EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000012823 (Gene tree)
Gene ID: 100216430
Gene Symbol: DKC1
Alias: -
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 12376 bases
Position: chrX:125218801-125231176
Accession: 100216430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000054612	TruB_N	PF01509.18	3.2e-21	1	1
ENSSSCP00000041820	TruB_N	PF01509.18	3.9e-21	1	1
ENSSSCP00000013633	TruB_N	PF01509.18	3.9e-21	1	1
ENSSSCP00000029318	TruB_N	PF01509.18	4.3e-21	1	1
ENSSSCP00000013633	PUA	PF01472.20	1.6e-17	1	1
ENSSSCP00000041820	PUA	PF01472.20	1.8e-17	1	1
ENSSSCP00000054612	PUA	PF01472.20	1.8e-17	1	1
ENSSSCP00000029318	PUA	PF01472.20	2e-17	1	1
ENSSSCP00000054612	DKCLD	PF08068.12	1.9e-31	1	1
ENSSSCP00000041820	DKCLD	PF08068.12	2e-31	1	1
ENSSSCP00000029318	DKCLD	PF08068.12	2.3e-31	1	1
ENSSSCP00000013633	DKCLD	PF08068.12	2.3e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000041484	-	4455	-	ENSSSCP00000054612	479 (aa)	-	A0A287BDL1
ENSSSCT00000014017	-	4030	-	ENSSSCP00000013633	521 (aa)	-	F1RZ24
ENSSSCT00000043641	-	4705	-	ENSSSCP00000041820	504 (aa)	-	A0A287ADD4
ENSSSCT00000033158	-	4224	-	ENSSSCP00000029318	528 (aa)	-	K7GN67

Gene Model

Click here to download ENSSSCG00000012823's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000012823's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000012823	DKC1	100	90.857	ENSG00000130826	DKC1	100	97.150	Homo_sapiens
ENSSSCG00000012823	DKC1	83	86.364	ENSAPOG00000007799	dkc1	78	86.364	Acanthochromis_polyacanthus
ENSSSCG00000012823	DKC1	100	91.171	ENSAMEG00000002776	DKC1	100	90.595	Ailuropoda_melanoleuca
ENSSSCG00000012823	DKC1	86	84.578	ENSACIG00000022614	dkc1	83	87.374	Amphilophus_citrinellus
ENSSSCG00000012823	DKC1	83	86.111	ENSAOCG00000013159	dkc1	81	85.213	Amphiprion_ocellaris
ENSSSCG00000012823	DKC1	83	86.111	ENSAPEG00000002284	dkc1	81	85.606	Amphiprion_percula
ENSSSCG00000012823	DKC1	83	84.938	ENSATEG00000013682	dkc1	80	84.390	Anabas_testudineus
ENSSSCG00000012823	DKC1	91	83.864	ENSACAG00000015600	DKC1	69	89.000	Anolis_carolinensis
ENSSSCG00000012823	DKC1	93	94.820	ENSANAG00000022732	DKC1	100	88.571	Aotus_nancymaae
ENSSSCG00000012823	DKC1	83	85.930	ENSACLG00000015605	dkc1	81	85.930	Astatotilapia_calliptera
ENSSSCG00000012823	DKC1	91	81.106	ENSAMXG00000017108	dkc1	79	86.216	Astyanax_mexicanus
ENSSSCG00000012823	DKC1	97	90.891	ENSBTAG00000013045	DKC1	97	89.703	Bos_taurus
ENSSSCG00000012823	DKC1	86	66.505	WBGene00010478	K01G5.5	90	67.168	Caenorhabditis_elegans
ENSSSCG00000012823	DKC1	100	89.544	ENSCJAG00000004210	DKC1	100	88.973	Callithrix_jacchus
ENSSSCG00000012823	DKC1	100	91.747	ENSCAFG00000019620	-	100	91.747	Canis_familiaris
ENSSSCG00000012823	DKC1	95	82.159	ENSCAFG00000009311	-	96	78.443	Canis_familiaris
ENSSSCG00000012823	DKC1	100	91.747	ENSCAFG00020008918	-	100	91.747	Canis_lupus_dingo
ENSSSCG00000012823	DKC1	93	82.883	ENSCAFG00020009379	-	92	77.645	Canis_lupus_dingo
ENSSSCG00000012823	DKC1	100	89.443	ENSCHIG00000017392	DKC1	100	89.635	Capra_hircus
ENSSSCG00000012823	DKC1	99	91.329	ENSTSYG00000007681	DKC1	99	91.715	Carlito_syrichta
ENSSSCG00000012823	DKC1	84	92.346	ENSCAPG00000003342	DKC1	99	89.640	Cavia_aperea
ENSSSCG00000012823	DKC1	100	89.333	ENSCPOG00000008825	DKC1	100	89.313	Cavia_porcellus
ENSSSCG00000012823	DKC1	100	81.714	ENSCCAG00000027418	DKC1	100	80.952	Cebus_capucinus
ENSSSCG00000012823	DKC1	100	90.286	ENSCATG00000033602	DKC1	100	89.905	Cercocebus_atys
ENSSSCG00000012823	DKC1	99	89.362	ENSCLAG00000000720	DKC1	100	89.189	Chinchilla_lanigera
ENSSSCG00000012823	DKC1	100	90.476	ENSCSAG00000006706	DKC1	100	90.095	Chlorocebus_sabaeus
ENSSSCG00000012823	DKC1	85	89.630	ENSCPBG00000005858	DKC1	93	83.223	Chrysemys_picta_bellii
ENSSSCG00000012823	DKC1	87	74.580	ENSCING00000004599	-	77	77.778	Ciona_intestinalis
ENSSSCG00000012823	DKC1	86	75.604	ENSCSAVG00000010047	-	89	77.330	Ciona_savignyi
ENSSSCG00000012823	DKC1	100	90.476	ENSCANG00000027987	DKC1	100	90.095	Colobus_angolensis_palliatus
ENSSSCG00000012823	DKC1	100	87.595	ENSCGRG00001014574	-	100	87.214	Cricetulus_griseus_chok1gshd
ENSSSCG00000012823	DKC1	96	63.673	ENSCGRG00001016789	-	79	74.865	Cricetulus_griseus_chok1gshd
ENSSSCG00000012823	DKC1	100	87.595	ENSCGRG00000016075	-	100	87.214	Cricetulus_griseus_crigri
ENSSSCG00000012823	DKC1	98	63.281	ENSCGRG00000014809	-	93	64.865	Cricetulus_griseus_crigri
ENSSSCG00000012823	DKC1	84	85.608	ENSCSEG00000012633	dkc1	85	86.181	Cynoglossus_semilaevis
ENSSSCG00000012823	DKC1	83	85.213	ENSCVAG00000010155	dkc1	91	76.017	Cyprinodon_variegatus
ENSSSCG00000012823	DKC1	85	84.466	ENSDARG00000016484	dkc1	97	74.490	Danio_rerio
ENSSSCG00000012823	DKC1	100	89.504	ENSDNOG00000004218	DKC1	100	89.313	Dasypus_novemcinctus
ENSSSCG00000012823	DKC1	63	82.724	ENSDORG00000013566	-	100	82.724	Dipodomys_ordii
ENSSSCG00000012823	DKC1	89	68.182	FBgn0259937	Nop60B	91	66.017	Drosophila_melanogaster
ENSSSCG00000012823	DKC1	83	94.737	ENSETEG00000016095	DKC1	91	86.123	Echinops_telfairi
ENSSSCG00000012823	DKC1	71	78.107	ENSEBUG00000015962	dkc1	99	82.253	Eptatretus_burgeri
ENSSSCG00000012823	DKC1	100	93.090	ENSEASG00005007484	DKC1	100	93.090	Equus_asinus_asinus
ENSSSCG00000012823	DKC1	100	93.090	ENSECAG00000023524	DKC1	100	93.090	Equus_caballus
ENSSSCG00000012823	DKC1	87	90.408	ENSEEUG00000003323	DKC1	100	88.303	Erinaceus_europaeus
ENSSSCG00000012823	DKC1	90	80.093	ENSELUG00000014538	dkc1	90	78.194	Esox_lucius
ENSSSCG00000012823	DKC1	100	90.979	ENSFCAG00000006577	DKC1	100	90.403	Felis_catus
ENSSSCG00000012823	DKC1	88	84.149	ENSFALG00000011496	DKC1	78	86.241	Ficedula_albicollis
ENSSSCG00000012823	DKC1	95	91.904	ENSFDAG00000002516	DKC1	100	89.210	Fukomys_damarensis
ENSSSCG00000012823	DKC1	85	83.902	ENSFHEG00000004627	dkc1	80	84.962	Fundulus_heteroclitus
ENSSSCG00000012823	DKC1	82	83.120	ENSGMOG00000017277	dkc1	100	83.120	Gadus_morhua
ENSSSCG00000012823	DKC1	89	86.150	ENSGALG00000005054	DKC1	78	89.000	Gallus_gallus
ENSSSCG00000012823	DKC1	88	81.473	ENSGAFG00000011486	dkc1	81	75.847	Gambusia_affinis
ENSSSCG00000012823	DKC1	83	86.432	ENSGACG00000004373	dkc1	96	89.058	Gasterosteus_aculeatus
ENSSSCG00000012823	DKC1	85	89.877	ENSGAGG00000011330	DKC1	78	90.500	Gopherus_agassizii
ENSSSCG00000012823	DKC1	100	90.857	ENSGGOG00000001045	DKC1	100	90.476	Gorilla_gorilla
ENSSSCG00000012823	DKC1	88	82.423	ENSHBUG00000012436	dkc1	95	76.160	Haplochromis_burtoni
ENSSSCG00000012823	DKC1	95	91.685	ENSHGLG00000000649	DKC1	100	87.879	Heterocephalus_glaber_female
ENSSSCG00000012823	DKC1	94	91.778	ENSHGLG00100001153	DKC1	100	87.908	Heterocephalus_glaber_male
ENSSSCG00000012823	DKC1	82	86.835	ENSHCOG00000021099	dkc1	79	86.869	Hippocampus_comes
ENSSSCG00000012823	DKC1	86	83.902	ENSIPUG00000010309	dkc1	81	82.660	Ictalurus_punctatus
ENSSSCG00000012823	DKC1	95	92.560	ENSSTOG00000001074	-	96	91.807	Ictidomys_tridecemlineatus
ENSSSCG00000012823	DKC1	100	81.298	ENSSTOG00000020149	-	100	81.298	Ictidomys_tridecemlineatus
ENSSSCG00000012823	DKC1	97	79.921	ENSSTOG00000011904	-	93	79.921	Ictidomys_tridecemlineatus
ENSSSCG00000012823	DKC1	63	83.389	ENSJJAG00000010086	-	100	83.389	Jaculus_jaculus
ENSSSCG00000012823	DKC1	86	82.439	ENSKMAG00000008010	dkc1	93	75.862	Kryptolebias_marmoratus
ENSSSCG00000012823	DKC1	84	84.406	ENSLBEG00000019122	dkc1	82	85.464	Labrus_bergylta
ENSSSCG00000012823	DKC1	86	85.337	ENSLACG00000014025	DKC1	91	87.940	Latimeria_chalumnae
ENSSSCG00000012823	DKC1	84	86.634	ENSLOCG00000013713	dkc1	80	88.860	Lepisosteus_oculatus
ENSSSCG00000012823	DKC1	89	93.868	ENSLAFG00000000221	DKC1	93	88.115	Loxodonta_africana
ENSSSCG00000012823	DKC1	100	90.476	ENSMFAG00000032398	DKC1	86	90.095	Macaca_fascicularis
ENSSSCG00000012823	DKC1	100	90.476	ENSMMUG00000005768	DKC1	100	90.095	Macaca_mulatta
ENSSSCG00000012823	DKC1	100	90.476	ENSMNEG00000034503	DKC1	100	90.095	Macaca_nemestrina
ENSSSCG00000012823	DKC1	100	90.476	ENSMLEG00000034422	DKC1	100	90.095	Mandrillus_leucophaeus
ENSSSCG00000012823	DKC1	84	85.856	ENSMAMG00000005427	dkc1	89	87.121	Mastacembelus_armatus
ENSSSCG00000012823	DKC1	88	82.660	ENSMZEG00005014503	dkc1	95	76.371	Maylandia_zebra
ENSSSCG00000012823	DKC1	81	85.861	ENSMGAG00000009238	DKC1	85	83.292	Meleagris_gallopavo
ENSSSCG00000012823	DKC1	63	83.056	ENSMAUG00000016454	-	100	83.056	Mesocricetus_auratus
ENSSSCG00000012823	DKC1	100	89.675	ENSMICG00000038751	-	100	89.866	Microcebus_murinus
ENSSSCG00000012823	DKC1	89	79.274	ENSMICG00000002818	-	99	82.466	Microcebus_murinus
ENSSSCG00000012823	DKC1	63	80.066	ENSMOCG00000001169	-	100	80.066	Microtus_ochrogaster
ENSSSCG00000012823	DKC1	83	85.678	ENSMMOG00000020348	dkc1	87	85.678	Mola_mola
ENSSSCG00000012823	DKC1	85	89.630	ENSMODG00000009243	DKC1	69	91.371	Monodelphis_domestica
ENSSSCG00000012823	DKC1	87	81.604	ENSMALG00000009454	dkc1	79	85.464	Monopterus_albus
ENSSSCG00000012823	DKC1	100	77.925	MGP_CAROLIEiJ_G0033191	Dkc1	100	92.617	Mus_caroli
ENSSSCG00000012823	DKC1	100	87.763	ENSMUSG00000031403	Dkc1	100	87.572	Mus_musculus
ENSSSCG00000012823	DKC1	98	88.109	MGP_PahariEiJ_G0031735	Dkc1	100	87.165	Mus_pahari
ENSSSCG00000012823	DKC1	100	87.380	MGP_SPRETEiJ_G0034351	Dkc1	100	86.233	Mus_spretus
ENSSSCG00000012823	DKC1	95	93.654	ENSMPUG00000016136	DKC1	96	91.522	Mustela_putorius_furo
ENSSSCG00000012823	DKC1	91	90.345	ENSMLUG00000011918	DKC1	100	83.932	Myotis_lucifugus
ENSSSCG00000012823	DKC1	63	83.056	ENSNGAG00000015724	-	100	83.056	Nannospalax_galili
ENSSSCG00000012823	DKC1	83	86.869	ENSNBRG00000005638	dkc1	81	86.250	Neolamprologus_brichardi
ENSSSCG00000012823	DKC1	100	90.667	ENSNLEG00000014323	DKC1	100	90.286	Nomascus_leucogenys
ENSSSCG00000012823	DKC1	86	85.437	ENSMEUG00000001066	DKC1	87	86.717	Notamacropus_eugenii
ENSSSCG00000012823	DKC1	76	88.798	ENSOPRG00000005248	DKC1	73	88.798	Ochotona_princeps
ENSSSCG00000012823	DKC1	63	84.385	ENSODEG00000000549	-	100	84.385	Octodon_degus
ENSSSCG00000012823	DKC1	91	94.037	ENSODEG00000011816	-	100	85.988	Octodon_degus
ENSSSCG00000012823	DKC1	91	80.594	ENSONIG00000013889	dkc1	94	76.695	Oreochromis_niloticus
ENSSSCG00000012823	DKC1	58	62.500	ENSOANG00000022295	-	85	62.102	Ornithorhynchus_anatinus
ENSSSCG00000012823	DKC1	89	88.028	ENSOANG00000008713	-	89	86.652	Ornithorhynchus_anatinus
ENSSSCG00000012823	DKC1	97	90.335	ENSOCUG00000012646	DKC1	100	89.143	Oryctolagus_cuniculus
ENSSSCG00000012823	DKC1	89	80.516	ENSORLG00000018748	dkc1	79	84.925	Oryzias_latipes
ENSSSCG00000012823	DKC1	86	83.051	ENSOMEG00000005786	dkc1	82	84.937	Oryzias_melastigma
ENSSSCG00000012823	DKC1	97	90.730	ENSOGAG00000003399	DKC1	97	90.730	Otolemur_garnettii
ENSSSCG00000012823	DKC1	99	89.147	ENSOARG00000003047	DKC1	99	89.341	Ovis_aries
ENSSSCG00000012823	DKC1	100	90.667	ENSPPAG00000023820	DKC1	100	90.286	Pan_paniscus
ENSSSCG00000012823	DKC1	93	94.407	ENSPPRG00000009104	DKC1	100	90.787	Panthera_pardus
ENSSSCG00000012823	DKC1	87	97.349	ENSPTIG00000017469	DKC1	99	89.126	Panthera_tigris_altaica
ENSSSCG00000012823	DKC1	100	90.857	ENSPTRG00000022449	DKC1	100	90.476	Pan_troglodytes
ENSSSCG00000012823	DKC1	97	91.535	ENSPTRG00000043416	-	84	90.748	Pan_troglodytes
ENSSSCG00000012823	DKC1	100	90.476	ENSPANG00000011978	DKC1	100	90.095	Papio_anubis
ENSSSCG00000012823	DKC1	90	81.422	ENSPKIG00000008443	dkc1	84	87.089	Paramormyrops_kingsleyae
ENSSSCG00000012823	DKC1	77	90.054	ENSPSIG00000013765	DKC1	86	92.737	Pelodiscus_sinensis
ENSSSCG00000012823	DKC1	83	82.323	ENSPMGG00000004097	dkc1	73	82.323	Periophthalmus_magnuspinnatus
ENSSSCG00000012823	DKC1	81	95.918	ENSPEMG00000013348	Dkc1	100	95.918	Peromyscus_maniculatus_bairdii
ENSSSCG00000012823	DKC1	91	88.249	ENSPCIG00000016706	DKC1	71	89.786	Phascolarctos_cinereus
ENSSSCG00000012823	DKC1	88	81.754	ENSPFOG00000018653	dkc1	79	85.894	Poecilia_formosa
ENSSSCG00000012823	DKC1	88	81.754	ENSPLAG00000003272	dkc1	72	85.894	Poecilia_latipinna
ENSSSCG00000012823	DKC1	85	84.146	ENSPMEG00000010413	dkc1	79	85.894	Poecilia_mexicana
ENSSSCG00000012823	DKC1	84	85.750	ENSPREG00000004100	dkc1	89	75.208	Poecilia_reticulata
ENSSSCG00000012823	DKC1	99	90.751	ENSPPYG00000020892	DKC1	100	90.366	Pongo_abelii
ENSSSCG00000012823	DKC1	78	93.583	ENSPCAG00000015034	DKC1	71	94.780	Procavia_capensis
ENSSSCG00000012823	DKC1	100	89.714	ENSPCOG00000026874	DKC1	100	89.524	Propithecus_coquereli
ENSSSCG00000012823	DKC1	99	89.038	ENSPVAG00000009222	DKC1	99	89.038	Pteropus_vampyrus
ENSSSCG00000012823	DKC1	83	86.364	ENSPNYG00000020063	dkc1	80	85.750	Pundamilia_nyererei
ENSSSCG00000012823	DKC1	92	82.086	ENSPNAG00000005780	dkc1	83	83.933	Pygocentrus_nattereri
ENSSSCG00000012823	DKC1	92	86.937	ENSRNOG00000055562	Dkc1	97	80.517	Rattus_norvegicus
ENSSSCG00000012823	DKC1	100	90.476	ENSRBIG00000028457	DKC1	86	90.095	Rhinopithecus_bieti
ENSSSCG00000012823	DKC1	100	90.476	ENSRROG00000044780	DKC1	100	90.095	Rhinopithecus_roxellana
ENSSSCG00000012823	DKC1	83	68.766	YLR175W	-	98	62.633	Saccharomyces_cerevisiae
ENSSSCG00000012823	DKC1	100	90.114	ENSSBOG00000033746	DKC1	100	89.544	Saimiri_boliviensis_boliviensis
ENSSSCG00000012823	DKC1	86	89.320	ENSSHAG00000002463	DKC1	92	83.002	Sarcophilus_harrisii
ENSSSCG00000012823	DKC1	95	79.870	ENSSFOG00015009585	dkc1	82	85.273	Scleropages_formosus
ENSSSCG00000012823	DKC1	89	82.517	ENSSMAG00000002552	dkc1	79	87.980	Scophthalmus_maximus
ENSSSCG00000012823	DKC1	85	85.432	ENSSDUG00000009963	dkc1	83	84.286	Seriola_dumerili
ENSSSCG00000012823	DKC1	85	84.841	ENSSLDG00000019342	dkc1	83	86.717	Seriola_lalandi_dorsalis
ENSSSCG00000012823	DKC1	95	83.434	ENSSARG00000001822	DKC1	96	83.434	Sorex_araneus
ENSSSCG00000012823	DKC1	91	85.092	ENSSPUG00000018907	DKC1	85	83.149	Sphenodon_punctatus
ENSSSCG00000012823	DKC1	82	86.582	ENSSPAG00000002585	dkc1	76	86.181	Stegastes_partitus
ENSSSCG00000012823	DKC1	81	86.528	ENSTGUG00000006781	DKC1	88	82.801	Taeniopygia_guttata
ENSSSCG00000012823	DKC1	85	84.804	ENSTRUG00000004413	dkc1	96	75.301	Takifugu_rubripes
ENSSSCG00000012823	DKC1	93	60.484	ENSTNIG00000002582	dkc1	94	60.887	Tetraodon_nigroviridis
ENSSSCG00000012823	DKC1	71	86.863	ENSTBEG00000011262	DKC1	100	86.595	Tupaia_belangeri
ENSSSCG00000012823	DKC1	68	99.278	ENSTTRG00000008089	DKC1	70	99.278	Tursiops_truncatus
ENSSSCG00000012823	DKC1	95	93.819	ENSUAMG00000022721	DKC1	95	94.013	Ursus_americanus
ENSSSCG00000012823	DKC1	95	93.598	ENSUMAG00000016899	DKC1	93	97.098	Ursus_maritimus
ENSSSCG00000012823	DKC1	93	77.506	ENSVVUG00000021671	-	91	73.161	Vulpes_vulpes
ENSSSCG00000012823	DKC1	99	90.996	ENSVVUG00000020734	-	89	90.996	Vulpes_vulpes
ENSSSCG00000012823	DKC1	86	86.650	ENSXETG00000032517	DKC1	95	76.939	Xenopus_tropicalis
ENSSSCG00000012823	DKC1	84	85.250	ENSXCOG00000005498	dkc1	91	81.412	Xiphophorus_couchianus
ENSSSCG00000012823	DKC1	88	81.517	ENSXMAG00000004919	dkc1	95	76.221	Xiphophorus_maculatus