EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000013021 (Gene tree)
Gene ID: 100523886
Gene Symbol: SF1
Alias: ZCCHC25|ZFM1|ZNF162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 13887 bases
Position: chr2:7391062-7404948
Accession: 100523886
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000013846	KH_1	PF00013.29	3.3e-07	1	1
ENSSSCP00000057612	KH_1	PF00013.29	3.3e-07	1	1
ENSSSCP00000051912	KH_1	PF00013.29	3.6e-07	1	1
ENSSSCP00000049141	KH_1	PF00013.29	4.3e-07	1	1
ENSSSCP00000053679	KH_1	PF00013.29	4.4e-07	1	1
ENSSSCP00000013846	zf-CCHC	PF00098.23	0.00022	1	1
ENSSSCP00000057612	zf-CCHC	PF00098.23	0.00022	1	1
ENSSSCP00000051912	zf-CCHC	PF00098.23	0.00024	1	1
ENSSSCP00000053679	zf-CCHC	PF00098.23	0.00029	1	1
ENSSSCP00000049141	zf-CCHC	PF00098.23	0.00029	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000046089	SF1-204	3061	-	ENSSSCP00000053679	638 (aa)	-	A0A287BC34
ENSSSCT00000059278	SF1-203	2875	XM_003122587	ENSSSCP00000051912	548 (aa)	XP_003122635	A0A287B6I2
ENSSSCT00000014232	SF1-202	2270	-	ENSSSCP00000013846	524 (aa)	-	F1RQR0
ENSSSCT00000062179	SF1-205	4145	-	ENSSSCP00000057612	524 (aa)	-	F1RQR0
ENSSSCT00000062161	SF1-201	3514	-	ENSSSCP00000049141	639 (aa)	-	A0A287AZ25

Gene Model

Click here to download ENSSSCG00000013021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000013021's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000013021	SF1	69	80.928	ENSAPOG00000012341	sf1	60	77.049	Acanthochromis_polyacanthus
ENSSSCG00000013021	SF1	95	99.424	ENSAMEG00000017828	SF1	91	94.737	Ailuropoda_melanoleuca
ENSSSCG00000013021	SF1	58	83.245	ENSACIG00000016514	sf1	62	76.291	Amphilophus_citrinellus
ENSSSCG00000013021	SF1	69	80.155	ENSAOCG00000010934	sf1	61	76.815	Amphiprion_ocellaris
ENSSSCG00000013021	SF1	69	80.155	ENSAPEG00000009498	sf1	61	76.815	Amphiprion_percula
ENSSSCG00000013021	SF1	58	82.632	ENSATEG00000001894	sf1	60	77.327	Anabas_testudineus
ENSSSCG00000013021	SF1	100	99.687	ENSANAG00000026664	-	100	99.687	Aotus_nancymaae
ENSSSCG00000013021	SF1	97	88.780	ENSANAG00000022607	-	99	87.396	Aotus_nancymaae
ENSSSCG00000013021	SF1	67	84.282	ENSACLG00000007633	sf1	61	78.177	Astatotilapia_calliptera
ENSSSCG00000013021	SF1	67	86.364	ENSAMXG00000003630	sf1	50	79.462	Astyanax_mexicanus
ENSSSCG00000013021	SF1	100	99.844	ENSBTAG00000001035	SF1	100	99.844	Bos_taurus
ENSSSCG00000013021	SF1	100	99.844	ENSCJAG00000002780	SF1	100	99.844	Callithrix_jacchus
ENSSSCG00000013021	SF1	100	99.687	ENSCAFG00000014239	SF1	100	99.687	Canis_familiaris
ENSSSCG00000013021	SF1	100	99.844	ENSCAFG00020014381	SF1	100	99.844	Canis_lupus_dingo
ENSSSCG00000013021	SF1	100	99.844	ENSCHIG00000025867	SF1	100	99.844	Capra_hircus
ENSSSCG00000013021	SF1	51	98.925	ENSTSYG00000033618	SF1	82	98.925	Carlito_syrichta
ENSSSCG00000013021	SF1	80	98.636	ENSCAPG00000010762	SF1	100	78.730	Cavia_aperea
ENSSSCG00000013021	SF1	98	99.628	ENSCPOG00000012290	SF1	100	99.628	Cavia_porcellus
ENSSSCG00000013021	SF1	100	99.687	ENSCCAG00000037881	SF1	100	99.687	Cebus_capucinus
ENSSSCG00000013021	SF1	96	84.820	ENSCCAG00000023781	-	94	84.982	Cebus_capucinus
ENSSSCG00000013021	SF1	100	99.844	ENSCATG00000011564	SF1	100	99.844	Cercocebus_atys
ENSSSCG00000013021	SF1	100	99.818	ENSCSAG00000007258	SF1	100	99.818	Chlorocebus_sabaeus
ENSSSCG00000013021	SF1	75	93.447	ENSCHOG00000006008	SF1	79	93.541	Choloepus_hoffmanni
ENSSSCG00000013021	SF1	94	86.654	ENSCPBG00000023763	SF1	66	85.300	Chrysemys_picta_bellii
ENSSSCG00000013021	SF1	69	58.115	ENSCING00000005564	-	74	60.638	Ciona_intestinalis
ENSSSCG00000013021	SF1	93	53.372	ENSCSAVG00000009055	-	56	66.667	Ciona_savignyi
ENSSSCG00000013021	SF1	100	99.844	ENSCANG00000042201	SF1	100	99.844	Colobus_angolensis_palliatus
ENSSSCG00000013021	SF1	100	99.427	ENSCGRG00001003677	Sf1	100	99.374	Cricetulus_griseus_chok1gshd
ENSSSCG00000013021	SF1	98	99.069	ENSCGRG00000001708	Sf1	99	99.069	Cricetulus_griseus_crigri
ENSSSCG00000013021	SF1	62	78.818	ENSCSEG00000014375	sf1	57	76.316	Cynoglossus_semilaevis
ENSSSCG00000013021	SF1	68	84.324	ENSCVAG00000001670	sf1	63	78.729	Cyprinodon_variegatus
ENSSSCG00000013021	SF1	79	81.390	ENSDARG00000008188	sf1	72	78.788	Danio_rerio
ENSSSCG00000013021	SF1	100	99.635	ENSDNOG00000001282	SF1	100	99.635	Dasypus_novemcinctus
ENSSSCG00000013021	SF1	100	99.844	ENSDORG00000016334	Sf1	100	99.844	Dipodomys_ordii
ENSSSCG00000013021	SF1	95	91.313	ENSETEG00000012830	SF1	82	91.453	Echinops_telfairi
ENSSSCG00000013021	SF1	100	99.453	ENSEASG00005018272	SF1	100	99.453	Equus_asinus_asinus
ENSSSCG00000013021	SF1	100	99.635	ENSECAG00000024544	SF1	100	99.635	Equus_caballus
ENSSSCG00000013021	SF1	72	99.491	ENSEEUG00000001058	SF1	100	99.491	Erinaceus_europaeus
ENSSSCG00000013021	SF1	67	81.432	ENSELUG00000013225	sf1	54	78.230	Esox_lucius
ENSSSCG00000013021	SF1	100	99.687	ENSFCAG00000012231	SF1	100	99.687	Felis_catus
ENSSSCG00000013021	SF1	94	96.512	ENSFDAG00000009833	SF1	99	91.693	Fukomys_damarensis
ENSSSCG00000013021	SF1	69	80.412	ENSFHEG00000022656	sf1	61	76.334	Fundulus_heteroclitus
ENSSSCG00000013021	SF1	60	87.941	ENSGMOG00000007469	sf1	62	87.941	Gadus_morhua
ENSSSCG00000013021	SF1	69	83.896	ENSGAFG00000019284	sf1	78	80.238	Gambusia_affinis
ENSSSCG00000013021	SF1	70	80.759	ENSGACG00000000826	sf1	68	76.722	Gasterosteus_aculeatus
ENSSSCG00000013021	SF1	83	89.011	ENSGAGG00000021691	SF1	72	85.907	Gopherus_agassizii
ENSSSCG00000013021	SF1	58	82.895	ENSHBUG00000011598	sf1	61	75.973	Haplochromis_burtoni
ENSSSCG00000013021	SF1	100	99.530	ENSHGLG00000009541	SF1	100	99.530	Heterocephalus_glaber_female
ENSSSCG00000013021	SF1	84	86.555	ENSHGLG00100008255	-	94	86.345	Heterocephalus_glaber_male
ENSSSCG00000013021	SF1	79	88.966	ENSHGLG00100008076	-	87	86.806	Heterocephalus_glaber_male
ENSSSCG00000013021	SF1	90	96.748	ENSHGLG00100013879	-	93	96.378	Heterocephalus_glaber_male
ENSSSCG00000013021	SF1	69	81.347	ENSHCOG00000011388	sf1	58	76.998	Hippocampus_comes
ENSSSCG00000013021	SF1	100	99.809	ENSSTOG00000009790	-	100	99.841	Ictidomys_tridecemlineatus
ENSSSCG00000013021	SF1	94	88.975	ENSSTOG00000024353	-	83	96.667	Ictidomys_tridecemlineatus
ENSSSCG00000013021	SF1	100	99.687	ENSJJAG00000011788	Sf1	100	99.687	Jaculus_jaculus
ENSSSCG00000013021	SF1	60	82.398	ENSKMAG00000005854	sf1	63	77.283	Kryptolebias_marmoratus
ENSSSCG00000013021	SF1	75	82.199	ENSLBEG00000019836	sf1	52	86.053	Labrus_bergylta
ENSSSCG00000013021	SF1	76	78.333	ENSLACG00000018493	SF1	74	78.554	Latimeria_chalumnae
ENSSSCG00000013021	SF1	68	84.881	ENSLOCG00000002130	sf1	59	80.049	Lepisosteus_oculatus
ENSSSCG00000013021	SF1	99	95.504	ENSLAFG00000007201	SF1	100	95.504	Loxodonta_africana
ENSSSCG00000013021	SF1	100	99.844	ENSMFAG00000033122	SF1	100	99.844	Macaca_fascicularis
ENSSSCG00000013021	SF1	100	99.818	ENSMMUG00000022606	SF1	100	99.841	Macaca_mulatta
ENSSSCG00000013021	SF1	100	99.844	ENSMNEG00000037901	SF1	100	99.844	Macaca_nemestrina
ENSSSCG00000013021	SF1	100	99.809	ENSMLEG00000040706	SF1	95	99.841	Mandrillus_leucophaeus
ENSSSCG00000013021	SF1	59	81.865	ENSMAMG00000001780	sf1	58	77.966	Mastacembelus_armatus
ENSSSCG00000013021	SF1	58	82.632	ENSMZEG00005009196	sf1	61	75.744	Maylandia_zebra
ENSSSCG00000013021	SF1	100	99.060	ENSMAUG00000014064	Sf1	100	99.060	Mesocricetus_auratus
ENSSSCG00000013021	SF1	100	99.687	ENSMICG00000001202	SF1	100	99.687	Microcebus_murinus
ENSSSCG00000013021	SF1	100	98.903	ENSMOCG00000022038	Sf1	100	98.903	Microtus_ochrogaster
ENSSSCG00000013021	SF1	67	82.258	ENSMMOG00000020474	sf1	60	76.399	Mola_mola
ENSSSCG00000013021	SF1	82	94.407	ENSMODG00000029407	SF1	97	94.407	Monodelphis_domestica
ENSSSCG00000013021	SF1	68	83.422	ENSMALG00000020521	sf1	68	76.596	Monopterus_albus
ENSSSCG00000013021	SF1	100	99.270	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSSSCG00000013021	SF1	100	99.270	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSSSCG00000013021	SF1	100	99.270	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSSSCG00000013021	SF1	100	99.270	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSSSCG00000013021	SF1	100	99.618	ENSMPUG00000012684	SF1	100	98.592	Mustela_putorius_furo
ENSSSCG00000013021	SF1	83	94.748	ENSMLUG00000029800	-	78	95.154	Myotis_lucifugus
ENSSSCG00000013021	SF1	100	99.809	ENSMLUG00000015217	-	99	99.842	Myotis_lucifugus
ENSSSCG00000013021	SF1	100	99.373	ENSNGAG00000005550	Sf1	100	99.373	Nannospalax_galili
ENSSSCG00000013021	SF1	68	83.690	ENSNBRG00000017606	sf1	60	79.562	Neolamprologus_brichardi
ENSSSCG00000013021	SF1	100	99.687	ENSNLEG00000005236	-	100	99.687	Nomascus_leucogenys
ENSSSCG00000013021	SF1	97	98.305	ENSMEUG00000013424	SF1	100	98.305	Notamacropus_eugenii
ENSSSCG00000013021	SF1	90	99.192	ENSOPRG00000005008	SF1	100	99.192	Ochotona_princeps
ENSSSCG00000013021	SF1	100	89.368	ENSODEG00000006102	-	100	87.519	Octodon_degus
ENSSSCG00000013021	SF1	58	82.895	ENSONIG00000015728	sf1	61	75.973	Oreochromis_niloticus
ENSSSCG00000013021	SF1	74	86.700	ENSOANG00000002909	SF1	96	87.724	Ornithorhynchus_anatinus
ENSSSCG00000013021	SF1	99	99.683	ENSOCUG00000026486	SF1	100	99.683	Oryctolagus_cuniculus
ENSSSCG00000013021	SF1	70	80.563	ENSORLG00000011853	sf1	58	77.458	Oryzias_latipes
ENSSSCG00000013021	SF1	71	79.250	ENSORLG00020011834	sf1	60	76.291	Oryzias_latipes_hni
ENSSSCG00000013021	SF1	68	80.105	ENSORLG00015012855	sf1	59	76.978	Oryzias_latipes_hsok
ENSSSCG00000013021	SF1	60	80.307	ENSOMEG00000005210	sf1	60	77.218	Oryzias_melastigma
ENSSSCG00000013021	SF1	100	99.530	ENSOGAG00000016196	SF1	100	99.530	Otolemur_garnettii
ENSSSCG00000013021	SF1	96	95.118	ENSOARG00000009166	SF1	97	95.118	Ovis_aries
ENSSSCG00000013021	SF1	100	99.809	ENSPPAG00000002799	-	100	99.837	Pan_paniscus
ENSSSCG00000013021	SF1	100	99.809	ENSPPRG00000013566	SF1	100	99.837	Panthera_pardus
ENSSSCG00000013021	SF1	82	98.210	ENSPTIG00000016141	SF1	80	98.652	Panthera_tigris_altaica
ENSSSCG00000013021	SF1	100	99.687	ENSPTRG00000003846	SF1	100	99.687	Pan_troglodytes
ENSSSCG00000013021	SF1	100	99.818	ENSPANG00000020754	SF1	100	99.818	Papio_anubis
ENSSSCG00000013021	SF1	60	79.880	ENSPKIG00000012116	sf1	88	74.499	Paramormyrops_kingsleyae
ENSSSCG00000013021	SF1	67	86.040	ENSPSIG00000003610	SF1	97	75.490	Pelodiscus_sinensis
ENSSSCG00000013021	SF1	100	99.060	ENSPEMG00000010463	Sf1	100	99.060	Peromyscus_maniculatus_bairdii
ENSSSCG00000013021	SF1	64	70.000	ENSPMAG00000008272	sf1	53	67.209	Petromyzon_marinus
ENSSSCG00000013021	SF1	100	98.748	ENSPCIG00000018173	SF1	100	98.748	Phascolarctos_cinereus
ENSSSCG00000013021	SF1	69	85.752	ENSPFOG00000013683	sf1	68	81.146	Poecilia_formosa
ENSSSCG00000013021	SF1	67	83.862	ENSPLAG00000018076	sf1	61	79.187	Poecilia_latipinna
ENSSSCG00000013021	SF1	67	83.862	ENSPMEG00000005726	sf1	62	79.426	Poecilia_mexicana
ENSSSCG00000013021	SF1	68	82.940	ENSPREG00000004155	sf1	59	78.708	Poecilia_reticulata
ENSSSCG00000013021	SF1	100	99.530	ENSPPYG00000003098	-	100	99.530	Pongo_abelii
ENSSSCG00000013021	SF1	98	99.257	ENSPCAG00000013631	SF1	80	99.257	Procavia_capensis
ENSSSCG00000013021	SF1	100	99.687	ENSPCOG00000027546	SF1	100	99.687	Propithecus_coquereli
ENSSSCG00000013021	SF1	98	99.628	ENSPVAG00000016938	SF1	81	99.628	Pteropus_vampyrus
ENSSSCG00000013021	SF1	58	82.632	ENSPNYG00000004673	sf1	59	76.869	Pundamilia_nyererei
ENSSSCG00000013021	SF1	68	85.185	ENSPNAG00000013072	sf1	59	78.606	Pygocentrus_nattereri
ENSSSCG00000013021	SF1	100	99.237	ENSRNOG00000021085	Sf1	100	99.218	Rattus_norvegicus
ENSSSCG00000013021	SF1	100	95.775	ENSRBIG00000042818	SF1	100	95.775	Rhinopithecus_bieti
ENSSSCG00000013021	SF1	95	99.808	ENSRROG00000045655	SF1	100	99.808	Rhinopithecus_roxellana
ENSSSCG00000013021	SF1	53	43.421	YLR116W	MSL5	61	43.182	Saccharomyces_cerevisiae
ENSSSCG00000013021	SF1	97	82.087	ENSSBOG00000022267	-	99	81.731	Saimiri_boliviensis_boliviensis
ENSSSCG00000013021	SF1	74	91.951	ENSSHAG00000006841	SF1	75	93.171	Sarcophilus_harrisii
ENSSSCG00000013021	SF1	72	80.750	ENSSFOG00015021978	sf1	55	77.053	Scleropages_formosus
ENSSSCG00000013021	SF1	75	76.112	ENSSMAG00000007549	sf1	63	76.526	Scophthalmus_maximus
ENSSSCG00000013021	SF1	59	80.720	ENSSDUG00000003903	sf1	63	76.402	Seriola_dumerili
ENSSSCG00000013021	SF1	59	80.206	ENSSLDG00000013075	sf1	61	76.402	Seriola_lalandi_dorsalis
ENSSSCG00000013021	SF1	94	95.551	ENSSARG00000008180	SF1	100	95.551	Sorex_araneus
ENSSSCG00000013021	SF1	80	85.403	ENSSPUG00000012907	SF1	86	81.382	Sphenodon_punctatus
ENSSSCG00000013021	SF1	69	80.412	ENSSPAG00000019060	sf1	61	75.878	Stegastes_partitus
ENSSSCG00000013021	SF1	97	61.878	ENSTNIG00000004820	sf1	80	69.789	Tetraodon_nigroviridis
ENSSSCG00000013021	SF1	96	84.641	ENSTBEG00000013133	SF1	79	100.000	Tupaia_belangeri
ENSSSCG00000013021	SF1	98	95.531	ENSTTRG00000008857	SF1	100	95.531	Tursiops_truncatus
ENSSSCG00000013021	SF1	100	96.947	ENSUAMG00000011977	SF1	100	96.947	Ursus_americanus
ENSSSCG00000013021	SF1	84	99.783	ENSUMAG00000007268	SF1	89	100.000	Ursus_maritimus
ENSSSCG00000013021	SF1	65	100.000	ENSVPAG00000011912	SF1	66	100.000	Vicugna_pacos
ENSSSCG00000013021	SF1	100	99.818	ENSVVUG00000028585	SF1	100	99.818	Vulpes_vulpes
ENSSSCG00000013021	SF1	97	69.545	ENSXETG00000008434	sf1	68	81.553	Xenopus_tropicalis
ENSSSCG00000013021	SF1	67	85.205	ENSXCOG00000003704	sf1	75	80.941	Xiphophorus_couchianus
ENSSSCG00000013021	SF1	68	83.377	ENSXMAG00000007822	sf1	61	79.426	Xiphophorus_maculatus