EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000013463 (Gene tree)
Gene ID: -
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 4763 bases
Position: chr2:76246933-76251695
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000014311	LSM	PF01423.22	5.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000014708	LSM7-201	309	-	ENSSSCP00000014311	102 (aa)	-	F1S8H0

Gene Model

Click here to download ENSSSCG00000013463's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000013463's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000013463	LSM7	70	36.620	ENSSSCG00000024776	-	83	36.620
ENSSSCG00000013463	LSM7	73	35.526	ENSSSCG00000021652	LSM8	73	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000013463	LSM7	99	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSSSCG00000013463	LSM7	92	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSSSCG00000013463	LSM7	99	99.010	ENSAMEG00000005484	LSM7	98	99.010	Ailuropoda_melanoleuca
ENSSSCG00000013463	LSM7	95	94.845	ENSACIG00000006498	lsm7	77	94.845	Amphilophus_citrinellus
ENSSSCG00000013463	LSM7	99	95.050	ENSAOCG00000001077	lsm7	92	95.050	Amphiprion_ocellaris
ENSSSCG00000013463	LSM7	99	95.050	ENSAPEG00000024447	lsm7	92	95.050	Amphiprion_percula
ENSSSCG00000013463	LSM7	99	95.050	ENSAPEG00000000694	lsm7	98	95.050	Amphiprion_percula
ENSSSCG00000013463	LSM7	99	95.050	ENSATEG00000008557	lsm7	98	95.050	Anabas_testudineus
ENSSSCG00000013463	LSM7	99	91.089	ENSANAG00000022222	-	98	91.089	Aotus_nancymaae
ENSSSCG00000013463	LSM7	99	100.000	ENSANAG00000037196	-	98	100.000	Aotus_nancymaae
ENSSSCG00000013463	LSM7	99	94.059	ENSACLG00000021021	lsm7	98	94.059	Astatotilapia_calliptera
ENSSSCG00000013463	LSM7	99	95.050	ENSAMXG00000037622	lsm7	98	95.050	Astyanax_mexicanus
ENSSSCG00000013463	LSM7	99	100.000	ENSBTAG00000004521	LSM7	98	100.000	Bos_taurus
ENSSSCG00000013463	LSM7	98	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSSSCG00000013463	LSM7	53	100.000	ENSCJAG00000039713	-	66	100.000	Callithrix_jacchus
ENSSSCG00000013463	LSM7	99	99.010	ENSCAFG00000019409	LSM7	98	99.010	Canis_familiaris
ENSSSCG00000013463	LSM7	99	99.010	ENSCAFG00020018168	LSM7	74	99.010	Canis_lupus_dingo
ENSSSCG00000013463	LSM7	99	100.000	ENSCHIG00000023663	LSM7	98	100.000	Capra_hircus
ENSSSCG00000013463	LSM7	70	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSSSCG00000013463	LSM7	99	100.000	ENSCPOG00000014025	LSM7	100	100.000	Cavia_porcellus
ENSSSCG00000013463	LSM7	100	100.000	ENSCCAG00000035456	LSM7	100	100.000	Cebus_capucinus
ENSSSCG00000013463	LSM7	99	100.000	ENSCATG00000023543	LSM7	98	100.000	Cercocebus_atys
ENSSSCG00000013463	LSM7	99	100.000	ENSCLAG00000011635	LSM7	98	100.000	Chinchilla_lanigera
ENSSSCG00000013463	LSM7	99	100.000	ENSCSAG00000011599	LSM7	98	100.000	Chlorocebus_sabaeus
ENSSSCG00000013463	LSM7	71	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSSSCG00000013463	LSM7	94	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSSSCG00000013463	LSM7	99	100.000	ENSCANG00000035525	LSM7	98	100.000	Colobus_angolensis_palliatus
ENSSSCG00000013463	LSM7	89	89.011	ENSCGRG00001016005	-	93	89.011	Cricetulus_griseus_chok1gshd
ENSSSCG00000013463	LSM7	99	99.010	ENSCGRG00001000807	-	98	99.010	Cricetulus_griseus_chok1gshd
ENSSSCG00000013463	LSM7	99	99.010	ENSCGRG00000014355	-	97	99.010	Cricetulus_griseus_crigri
ENSSSCG00000013463	LSM7	89	89.011	ENSCGRG00000006821	-	93	89.011	Cricetulus_griseus_crigri
ENSSSCG00000013463	LSM7	100	95.098	ENSCSEG00000014900	lsm7	86	95.098	Cynoglossus_semilaevis
ENSSSCG00000013463	LSM7	99	96.040	ENSCVAG00000021091	lsm7	94	96.040	Cyprinodon_variegatus
ENSSSCG00000013463	LSM7	99	95.050	ENSDARG00000058328	lsm7	98	95.050	Danio_rerio
ENSSSCG00000013463	LSM7	100	98.039	ENSDORG00000024460	Lsm7	100	98.039	Dipodomys_ordii
ENSSSCG00000013463	LSM7	95	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSSSCG00000013463	LSM7	99	97.030	ENSETEG00000012788	LSM7	99	97.030	Echinops_telfairi
ENSSSCG00000013463	LSM7	99	85.149	ENSEBUG00000016992	lsm7	97	85.149	Eptatretus_burgeri
ENSSSCG00000013463	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSSSCG00000013463	LSM7	99	96.040	ENSECAG00000001440	LSM7	65	96.040	Equus_caballus
ENSSSCG00000013463	LSM7	99	99.010	ENSFCAG00000003445	LSM7	98	99.010	Felis_catus
ENSSSCG00000013463	LSM7	99	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSSSCG00000013463	LSM7	94	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSSSCG00000013463	LSM7	99	96.040	ENSFHEG00000006349	lsm7	90	96.040	Fundulus_heteroclitus
ENSSSCG00000013463	LSM7	99	93.069	ENSGMOG00000013320	lsm7	98	93.069	Gadus_morhua
ENSSSCG00000013463	LSM7	99	96.040	ENSGAFG00000013902	lsm7	98	96.040	Gambusia_affinis
ENSSSCG00000013463	LSM7	99	94.059	ENSGACG00000010390	lsm7	98	94.059	Gasterosteus_aculeatus
ENSSSCG00000013463	LSM7	99	100.000	ENSGGOG00000010172	LSM7	98	100.000	Gorilla_gorilla
ENSSSCG00000013463	LSM7	99	94.059	ENSHBUG00000004616	lsm7	98	94.059	Haplochromis_burtoni
ENSSSCG00000013463	LSM7	99	100.000	ENSHGLG00000010587	LSM7	98	100.000	Heterocephalus_glaber_female
ENSSSCG00000013463	LSM7	99	100.000	ENSHGLG00100000852	LSM7	98	100.000	Heterocephalus_glaber_male
ENSSSCG00000013463	LSM7	99	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSSSCG00000013463	LSM7	99	95.050	ENSIPUG00000024724	lsm7	98	95.050	Ictalurus_punctatus
ENSSSCG00000013463	LSM7	100	99.020	ENSSTOG00000028372	LSM7	100	99.020	Ictidomys_tridecemlineatus
ENSSSCG00000013463	LSM7	99	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSSSCG00000013463	LSM7	99	96.040	ENSKMAG00000022151	lsm7	98	96.040	Kryptolebias_marmoratus
ENSSSCG00000013463	LSM7	99	95.050	ENSLBEG00000005203	lsm7	98	95.050	Labrus_bergylta
ENSSSCG00000013463	LSM7	99	99.010	ENSLACG00000015700	LSM7	98	99.010	Latimeria_chalumnae
ENSSSCG00000013463	LSM7	99	98.020	ENSLOCG00000004356	lsm7	98	98.020	Lepisosteus_oculatus
ENSSSCG00000013463	LSM7	99	100.000	ENSLAFG00000029302	LSM7	98	100.000	Loxodonta_africana
ENSSSCG00000013463	LSM7	99	100.000	ENSMFAG00000044572	LSM7	98	100.000	Macaca_fascicularis
ENSSSCG00000013463	LSM7	100	99.020	ENSMMUG00000000452	LSM7	100	99.020	Macaca_mulatta
ENSSSCG00000013463	LSM7	99	100.000	ENSMNEG00000004393	LSM7	98	100.000	Macaca_nemestrina
ENSSSCG00000013463	LSM7	99	100.000	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000013463	LSM7	99	94.059	ENSMAMG00000005410	lsm7	98	94.059	Mastacembelus_armatus
ENSSSCG00000013463	LSM7	99	94.059	ENSMZEG00005028055	lsm7	98	94.059	Maylandia_zebra
ENSSSCG00000013463	LSM7	99	98.020	ENSMGAG00000000750	LSM7	87	98.020	Meleagris_gallopavo
ENSSSCG00000013463	LSM7	99	99.010	ENSMAUG00000009276	Lsm7	98	99.010	Mesocricetus_auratus
ENSSSCG00000013463	LSM7	99	100.000	ENSMICG00000009988	-	98	100.000	Microcebus_murinus
ENSSSCG00000013463	LSM7	99	100.000	ENSMICG00000028619	-	98	100.000	Microcebus_murinus
ENSSSCG00000013463	LSM7	99	99.010	ENSMOCG00000016925	Lsm7	98	99.010	Microtus_ochrogaster
ENSSSCG00000013463	LSM7	99	95.050	ENSMMOG00000019645	lsm7	96	95.050	Mola_mola
ENSSSCG00000013463	LSM7	99	99.010	ENSMODG00000004722	LSM7	98	99.010	Monodelphis_domestica
ENSSSCG00000013463	LSM7	99	94.059	ENSMALG00000014511	lsm7	78	94.059	Monopterus_albus
ENSSSCG00000013463	LSM7	99	97.030	MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	Mus_caroli
ENSSSCG00000013463	LSM7	99	97.030	ENSMUSG00000035215	Lsm7	98	97.030	Mus_musculus
ENSSSCG00000013463	LSM7	99	97.030	MGP_PahariEiJ_G0031020	Lsm7	98	97.030	Mus_pahari
ENSSSCG00000013463	LSM7	99	97.030	MGP_SPRETEiJ_G0016425	Lsm7	98	97.030	Mus_spretus
ENSSSCG00000013463	LSM7	100	89.216	ENSMLUG00000024002	-	94	89.216	Myotis_lucifugus
ENSSSCG00000013463	LSM7	99	99.010	ENSMLUG00000013097	-	98	99.010	Myotis_lucifugus
ENSSSCG00000013463	LSM7	99	98.020	ENSNGAG00000021637	Lsm7	98	98.020	Nannospalax_galili
ENSSSCG00000013463	LSM7	99	94.059	ENSNBRG00000015770	lsm7	87	94.059	Neolamprologus_brichardi
ENSSSCG00000013463	LSM7	92	94.681	ENSNBRG00000001237	-	82	93.137	Neolamprologus_brichardi
ENSSSCG00000013463	LSM7	99	100.000	ENSNLEG00000002265	LSM7	98	100.000	Nomascus_leucogenys
ENSSSCG00000013463	LSM7	99	100.000	ENSODEG00000013590	-	98	100.000	Octodon_degus
ENSSSCG00000013463	LSM7	99	79.208	ENSODEG00000008190	-	98	79.208	Octodon_degus
ENSSSCG00000013463	LSM7	99	93.069	ENSODEG00000018769	-	98	93.069	Octodon_degus
ENSSSCG00000013463	LSM7	99	94.059	ENSONIG00000001801	lsm7	87	94.059	Oreochromis_niloticus
ENSSSCG00000013463	LSM7	99	95.050	ENSORLG00000023951	lsm7	98	95.050	Oryzias_latipes
ENSSSCG00000013463	LSM7	99	95.050	ENSORLG00020022226	lsm7	98	95.050	Oryzias_latipes_hni
ENSSSCG00000013463	LSM7	99	95.050	ENSORLG00015020044	lsm7	94	95.050	Oryzias_latipes_hsok
ENSSSCG00000013463	LSM7	99	95.050	ENSOMEG00000012806	lsm7	98	95.050	Oryzias_melastigma
ENSSSCG00000013463	LSM7	99	98.020	ENSOGAG00000000144	-	99	98.020	Otolemur_garnettii
ENSSSCG00000013463	LSM7	100	85.294	ENSOGAG00000024373	-	100	85.294	Otolemur_garnettii
ENSSSCG00000013463	LSM7	99	100.000	ENSOARG00000014013	LSM7	98	100.000	Ovis_aries
ENSSSCG00000013463	LSM7	99	100.000	ENSPPAG00000026500	LSM7	98	100.000	Pan_paniscus
ENSSSCG00000013463	LSM7	99	99.010	ENSPPRG00000008624	LSM7	98	99.010	Panthera_pardus
ENSSSCG00000013463	LSM7	99	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSSSCG00000013463	LSM7	99	100.000	ENSPTRG00000010233	LSM7	98	100.000	Pan_troglodytes
ENSSSCG00000013463	LSM7	99	100.000	ENSPANG00000020668	LSM7	98	100.000	Papio_anubis
ENSSSCG00000013463	LSM7	99	97.030	ENSPKIG00000011325	lsm7	98	97.030	Paramormyrops_kingsleyae
ENSSSCG00000013463	LSM7	99	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSSSCG00000013463	LSM7	99	95.050	ENSPMGG00000006498	lsm7	98	95.050	Periophthalmus_magnuspinnatus
ENSSSCG00000013463	LSM7	100	99.020	ENSPCIG00000030454	LSM7	100	99.020	Phascolarctos_cinereus
ENSSSCG00000013463	LSM7	99	95.050	ENSPFOG00000012467	lsm7	89	95.050	Poecilia_formosa
ENSSSCG00000013463	LSM7	99	95.050	ENSPLAG00000000252	lsm7	94	95.050	Poecilia_latipinna
ENSSSCG00000013463	LSM7	100	94.118	ENSPMEG00000000587	lsm7	94	95.050	Poecilia_mexicana
ENSSSCG00000013463	LSM7	76	75.949	ENSPREG00000016718	lsm7	63	75.949	Poecilia_reticulata
ENSSSCG00000013463	LSM7	72	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSSSCG00000013463	LSM7	100	100.000	ENSPCOG00000017177	LSM7	100	100.000	Propithecus_coquereli
ENSSSCG00000013463	LSM7	99	94.059	ENSPNYG00000006938	lsm7	98	94.059	Pundamilia_nyererei
ENSSSCG00000013463	LSM7	100	94.118	ENSPNAG00000010141	lsm7	100	94.118	Pygocentrus_nattereri
ENSSSCG00000013463	LSM7	99	98.020	ENSRNOG00000019552	Lsm7	98	98.020	Rattus_norvegicus
ENSSSCG00000013463	LSM7	99	100.000	ENSRBIG00000035978	LSM7	98	100.000	Rhinopithecus_bieti
ENSSSCG00000013463	LSM7	99	100.000	ENSRROG00000034044	LSM7	98	100.000	Rhinopithecus_roxellana
ENSSSCG00000013463	LSM7	87	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSSSCG00000013463	LSM7	99	100.000	ENSSBOG00000034899	LSM7	98	100.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000013463	LSM7	99	95.050	ENSSFOG00015006728	lsm7	98	95.050	Scleropages_formosus
ENSSSCG00000013463	LSM7	99	95.050	ENSSMAG00000004195	lsm7	93	95.050	Scophthalmus_maximus
ENSSSCG00000013463	LSM7	99	95.050	ENSSDUG00000001863	lsm7	98	95.050	Seriola_dumerili
ENSSSCG00000013463	LSM7	99	95.050	ENSSLDG00000016339	lsm7	98	95.050	Seriola_lalandi_dorsalis
ENSSSCG00000013463	LSM7	99	95.050	ENSSPAG00000015221	lsm7	98	95.050	Stegastes_partitus
ENSSSCG00000013463	LSM7	99	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSSSCG00000013463	LSM7	99	95.050	ENSTRUG00000022913	lsm7	98	95.050	Takifugu_rubripes
ENSSSCG00000013463	LSM7	99	95.050	ENSTNIG00000015525	lsm7	98	95.050	Tetraodon_nigroviridis
ENSSSCG00000013463	LSM7	69	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSSSCG00000013463	LSM7	99	99.010	ENSUAMG00000000912	LSM7	84	99.010	Ursus_americanus
ENSSSCG00000013463	LSM7	99	99.010	ENSUMAG00000006556	LSM7	79	99.010	Ursus_maritimus
ENSSSCG00000013463	LSM7	70	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSSSCG00000013463	LSM7	99	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSSSCG00000013463	LSM7	99	96.040	ENSXCOG00000002572	lsm7	99	96.040	Xiphophorus_couchianus
ENSSSCG00000013463	LSM7	99	96.040	ENSXMAG00000018630	lsm7	98	96.040	Xiphophorus_maculatus