF2	100	92.256	MGP_PahariEiJ_G0031923	Cstf2	100	91.192	Mus_pahari
ENSSSCG00000012486	CSTF2	100	92.256	MGP_SPRETEiJ_G0034548	Cstf2	100	91.034	Mus_spretus
ENSSSCG00000012486	CSTF2	100	96.633	ENSMPUG00000002339	CSTF2	100	91.111	Mustela_putorius_furo
ENSSSCG00000012486	CSTF2	100	92.655	ENSMLUG00000004598	CSTF2	98	89.030	Myotis_lucifugus
ENSSSCG00000012486	CSTF2	100	92.401	ENSNGAG00000021985	Cstf2	100	92.573	Nannospalax_galili
ENSSSCG00000012486	CSTF2	93	63.457	ENSNBRG00000021694	cstf2	100	56.530	Neolamprologus_brichardi
ENSSSCG00000012486	CSTF2	100	97.306	ENSNLEG00000007510	CSTF2	100	95.645	Nomascus_leucogenys
ENSSSCG00000012486	CSTF2	100	83.784	ENSMEUG00000011186	-	100	84.441	Notamacropus_eugenii
ENSSSCG00000012486	CSTF2	100	82.095	ENSMEUG00000007875	-	100	80.070	Notamacropus_eugenii
ENSSSCG00000012486	CSTF2	91	80.230	ENSMEUG00000014025	-	100	81.766	Notamacropus_eugenii
ENSSSCG00000012486	CSTF2	87	80.090	ENSOPRG00000003106	CSTF2	87	80.090	Ochotona_princeps
ENSSSCG00000012486	CSTF2	100	93.068	ENSODEG00000002059	CSTF2	100	93.068	Octodon_degus
ENSSSCG00000012486	CSTF2	82	80.000	ENSONIG00000002631	cstf2	99	57.609	Oreochromis_niloticus
ENSSSCG00000012486	CSTF2	94	98.182	ENSOANG00000004208	CSTF2	87	84.810	Ornithorhynchus_anatinus
ENSSSCG00000012486	CSTF2	100	92.548	ENSOCUG00000010468	CSTF2	100	92.548	Oryctolagus_cuniculus
ENSSSCG00000012486	CSTF2	86	80.498	ENSORLG00000001380	cstf2	97	60.040	Oryzias_latipes
ENSSSCG00000012486	CSTF2	83	80.913	ENSORLG00020021917	cstf2	97	60.239	Oryzias_latipes_hni
ENSSSCG00000012486	CSTF2	86	80.498	ENSORLG00015011996	cstf2	96	60.442	Oryzias_latipes_hsok
ENSSSCG00000012486	CSTF2	99	57.673	ENSOMEG00000015507	cstf2	97	60.437	Oryzias_melastigma
ENSSSCG00000012486	CSTF2	100	94.949	ENSOGAG00000011192	CSTF2	100	89.030	Otolemur_garnettii
ENSSSCG00000012486	CSTF2	100	98.653	ENSOARG00000001022	CSTF2	100	97.203	Ovis_aries
ENSSSCG00000012486	CSTF2	100	96.970	ENSPPAG00000031804	CSTF2	100	95.645	Pan_paniscus
ENSSSCG00000012486	CSTF2	100	97.306	ENSPPRG00000022492	CSTF2	100	96.985	Panthera_pardus
ENSSSCG00000012486	CSTF2	100	96.650	ENSPTIG00000009922	CSTF2	100	96.650	Panthera_tigris_altaica
ENSSSCG00000012486	CSTF2	100	96.970	ENSPTRG00000022090	CSTF2	100	95.645	Pan_troglodytes
ENSSSCG00000012486	CSTF2	100	96.970	ENSPANG00000002303	CSTF2	100	95.645	Papio_anubis
ENSSSCG00000012486	CSTF2	99	62.226	ENSPKIG00000005033	cstf2	97	61.121	Paramormyrops_kingsleyae
ENSSSCG00000012486	CSTF2	84	81.743	ENSPMGG00000006534	cstf2	97	59.844	Periophthalmus_magnuspinnatus
ENSSSCG00000012486	CSTF2	100	90.345	ENSPEMG00000019415	Cstf2	100	90.345	Peromyscus_maniculatus_bairdii
ENSSSCG00000012486	CSTF2	100	84.512	ENSPCIG00000002989	CSTF2	100	83.278	Phascolarctos_cinereus
ENSSSCG00000012486	CSTF2	84	82.158	ENSPLAG00000011176	cstf2	96	59.369	Poecilia_latipinna
ENSSSCG00000012486	CSTF2	84	82.158	ENSPMEG00000017743	cstf2	96	59.172	Poecilia_mexicana
ENSSSCG00000012486	CSTF2	83	81.481	ENSPREG00000011481	cstf2	97	60.727	Poecilia_reticulata
ENSSSCG00000012486	CSTF2	100	97.306	ENSPPYG00000020541	CSTF2	100	95.812	Pongo_abelii
ENSSSCG00000012486	CSTF2	100	96.115	ENSPCOG00000027744	CSTF2	100	96.115	Propithecus_coquereli
ENSSSCG00000012486	CSTF2	92	93.220	ENSPVAG00000008342	CSTF2	100	81.329	Pteropus_vampyrus
ENSSSCG00000012486	CSTF2	82	82.041	ENSPNYG00000010852	cstf2	94	91.781	Pundamilia_nyererei
ENSSSCG00000012486	CSTF2	99	61.513	ENSPNAG00000018887	cstf2	97	61.849	Pygocentrus_nattereri
ENSSSCG00000012486	CSTF2	100	91.652	ENSRNOG00000048025	Cstf2	100	91.652	Rattus_norvegicus
ENSSSCG00000012486	CSTF2	100	93.934	ENSRBIG00000030745	CSTF2	100	93.934	Rhinopithecus_bieti
ENSSSCG00000012486	CSTF2	100	96.970	ENSRROG00000045042	CSTF2	100	95.645	Rhinopithecus_roxellana
ENSSSCG00000012486	CSTF2	100	96.633	ENSSBOG00000021649	CSTF2	100	95.142	Saimiri_boliviensis_boliviensis
ENSSSCG00000012486	CSTF2	94	100.000	ENSSHAG00000003681	CSTF2	87	89.744	Sarcophilus_harrisii
ENSSSCG00000012486	CSTF2	99	63.394	ENSSFOG00015006348	cstf2	98	63.394	Scleropages_formosus
ENSSSCG00000012486	CSTF2	98	59.432	ENSSMAG00000013463	cstf2	95	61.034	Scophthalmus_maximus
ENSSSCG00000012486	CSTF2	100	76.645	ENSSPUG00000005288	-	94	84.459	Sphenodon_punctatus
ENSSSCG00000012486	CSTF2	100	78.912	ENSTGUG00000002253	CSTF2	100	79.252	Taeniopygia_guttata
ENSSSCG00000012486	CSTF2	99	60.757	ENSTNIG00000016860	cstf2	99	61.274	Tetraodon_nigroviridis
ENSSSCG00000012486	CSTF2	55	100.000	ENSTBEG00000010029	-	69	100.000	Tupaia_belangeri
ENSSSCG00000012486	CSTF2	100	98.267	ENSTTRG00000013556	CSTF2	100	98.267	Tursiops_truncatus
ENSSSCG00000012486	CSTF2	100	97.306	ENSUAMG00000026605	CSTF2	100	96.346	Ursus_americanus
ENSSSCG00000012486	CSTF2	96	96.970	ENSUMAG00000012417	CSTF2	100	98.582	Ursus_maritimus
ENSSSCG00000012486	CSTF2	85	94.081	ENSVPAG00000006466	CSTF2	72	99.125	Vicugna_pacos
ENSSSCG00000012486	CSTF2	100	96.187	ENSVVUG00000004717	CSTF2	100	96.187	Vulpes_vulpes
ENSSSCG00000012486	CSTF2	84	87.143	ENSXETG00000009642	cstf2	87	87.143	Xenopus_tropicalis
ENSSSCG00000012486	CSTF2	79	85.238	ENSXCOG00000016436	cstf2	91	96.970	Xiphophorus_couchianus
ENSSSCG00000012486	CSTF2	83	81.481	ENSXMAG00000013524	cstf2	97	56.564	Xiphophorus_maculatus