EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000012649 (Gene tree)
Gene ID: 100188905
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 75930 bases
Position: chrX:106039935-106115864
Accession: 100188905
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000013448	ResIII	PF04851.15	7.2e-12	1	1
ENSSSCP00000029556	ResIII	PF04851.15	7.3e-12	1	1
ENSSSCP00000028784	ResIII	PF04851.15	8.8e-12	1	1
ENSSSCP00000028784	DEAD	PF00270.29	1.6e-06	1	1
ENSSSCP00000013448	DEAD	PF00270.29	1.7e-06	1	1
ENSSSCP00000029556	DEAD	PF00270.29	1.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000032734	SMARCA1-202	4050	XM_005673893	ENSSSCP00000029556	1039 (aa)	XP_005673950	K7GNV1
ENSSSCT00000013830	SMARCA1-201	3850	XM_003135362	ENSSSCP00000013448	1032 (aa)	XP_003135410	F1RTI9
ENSSSCT00000033549	SMARCA1-203	4980	XM_003360443	ENSSSCP00000028784	1005 (aa)	XP_003360491	K7GLQ2

Gene Model

Click here to download ENSSSCG00000012649's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000012649's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000012649	SMARCA1	94	85.524	ENSSSCG00000009047	SMARCA5	92	87.093
ENSSSCG00000012649	SMARCA1	55	44.056	ENSSSCG00000006701	CHD1L	73	44.056
ENSSSCG00000012649	SMARCA1	54	48.207	ENSSSCG00000010486	HELLS	64	48.207
ENSSSCG00000012649	SMARCA1	52	31.833	ENSSSCG00000006101	-	73	31.833

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000012649	SMARCA1	99	97.784	ENSG00000102038	SMARCA1	98	97.784	Homo_sapiens
ENSSSCG00000012649	SMARCA1	95	83.214	ENSAPOG00000016035	smarca5	98	84.026	Acanthochromis_polyacanthus
ENSSSCG00000012649	SMARCA1	99	96.857	ENSAMEG00000015218	SMARCA1	98	96.857	Ailuropoda_melanoleuca
ENSSSCG00000012649	SMARCA1	87	84.053	ENSACIG00000016982	smarca5	99	84.152	Amphilophus_citrinellus
ENSSSCG00000012649	SMARCA1	95	83.214	ENSAOCG00000015578	smarca5	93	83.644	Amphiprion_ocellaris
ENSSSCG00000012649	SMARCA1	95	83.214	ENSAPEG00000011117	smarca5	99	84.080	Amphiprion_percula
ENSSSCG00000012649	SMARCA1	95	83.112	ENSATEG00000012894	smarca5	93	84.672	Anabas_testudineus
ENSSSCG00000012649	SMARCA1	94	92.806	ENSAPLG00000013149	SMARCA1	99	92.887	Anas_platyrhynchos
ENSSSCG00000012649	SMARCA1	95	90.827	ENSACAG00000011376	SMARCA1	93	91.795	Anolis_carolinensis
ENSSSCG00000012649	SMARCA1	98	92.141	ENSANAG00000023098	SMARCA1	98	89.981	Aotus_nancymaae
ENSSSCG00000012649	SMARCA1	96	82.329	ENSACLG00000025356	smarca5	93	84.058	Astatotilapia_calliptera
ENSSSCG00000012649	SMARCA1	97	81.864	ENSAMXG00000005709	smarca5	92	84.753	Astyanax_mexicanus
ENSSSCG00000012649	SMARCA1	90	88.172	ENSAMXG00000011227	smarca1	99	89.818	Astyanax_mexicanus
ENSSSCG00000012649	SMARCA1	99	98.362	ENSBTAG00000002292	SMARCA1	100	97.146	Bos_taurus
ENSSSCG00000012649	SMARCA1	94	63.303	WBGene00002169	isw-1	96	63.432	Caenorhabditis_elegans
ENSSSCG00000012649	SMARCA1	99	97.592	ENSCJAG00000002868	SMARCA1	98	97.592	Callithrix_jacchus
ENSSSCG00000012649	SMARCA1	99	87.678	ENSCAFG00000018673	SMARCA1	99	88.706	Canis_familiaris
ENSSSCG00000012649	SMARCA1	99	98.555	ENSCAFG00020001751	SMARCA1	98	98.555	Canis_lupus_dingo
ENSSSCG00000012649	SMARCA1	99	98.397	ENSCHIG00000009837	SMARCA1	98	98.362	Capra_hircus
ENSSSCG00000012649	SMARCA1	94	98.150	ENSTSYG00000004240	SMARCA1	98	97.253	Carlito_syrichta
ENSSSCG00000012649	SMARCA1	96	96.024	ENSCPOG00000013601	SMARCA1	95	96.158	Cavia_porcellus
ENSSSCG00000012649	SMARCA1	99	94.509	ENSCCAG00000030817	SMARCA1	98	94.509	Cebus_capucinus
ENSSSCG00000012649	SMARCA1	100	97.690	ENSCATG00000015921	SMARCA1	99	97.690	Cercocebus_atys
ENSSSCG00000012649	SMARCA1	99	96.339	ENSCLAG00000002171	SMARCA1	98	96.339	Chinchilla_lanigera
ENSSSCG00000012649	SMARCA1	99	97.784	ENSCSAG00000008460	SMARCA1	98	97.784	Chlorocebus_sabaeus
ENSSSCG00000012649	SMARCA1	94	93.217	ENSCPBG00000001146	SMARCA1	92	93.299	Chrysemys_picta_bellii
ENSSSCG00000012649	SMARCA1	96	71.884	ENSCING00000004110	swi/snf	96	73.608	Ciona_intestinalis
ENSSSCG00000012649	SMARCA1	96	71.715	ENSCSAVG00000004620	-	100	73.942	Ciona_savignyi
ENSSSCG00000012649	SMARCA1	99	97.688	ENSCANG00000007183	SMARCA1	98	97.688	Colobus_angolensis_palliatus
ENSSSCG00000012649	SMARCA1	99	94.509	ENSCGRG00001010776	Smarca1	98	93.307	Cricetulus_griseus_chok1gshd
ENSSSCG00000012649	SMARCA1	95	94.944	ENSCGRG00000015301	Smarca1	98	95.418	Cricetulus_griseus_crigri
ENSSSCG00000012649	SMARCA1	98	80.156	ENSCSEG00000000328	smarca5	94	83.608	Cynoglossus_semilaevis
ENSSSCG00000012649	SMARCA1	97	81.537	ENSCVAG00000008668	smarca5	99	83.628	Cyprinodon_variegatus
ENSSSCG00000012649	SMARCA1	97	81.014	ENSDARG00000052348	smarca5	93	83.523	Danio_rerio
ENSSSCG00000012649	SMARCA1	93	91.475	ENSDARG00000012776	smarca1	92	91.475	Danio_rerio
ENSSSCG00000012649	SMARCA1	100	95.958	ENSDNOG00000004315	SMARCA1	100	95.958	Dasypus_novemcinctus
ENSSSCG00000012649	SMARCA1	100	95.476	ENSDORG00000009270	Smarca1	98	95.093	Dipodomys_ordii
ENSSSCG00000012649	SMARCA1	94	72.783	FBgn0011604	Iswi	96	72.965	Drosophila_melanogaster
ENSSSCG00000012649	SMARCA1	79	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSSSCG00000012649	SMARCA1	94	80.513	ENSEBUG00000001239	smarca5	94	81.847	Eptatretus_burgeri
ENSSSCG00000012649	SMARCA1	96	94.589	ENSEASG00005008218	SMARCA1	99	94.589	Equus_asinus_asinus
ENSSSCG00000012649	SMARCA1	99	98.748	ENSECAG00000012106	SMARCA1	98	98.748	Equus_caballus
ENSSSCG00000012649	SMARCA1	77	98.013	ENSEEUG00000014927	SMARCA1	83	98.013	Erinaceus_europaeus
ENSSSCG00000012649	SMARCA1	94	86.988	ENSELUG00000010515	smarca1	96	87.041	Esox_lucius
ENSSSCG00000012649	SMARCA1	99	98.555	ENSFCAG00000018496	SMARCA1	98	98.555	Felis_catus
ENSSSCG00000012649	SMARCA1	88	92.881	ENSFALG00000000209	SMARCA1	98	92.967	Ficedula_albicollis
ENSSSCG00000012649	SMARCA1	94	96.573	ENSFDAG00000009818	SMARCA1	97	96.573	Fukomys_damarensis
ENSSSCG00000012649	SMARCA1	99	80.272	ENSFHEG00000007687	smarca5	91	85.497	Fundulus_heteroclitus
ENSSSCG00000012649	SMARCA1	95	91.230	ENSGALG00000008431	SMARCA1	97	92.426	Gallus_gallus
ENSSSCG00000012649	SMARCA1	97	81.936	ENSGAFG00000017731	smarca5	93	83.747	Gambusia_affinis
ENSSSCG00000012649	SMARCA1	94	93.306	ENSGAGG00000023575	SMARCA1	99	93.299	Gopherus_agassizii
ENSSSCG00000012649	SMARCA1	71	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSSSCG00000012649	SMARCA1	99	96.339	ENSHGLG00000003080	SMARCA1	98	96.339	Heterocephalus_glaber_female
ENSSSCG00000012649	SMARCA1	94	96.910	ENSHGLG00100001102	SMARCA1	98	96.319	Heterocephalus_glaber_male
ENSSSCG00000012649	SMARCA1	95	83.112	ENSHCOG00000005458	smarca5	94	83.179	Hippocampus_comes
ENSSSCG00000012649	SMARCA1	98	80.278	ENSIPUG00000005229	SMARCA5	96	82.869	Ictalurus_punctatus
ENSSSCG00000012649	SMARCA1	96	85.772	ENSIPUG00000016905	Smarca1	98	87.708	Ictalurus_punctatus
ENSSSCG00000012649	SMARCA1	100	97.578	ENSSTOG00000014524	SMARCA1	100	97.578	Ictidomys_tridecemlineatus
ENSSSCG00000012649	SMARCA1	100	95.091	ENSJJAG00000002593	Smarca1	99	94.899	Jaculus_jaculus
ENSSSCG00000012649	SMARCA1	95	83.419	ENSKMAG00000003777	smarca5	93	84.058	Kryptolebias_marmoratus
ENSSSCG00000012649	SMARCA1	96	81.919	ENSLBEG00000018112	smarca5	94	83.196	Labrus_bergylta
ENSSSCG00000012649	SMARCA1	90	83.673	ENSLBEG00000013295	SMARCA1	100	84.829	Labrus_bergylta
ENSSSCG00000012649	SMARCA1	95	91.205	ENSLACG00000016697	SMARCA1	96	90.462	Latimeria_chalumnae
ENSSSCG00000012649	SMARCA1	96	88.372	ENSLOCG00000014591	smarca1	95	89.712	Lepisosteus_oculatus
ENSSSCG00000012649	SMARCA1	96	95.582	ENSLAFG00000000896	SMARCA1	99	96.041	Loxodonta_africana
ENSSSCG00000012649	SMARCA1	100	97.690	ENSMFAG00000002117	SMARCA1	99	97.690	Macaca_fascicularis
ENSSSCG00000012649	SMARCA1	100	97.690	ENSMMUG00000008818	SMARCA1	99	98.013	Macaca_mulatta
ENSSSCG00000012649	SMARCA1	100	97.690	ENSMNEG00000041768	SMARCA1	99	97.690	Macaca_nemestrina
ENSSSCG00000012649	SMARCA1	99	97.688	ENSMLEG00000043198	SMARCA1	98	97.688	Mandrillus_leucophaeus
ENSSSCG00000012649	SMARCA1	95	83.521	ENSMAMG00000014294	smarca5	93	83.918	Mastacembelus_armatus
ENSSSCG00000012649	SMARCA1	96	82.329	ENSMZEG00005009369	smarca5	93	84.058	Maylandia_zebra
ENSSSCG00000012649	SMARCA1	94	91.574	ENSMGAG00000007042	SMARCA1	97	91.650	Meleagris_gallopavo
ENSSSCG00000012649	SMARCA1	100	95.019	ENSMAUG00000008133	Smarca1	99	94.732	Mesocricetus_auratus
ENSSSCG00000012649	SMARCA1	99	97.303	ENSMICG00000015768	SMARCA1	98	97.303	Microcebus_murinus
ENSSSCG00000012649	SMARCA1	100	94.672	ENSMOCG00000009464	Smarca1	99	93.815	Microtus_ochrogaster
ENSSSCG00000012649	SMARCA1	97	80.040	ENSMMOG00000005547	smarca5	97	81.988	Mola_mola
ENSSSCG00000012649	SMARCA1	98	89.370	ENSMODG00000013187	-	97	89.240	Monodelphis_domestica
ENSSSCG00000012649	SMARCA1	95	82.907	ENSMALG00000002081	smarca5	97	82.462	Monopterus_albus
ENSSSCG00000012649	SMARCA1	100	94.828	MGP_CAROLIEiJ_G0033034	Smarca1	99	94.828	Mus_caroli
ENSSSCG00000012649	SMARCA1	100	94.828	ENSMUSG00000031099	Smarca1	99	94.828	Mus_musculus
ENSSSCG00000012649	SMARCA1	100	94.828	MGP_PahariEiJ_G0031579	Smarca1	99	94.828	Mus_pahari
ENSSSCG00000012649	SMARCA1	100	94.923	MGP_SPRETEiJ_G0034192	Smarca1	99	94.923	Mus_spretus
ENSSSCG00000012649	SMARCA1	99	97.238	ENSMPUG00000017423	SMARCA1	95	94.781	Mustela_putorius_furo
ENSSSCG00000012649	SMARCA1	98	94.095	ENSMLUG00000029614	SMARCA1	98	91.817	Myotis_lucifugus
ENSSSCG00000012649	SMARCA1	100	95.977	ENSNGAG00000006492	Smarca1	99	95.977	Nannospalax_galili
ENSSSCG00000012649	SMARCA1	96	82.430	ENSNBRG00000004463	smarca5	97	84.161	Neolamprologus_brichardi
ENSSSCG00000012649	SMARCA1	99	96.000	ENSNLEG00000015179	SMARCA1	98	97.248	Nomascus_leucogenys
ENSSSCG00000012649	SMARCA1	90	81.933	ENSMEUG00000008819	SMARCA1	99	81.914	Notamacropus_eugenii
ENSSSCG00000012649	SMARCA1	98	94.956	ENSODEG00000012163	SMARCA1	98	94.277	Octodon_degus
ENSSSCG00000012649	SMARCA1	96	82.430	ENSONIG00000009993	smarca5	93	84.161	Oreochromis_niloticus
ENSSSCG00000012649	SMARCA1	94	93.409	ENSOANG00000002862	SMARCA1	99	93.402	Ornithorhynchus_anatinus
ENSSSCG00000012649	SMARCA1	99	96.243	ENSOCUG00000001047	SMARCA1	98	96.243	Oryctolagus_cuniculus
ENSSSCG00000012649	SMARCA1	95	83.214	ENSORLG00000021998	smarca5	94	83.179	Oryzias_latipes
ENSSSCG00000012649	SMARCA1	95	83.316	ENSORLG00020017679	smarca5	93	83.851	Oryzias_latipes_hni
ENSSSCG00000012649	SMARCA1	95	83.214	ENSORLG00015017210	smarca5	94	83.077	Oryzias_latipes_hsok
ENSSSCG00000012649	SMARCA1	95	83.214	ENSOMEG00000000086	smarca5	94	83.077	Oryzias_melastigma
ENSSSCG00000012649	SMARCA1	100	96.194	ENSOGAG00000004399	SMARCA1	99	96.194	Otolemur_garnettii
ENSSSCG00000012649	SMARCA1	94	99.075	ENSOARG00000014638	SMARCA1	99	99.075	Ovis_aries
ENSSSCG00000012649	SMARCA1	99	97.784	ENSPPAG00000034647	SMARCA1	98	97.784	Pan_paniscus
ENSSSCG00000012649	SMARCA1	99	98.748	ENSPPRG00000008929	SMARCA1	98	98.748	Panthera_pardus
ENSSSCG00000012649	SMARCA1	97	94.912	ENSPTIG00000000915	SMARCA1	96	97.082	Panthera_tigris_altaica
ENSSSCG00000012649	SMARCA1	100	97.690	ENSPTRG00000049876	SMARCA1	99	97.690	Pan_troglodytes
ENSSSCG00000012649	SMARCA1	99	97.784	ENSPANG00000003871	SMARCA1	98	97.784	Papio_anubis
ENSSSCG00000012649	SMARCA1	94	85.082	ENSPKIG00000013411	smarca1	98	86.246	Paramormyrops_kingsleyae
ENSSSCG00000012649	SMARCA1	94	92.997	ENSPSIG00000010101	SMARCA1	99	92.990	Pelodiscus_sinensis
ENSSSCG00000012649	SMARCA1	100	96.073	ENSPEMG00000017503	Smarca1	99	96.073	Peromyscus_maniculatus_bairdii
ENSSSCG00000012649	SMARCA1	98	90.049	ENSPCIG00000015460	SMARCA1	97	92.221	Phascolarctos_cinereus
ENSSSCG00000012649	SMARCA1	95	83.316	ENSPFOG00000007649	smarca5	93	83.747	Poecilia_formosa
ENSSSCG00000012649	SMARCA1	95	83.316	ENSPLAG00000003363	smarca5	93	83.747	Poecilia_latipinna
ENSSSCG00000012649	SMARCA1	95	83.214	ENSPMEG00000019849	smarca5	93	83.644	Poecilia_mexicana
ENSSSCG00000012649	SMARCA1	95	83.214	ENSPREG00000023250	smarca5	93	83.644	Poecilia_reticulata
ENSSSCG00000012649	SMARCA1	98	94.597	ENSPPYG00000020703	SMARCA1	98	92.389	Pongo_abelii
ENSSSCG00000012649	SMARCA1	77	90.909	ENSPCOG00000020722	SMARCA1	94	93.215	Propithecus_coquereli
ENSSSCG00000012649	SMARCA1	94	96.144	ENSPVAG00000003805	SMARCA1	94	96.144	Pteropus_vampyrus
ENSSSCG00000012649	SMARCA1	56	84.110	ENSPNYG00000012299	smarca5	91	82.574	Pundamilia_nyererei
ENSSSCG00000012649	SMARCA1	99	96.050	ENSRNOG00000003762	Smarca1	98	96.050	Rattus_norvegicus
ENSSSCG00000012649	SMARCA1	99	97.688	ENSRROG00000034167	SMARCA1	98	97.688	Rhinopithecus_roxellana
ENSSSCG00000012649	SMARCA1	94	98.561	ENSSBOG00000020641	SMARCA1	99	98.561	Saimiri_boliviensis_boliviensis
ENSSSCG00000012649	SMARCA1	94	86.317	ENSSHAG00000013518	SMARCA1	99	86.303	Sarcophilus_harrisii
ENSSSCG00000012649	SMARCA1	99	80.471	ENSSFOG00015016794	smarca5	98	84.477	Scleropages_formosus
ENSSSCG00000012649	SMARCA1	94	88.217	ENSSFOG00015009043	smarca1	95	88.604	Scleropages_formosus
ENSSSCG00000012649	SMARCA1	97	80.881	ENSSMAG00000004801	smarca5	94	82.680	Scophthalmus_maximus
ENSSSCG00000012649	SMARCA1	97	80.853	ENSSDUG00000020690	smarca5	94	83.333	Seriola_dumerili
ENSSSCG00000012649	SMARCA1	97	80.853	ENSSLDG00000025190	smarca5	94	83.333	Seriola_lalandi_dorsalis
ENSSSCG00000012649	SMARCA1	79	97.518	ENSSARG00000000842	SMARCA1	83	97.518	Sorex_araneus
ENSSSCG00000012649	SMARCA1	97	89.911	ENSSPUG00000000590	SMARCA1	95	91.914	Sphenodon_punctatus
ENSSSCG00000012649	SMARCA1	96	82.028	ENSSPAG00000002894	smarca5	97	84.026	Stegastes_partitus
ENSSSCG00000012649	SMARCA1	94	92.292	ENSTGUG00000003899	-	99	92.371	Taeniopygia_guttata
ENSSSCG00000012649	SMARCA1	97	81.393	ENSTRUG00000014094	smarca5	94	83.060	Takifugu_rubripes
ENSSSCG00000012649	SMARCA1	95	82.190	ENSTNIG00000017717	smarca5	93	82.577	Tetraodon_nigroviridis
ENSSSCG00000012649	SMARCA1	94	90.000	ENSTBEG00000014973	SMARCA1	99	90.000	Tupaia_belangeri
ENSSSCG00000012649	SMARCA1	93	94.614	ENSTTRG00000006168	SMARCA1	99	94.614	Tursiops_truncatus
ENSSSCG00000012649	SMARCA1	99	98.170	ENSUAMG00000020201	SMARCA1	98	98.170	Ursus_americanus
ENSSSCG00000012649	SMARCA1	97	91.412	ENSUMAG00000004073	SMARCA1	97	99.270	Ursus_maritimus
ENSSSCG00000012649	SMARCA1	78	99.683	ENSVPAG00000010492	-	81	99.683	Vicugna_pacos
ENSSSCG00000012649	SMARCA1	97	97.003	ENSVVUG00000008878	SMARCA1	100	99.269	Vulpes_vulpes
ENSSSCG00000012649	SMARCA1	94	89.825	ENSXETG00000001526	smarca1	98	90.432	Xenopus_tropicalis
ENSSSCG00000012649	SMARCA1	97	81.836	ENSXCOG00000011170	smarca5	96	83.644	Xiphophorus_couchianus
ENSSSCG00000012649	SMARCA1	97	81.836	ENSXMAG00000009678	smarca5	98	84.481	Xiphophorus_maculatus