EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000012957 (Gene tree)
Gene ID: 100522004
Gene Symbol: SF3B2
Alias: Cus1|SAP145|SF3b1|SF3b145
Full Name: splicing factor 3b subunit 2
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 16130 bases
Position: chr2:6277487-6293616
Accession: 100522004
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000057180	DUF382	PF04037.13	1.5e-59	1	1
ENSSSCP00000013776	DUF382	PF04037.13	1.9e-59	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000014162	SF3B2-201	4420	XM_003122505	ENSSSCP00000013776	895 (aa)	XP_003122553	F1RU38
ENSSSCT00000053424	SF3B2-202	5602	-	ENSSSCP00000057180	777 (aa)	-	A0A287BLY0

Gene Model

Click here to download ENSSSCG00000012957's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000012957's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000012957	SF3B2	100	97.216	ENSG00000087365	SF3B2	99	99.683	Homo_sapiens
ENSSSCG00000012957	SF3B2	97	65.897	ENSAPOG00000001974	sf3b2	82	74.560	Acanthochromis_polyacanthus
ENSSSCG00000012957	SF3B2	100	98.662	ENSAMEG00000017206	SF3B2	100	98.662	Ailuropoda_melanoleuca
ENSSSCG00000012957	SF3B2	97	65.229	ENSACIG00000000624	sf3b2	87	74.382	Amphilophus_citrinellus
ENSSSCG00000012957	SF3B2	97	67.592	ENSAOCG00000009207	sf3b2	86	75.359	Amphiprion_ocellaris
ENSSSCG00000012957	SF3B2	97	68.090	ENSAPEG00000002762	sf3b2	84	75.489	Amphiprion_percula
ENSSSCG00000012957	SF3B2	100	66.411	ENSACAG00000008615	SF3B2	100	66.850	Anolis_carolinensis
ENSSSCG00000012957	SF3B2	100	97.108	ENSANAG00000029120	SF3B2	100	97.108	Aotus_nancymaae
ENSSSCG00000012957	SF3B2	85	73.773	ENSACLG00000014771	sf3b2	87	75.591	Astatotilapia_calliptera
ENSSSCG00000012957	SF3B2	97	65.535	ENSAMXG00000007929	sf3b2	86	77.551	Astyanax_mexicanus
ENSSSCG00000012957	SF3B2	100	98.214	ENSBTAG00000002778	SF3B2	100	98.214	Bos_taurus
ENSSSCG00000012957	SF3B2	59	51.060	WBGene00021004	sftb-2	89	51.825	Caenorhabditis_elegans
ENSSSCG00000012957	SF3B2	100	97.219	ENSCJAG00000001656	SF3B2	100	97.219	Callithrix_jacchus
ENSSSCG00000012957	SF3B2	100	98.771	ENSCAFG00000013033	SF3B2	100	98.771	Canis_familiaris
ENSSSCG00000012957	SF3B2	100	98.771	ENSCAFG00020015382	SF3B2	100	98.771	Canis_lupus_dingo
ENSSSCG00000012957	SF3B2	100	98.324	ENSCHIG00000011211	SF3B2	100	98.324	Capra_hircus
ENSSSCG00000012957	SF3B2	100	96.993	ENSTSYG00000000959	SF3B2	100	96.993	Carlito_syrichta
ENSSSCG00000012957	SF3B2	71	78.947	ENSCAPG00000006065	SF3B2	93	100.000	Cavia_aperea
ENSSSCG00000012957	SF3B2	100	93.974	ENSCPOG00000008294	SF3B2	100	93.995	Cavia_porcellus
ENSSSCG00000012957	SF3B2	100	97.219	ENSCCAG00000035256	SF3B2	100	97.219	Cebus_capucinus
ENSSSCG00000012957	SF3B2	100	97.327	ENSCATG00000042240	SF3B2	100	97.327	Cercocebus_atys
ENSSSCG00000012957	SF3B2	100	95.434	ENSCLAG00000016852	SF3B2	100	95.434	Chinchilla_lanigera
ENSSSCG00000012957	SF3B2	100	97.327	ENSCSAG00000008121	SF3B2	100	97.327	Chlorocebus_sabaeus
ENSSSCG00000012957	SF3B2	91	99.485	ENSCHOG00000001476	SF3B2	92	91.237	Choloepus_hoffmanni
ENSSSCG00000012957	SF3B2	100	74.280	ENSCPBG00000022465	SF3B2	87	88.401	Chrysemys_picta_bellii
ENSSSCG00000012957	SF3B2	72	60.429	ENSCING00000005665	-	99	60.063	Ciona_intestinalis
ENSSSCG00000012957	SF3B2	70	59.875	ENSCSAVG00000002029	-	99	59.779	Ciona_savignyi
ENSSSCG00000012957	SF3B2	100	97.327	ENSCANG00000039680	SF3B2	100	97.327	Colobus_angolensis_palliatus
ENSSSCG00000012957	SF3B2	100	95.657	ENSCGRG00001015741	Sf3b2	100	95.657	Cricetulus_griseus_chok1gshd
ENSSSCG00000012957	SF3B2	100	95.657	ENSCGRG00000018110	Sf3b2	100	95.657	Cricetulus_griseus_crigri
ENSSSCG00000012957	SF3B2	74	75.299	ENSCSEG00000000230	sf3b2	78	78.707	Cynoglossus_semilaevis
ENSSSCG00000012957	SF3B2	84	71.654	ENSCVAG00000003357	sf3b2	85	72.229	Cyprinodon_variegatus
ENSSSCG00000012957	SF3B2	79	74.412	ENSDARG00000018049	sf3b2	86	73.691	Danio_rerio
ENSSSCG00000012957	SF3B2	100	96.536	ENSDNOG00000009484	SF3B2	100	96.536	Dasypus_novemcinctus
ENSSSCG00000012957	SF3B2	100	94.883	ENSDORG00000002495	Sf3b2	100	94.883	Dipodomys_ordii
ENSSSCG00000012957	SF3B2	84	88.889	ENSETEG00000020284	SF3B2	85	88.759	Echinops_telfairi
ENSSSCG00000012957	SF3B2	98	59.032	ENSEBUG00000013703	sf3b2	99	59.653	Eptatretus_burgeri
ENSSSCG00000012957	SF3B2	100	98.549	ENSEASG00005004508	SF3B2	100	98.549	Equus_asinus_asinus
ENSSSCG00000012957	SF3B2	100	98.549	ENSECAG00000024461	SF3B2	100	98.549	Equus_caballus
ENSSSCG00000012957	SF3B2	60	100.000	ENSEEUG00000014278	-	60	100.000	Erinaceus_europaeus
ENSSSCG00000012957	SF3B2	97	67.174	ENSELUG00000005586	sf3b2	86	71.925	Esox_lucius
ENSSSCG00000012957	SF3B2	100	98.883	ENSFCAG00000013289	SF3B2	100	98.883	Felis_catus
ENSSSCG00000012957	SF3B2	78	70.739	ENSFALG00000014653	SF3B2	98	68.600	Ficedula_albicollis
ENSSSCG00000012957	SF3B2	100	96.678	ENSFDAG00000019806	SF3B2	100	96.678	Fukomys_damarensis
ENSSSCG00000012957	SF3B2	84	70.078	ENSFHEG00000020968	sf3b2	86	71.725	Fundulus_heteroclitus
ENSSSCG00000012957	SF3B2	72	77.744	ENSGMOG00000012131	sf3b2	96	80.975	Gadus_morhua
ENSSSCG00000012957	SF3B2	97	67.226	ENSGAFG00000001675	sf3b2	86	71.762	Gambusia_affinis
ENSSSCG00000012957	SF3B2	72	79.231	ENSGACG00000019012	sf3b2	96	80.126	Gasterosteus_aculeatus
ENSSSCG00000012957	SF3B2	100	81.153	ENSGAGG00000023916	SF3B2	86	84.100	Gopherus_agassizii
ENSSSCG00000012957	SF3B2	100	97.216	ENSGGOG00000028448	SF3B2	100	99.717	Gorilla_gorilla
ENSSSCG00000012957	SF3B2	85	73.609	ENSHBUG00000017349	sf3b2	87	75.591	Haplochromis_burtoni
ENSSSCG00000012957	SF3B2	100	95.323	ENSHGLG00000010807	SF3B2	100	95.323	Heterocephalus_glaber_female
ENSSSCG00000012957	SF3B2	100	97.216	ENSHGLG00100006361	SF3B2	100	97.216	Heterocephalus_glaber_male
ENSSSCG00000012957	SF3B2	97	66.025	ENSHCOG00000016203	sf3b2	97	65.459	Hippocampus_comes
ENSSSCG00000012957	SF3B2	81	72.874	ENSIPUG00000009383	sf3b2	85	72.149	Ictalurus_punctatus
ENSSSCG00000012957	SF3B2	100	97.439	ENSSTOG00000028892	SF3B2	100	97.439	Ictidomys_tridecemlineatus
ENSSSCG00000012957	SF3B2	100	95.450	ENSJJAG00000018193	Sf3b2	100	95.450	Jaculus_jaculus
ENSSSCG00000012957	SF3B2	59	88.158	ENSKMAG00000020181	sf3b2	84	73.879	Kryptolebias_marmoratus
ENSSSCG00000012957	SF3B2	97	68.799	ENSLBEG00000027739	sf3b2	88	78.438	Labrus_bergylta
ENSSSCG00000012957	SF3B2	100	95.754	ENSLAFG00000002128	SF3B2	100	95.754	Loxodonta_africana
ENSSSCG00000012957	SF3B2	100	97.219	ENSMFAG00000003064	SF3B2	100	97.219	Macaca_fascicularis
ENSSSCG00000012957	SF3B2	100	93.520	ENSMMUG00000011743	SF3B2	100	93.520	Macaca_mulatta
ENSSSCG00000012957	SF3B2	100	97.216	ENSMNEG00000034437	SF3B2	100	97.216	Macaca_nemestrina
ENSSSCG00000012957	SF3B2	100	97.216	ENSMLEG00000029373	SF3B2	100	97.216	Mandrillus_leucophaeus
ENSSSCG00000012957	SF3B2	84	75.065	ENSMAMG00000014103	sf3b2	86	75.486	Mastacembelus_armatus
ENSSSCG00000012957	SF3B2	85	73.773	ENSMZEG00005020789	sf3b2	86	75.591	Maylandia_zebra
ENSSSCG00000012957	SF3B2	65	98.333	ENSMAUG00000017040	Sf3b2	100	98.333	Mesocricetus_auratus
ENSSSCG00000012957	SF3B2	100	96.993	ENSMICG00000008565	-	100	96.993	Microcebus_murinus
ENSSSCG00000012957	SF3B2	100	93.980	ENSMICG00000016942	-	97	93.980	Microcebus_murinus
ENSSSCG00000012957	SF3B2	100	95.323	ENSMOCG00000003136	Sf3b2	100	95.323	Microtus_ochrogaster
ENSSSCG00000012957	SF3B2	97	66.136	ENSMMOG00000012928	sf3b2	86	72.011	Mola_mola
ENSSSCG00000012957	SF3B2	87	91.913	ENSMODG00000008490	-	92	92.257	Monodelphis_domestica
ENSSSCG00000012957	SF3B2	71	88.189	ENSMODG00000025020	-	99	87.244	Monodelphis_domestica
ENSSSCG00000012957	SF3B2	80	72.033	ENSMALG00000015137	sf3b2	84	73.324	Monopterus_albus
ENSSSCG00000012957	SF3B2	100	94.655	MGP_CAROLIEiJ_G0022539	Sf3b2	100	94.655	Mus_caroli
ENSSSCG00000012957	SF3B2	100	95.212	ENSMUSG00000024853	Sf3b2	100	95.212	Mus_musculus
ENSSSCG00000012957	SF3B2	100	94.989	MGP_PahariEiJ_G0014036	Sf3b2	100	94.989	Mus_pahari
ENSSSCG00000012957	SF3B2	100	95.100	MGP_SPRETEiJ_G0023453	Sf3b2	100	95.100	Mus_spretus
ENSSSCG00000012957	SF3B2	100	98.659	ENSMPUG00000011349	SF3B2	100	98.659	Mustela_putorius_furo
ENSSSCG00000012957	SF3B2	100	97.656	ENSMLUG00000011136	SF3B2	100	97.656	Myotis_lucifugus
ENSSSCG00000012957	SF3B2	100	95.434	ENSNGAG00000012103	Sf3b2	100	95.434	Nannospalax_galili
ENSSSCG00000012957	SF3B2	84	93.995	ENSNLEG00000006007	SF3B2	100	90.450	Nomascus_leucogenys
ENSSSCG00000012957	SF3B2	86	93.466	ENSMEUG00000000019	SF3B2	91	93.466	Notamacropus_eugenii
ENSSSCG00000012957	SF3B2	100	94.231	ENSODEG00000017764	SF3B2	100	91.759	Octodon_degus
ENSSSCG00000012957	SF3B2	97	67.379	ENSONIG00000013068	sf3b2	86	75.357	Oreochromis_niloticus
ENSSSCG00000012957	SF3B2	87	79.648	ENSOANG00000012482	SF3B2	97	79.216	Ornithorhynchus_anatinus
ENSSSCG00000012957	SF3B2	71	63.243	ENSOCUG00000024154	-	95	66.406	Oryctolagus_cuniculus
ENSSSCG00000012957	SF3B2	100	91.871	ENSOCUG00000015722	-	100	91.871	Oryctolagus_cuniculus
ENSSSCG00000012957	SF3B2	97	68.415	ENSORLG00000008235	sf3b2	85	75.033	Oryzias_latipes
ENSSSCG00000012957	SF3B2	97	68.415	ENSORLG00020005357	sf3b2	88	75.033	Oryzias_latipes_hni
ENSSSCG00000012957	SF3B2	97	68.529	ENSORLG00015022454	sf3b2	82	78.639	Oryzias_latipes_hsok
ENSSSCG00000012957	SF3B2	87	71.831	ENSOMEG00000017480	sf3b2	88	74.376	Oryzias_melastigma
ENSSSCG00000012957	SF3B2	100	91.203	ENSOGAG00000005799	SF3B2	100	91.759	Otolemur_garnettii
ENSSSCG00000012957	SF3B2	100	91.787	ENSOARG00000002125	SF3B2	100	98.231	Ovis_aries
ENSSSCG00000012957	SF3B2	100	97.216	ENSPPAG00000007359	SF3B2	100	97.216	Pan_paniscus
ENSSSCG00000012957	SF3B2	100	98.883	ENSPPRG00000013334	SF3B2	100	98.883	Panthera_pardus
ENSSSCG00000012957	SF3B2	100	98.771	ENSPTIG00000015022	SF3B2	100	98.771	Panthera_tigris_altaica
ENSSSCG00000012957	SF3B2	100	97.216	ENSPTRG00000003912	SF3B2	100	97.216	Pan_troglodytes
ENSSSCG00000012957	SF3B2	100	97.327	ENSPANG00000008593	SF3B2	100	97.327	Papio_anubis
ENSSSCG00000012957	SF3B2	97	68.715	ENSPKIG00000016576	sf3b2	86	80.063	Paramormyrops_kingsleyae
ENSSSCG00000012957	SF3B2	93	82.681	ENSPSIG00000003158	SF3B2	100	87.844	Pelodiscus_sinensis
ENSSSCG00000012957	SF3B2	84	68.684	ENSPMGG00000000819	sf3b2	86	68.421	Periophthalmus_magnuspinnatus
ENSSSCG00000012957	SF3B2	100	95.546	ENSPEMG00000015437	Sf3b2	100	95.546	Peromyscus_maniculatus_bairdii
ENSSSCG00000012957	SF3B2	93	80.240	ENSPEMG00000015451	-	91	82.021	Peromyscus_maniculatus_bairdii
ENSSSCG00000012957	SF3B2	100	89.879	ENSPCIG00000008381	SF3B2	100	89.989	Phascolarctos_cinereus
ENSSSCG00000012957	SF3B2	97	66.227	ENSPFOG00000002552	sf3b2	86	71.373	Poecilia_formosa
ENSSSCG00000012957	SF3B2	97	66.337	ENSPLAG00000001471	sf3b2	86	71.503	Poecilia_latipinna
ENSSSCG00000012957	SF3B2	97	65.017	ENSPMEG00000013180	sf3b2	86	72.668	Poecilia_mexicana
ENSSSCG00000012957	SF3B2	84	70.779	ENSPREG00000002665	sf3b2	86	72.093	Poecilia_reticulata
ENSSSCG00000012957	SF3B2	86	94.807	ENSPPYG00000003034	-	99	94.807	Pongo_abelii
ENSSSCG00000012957	SF3B2	100	97.207	ENSPCAG00000005129	SF3B2	100	97.207	Procavia_capensis
ENSSSCG00000012957	SF3B2	100	97.216	ENSPCOG00000025375	SF3B2	100	97.216	Propithecus_coquereli
ENSSSCG00000012957	SF3B2	69	99.561	ENSPVAG00000005466	-	88	99.561	Pteropus_vampyrus
ENSSSCG00000012957	SF3B2	55	99.299	ENSPVAG00000016975	-	55	99.299	Pteropus_vampyrus
ENSSSCG00000012957	SF3B2	80	74.480	ENSPNYG00000023594	sf3b2	92	75.035	Pundamilia_nyererei
ENSSSCG00000012957	SF3B2	86	72.137	ENSPNAG00000001891	sf3b2	86	73.711	Pygocentrus_nattereri
ENSSSCG00000012957	SF3B2	100	95.212	ENSRNOG00000020412	Sf3b2	100	95.212	Rattus_norvegicus
ENSSSCG00000012957	SF3B2	100	97.216	ENSRBIG00000034065	SF3B2	100	97.216	Rhinopithecus_bieti
ENSSSCG00000012957	SF3B2	100	97.216	ENSRROG00000034496	SF3B2	100	97.216	Rhinopithecus_roxellana
ENSSSCG00000012957	SF3B2	100	92.409	ENSSBOG00000026337	SF3B2	87	94.942	Saimiri_boliviensis_boliviensis
ENSSSCG00000012957	SF3B2	96	68.614	ENSSHAG00000018043	-	89	72.692	Sarcophilus_harrisii
ENSSSCG00000012957	SF3B2	100	82.443	ENSSHAG00000010933	-	100	84.420	Sarcophilus_harrisii
ENSSSCG00000012957	SF3B2	97	68.252	ENSSFOG00015021125	sf3b2	86	75.258	Scleropages_formosus
ENSSSCG00000012957	SF3B2	84	74.376	ENSSMAG00000004079	sf3b2	88	75.616	Scophthalmus_maximus
ENSSSCG00000012957	SF3B2	59	88.615	ENSSDUG00000008499	sf3b2	85	71.632	Seriola_dumerili
ENSSSCG00000012957	SF3B2	59	88.615	ENSSLDG00000006838	sf3b2	86	75.096	Seriola_lalandi_dorsalis
ENSSSCG00000012957	SF3B2	68	99.206	ENSSARG00000003707	-	68	99.206	Sorex_araneus
ENSSSCG00000012957	SF3B2	100	80.089	ENSSPUG00000009198	SF3B2	85	83.968	Sphenodon_punctatus
ENSSSCG00000012957	SF3B2	97	65.435	ENSSPAG00000004406	sf3b2	86	74.936	Stegastes_partitus
ENSSSCG00000012957	SF3B2	97	56.621	ENSTRUG00000007611	sf3b2	88	71.763	Takifugu_rubripes
ENSSSCG00000012957	SF3B2	86	68.886	ENSTNIG00000007441	sf3b2	85	70.985	Tetraodon_nigroviridis
ENSSSCG00000012957	SF3B2	89	95.349	ENSTBEG00000004258	SF3B2	82	99.286	Tupaia_belangeri
ENSSSCG00000012957	SF3B2	100	98.659	ENSTTRG00000014339	SF3B2	100	98.659	Tursiops_truncatus
ENSSSCG00000012957	SF3B2	100	98.713	ENSUAMG00000020754	SF3B2	99	98.284	Ursus_americanus
ENSSSCG00000012957	SF3B2	100	98.883	ENSUMAG00000010994	SF3B2	100	98.883	Ursus_maritimus
ENSSSCG00000012957	SF3B2	67	99.153	ENSVPAG00000008695	SF3B2	72	99.153	Vicugna_pacos
ENSSSCG00000012957	SF3B2	100	98.659	ENSVVUG00000027029	SF3B2	100	98.659	Vulpes_vulpes
ENSSSCG00000012957	SF3B2	87	70.342	ENSXETG00000008422	sf3b2	87	77.810	Xenopus_tropicalis
ENSSSCG00000012957	SF3B2	70	78.413	ENSXCOG00000008943	sf3b2	84	78.095	Xiphophorus_couchianus
ENSSSCG00000012957	SF3B2	59	87.736	ENSXMAG00000008467	sf3b2	86	71.005	Xiphophorus_maculatus