EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000013522 (Gene tree)
Gene ID: 100620815
Gene Symbol: SAFB
Alias: HET|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 34313 bases
Position: chr2:73300638-73334950
Accession: 100620815
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000032551	RRM_5	PF13893.6	4.1e-07	1	1
ENSSSCP00000014369	RRM_5	PF13893.6	5.8e-07	1	1
ENSSSCP00000032551	RRM_1	PF00076.22	4e-13	1	1
ENSSSCP00000014369	RRM_1	PF00076.22	5.7e-13	1	1
ENSSSCP00000032551	SAP	PF02037.27	1.1e-10	1	1
ENSSSCP00000014369	SAP	PF02037.27	1.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000042991	SAFB-202	5871	-	ENSSSCP00000032551	783 (aa)	-	A0A286ZLW6
ENSSSCT00000014769	SAFB-201	3691	XM_021084023	ENSSSCP00000014369	985 (aa)	XP_020939682	F1S7J6

Gene Model

Click here to download ENSSSCG00000013522's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000013522's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000013522	SAFB	99	68.337	ENSSSCG00000013523	SAFB2	98	68.065

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000013522	SAFB	99	93.702	ENSG00000160633	SAFB	100	92.465	Homo_sapiens
ENSSSCG00000013522	SAFB	96	45.250	ENSAPOG00000022508	safb	64	43.699	Acanthochromis_polyacanthus
ENSSSCG00000013522	SAFB	99	94.872	ENSAMEG00000012254	SAFB	100	94.092	Ailuropoda_melanoleuca
ENSSSCG00000013522	SAFB	96	42.243	ENSACIG00000006247	safb	99	38.970	Amphilophus_citrinellus
ENSSSCG00000013522	SAFB	96	44.689	ENSAOCG00000006308	safb	86	42.894	Amphiprion_ocellaris
ENSSSCG00000013522	SAFB	96	44.583	ENSAPEG00000023342	safb	64	43.137	Amphiprion_percula
ENSSSCG00000013522	SAFB	96	43.257	ENSATEG00000004998	safb	64	42.929	Anabas_testudineus
ENSSSCG00000013522	SAFB	91	63.014	ENSAPLG00000006355	-	99	63.647	Anas_platyrhynchos
ENSSSCG00000013522	SAFB	92	66.713	ENSAPLG00000005780	-	100	63.440	Anas_platyrhynchos
ENSSSCG00000013522	SAFB	53	60.235	ENSACAG00000016893	-	74	49.303	Anolis_carolinensis
ENSSSCG00000013522	SAFB	99	93.445	ENSANAG00000028821	SAFB	100	92.250	Aotus_nancymaae
ENSSSCG00000013522	SAFB	96	42.656	ENSACLG00000001926	safb	62	42.061	Astatotilapia_calliptera
ENSSSCG00000013522	SAFB	98	45.833	ENSAMXG00000018154	safb	94	44.235	Astyanax_mexicanus
ENSSSCG00000013522	SAFB	99	92.931	ENSBTAG00000007875	SAFB	100	90.312	Bos_taurus
ENSSSCG00000013522	SAFB	79	95.283	ENSCJAG00000017081	SAFB	100	94.052	Callithrix_jacchus
ENSSSCG00000013522	SAFB	99	96.272	ENSCAFG00000018803	SAFB	90	95.303	Canis_familiaris
ENSSSCG00000013522	SAFB	99	96.272	ENSCAFG00020018943	SAFB	100	95.577	Canis_lupus_dingo
ENSSSCG00000013522	SAFB	99	91.517	ENSCHIG00000007262	SAFB	98	91.509	Capra_hircus
ENSSSCG00000013522	SAFB	54	78.424	ENSTSYG00000001851	-	100	70.620	Carlito_syrichta
ENSSSCG00000013522	SAFB	87	70.999	ENSCAPG00000012121	SAFB	77	82.702	Cavia_aperea
ENSSSCG00000013522	SAFB	99	87.157	ENSCPOG00000026322	SAFB	100	86.254	Cavia_porcellus
ENSSSCG00000013522	SAFB	99	93.838	ENSCCAG00000020193	SAFB	100	92.473	Cebus_capucinus
ENSSSCG00000013522	SAFB	99	93.959	ENSCATG00000029994	SAFB	100	92.788	Cercocebus_atys
ENSSSCG00000013522	SAFB	99	87.955	ENSCLAG00000007734	SAFB	100	88.397	Chinchilla_lanigera
ENSSSCG00000013522	SAFB	99	93.830	ENSCSAG00000009949	SAFB	100	92.680	Chlorocebus_sabaeus
ENSSSCG00000013522	SAFB	82	95.238	ENSCHOG00000003208	SAFB	93	95.238	Choloepus_hoffmanni
ENSSSCG00000013522	SAFB	89	61.962	ENSCPBG00000010936	-	99	60.491	Chrysemys_picta_bellii
ENSSSCG00000013522	SAFB	89	65.621	ENSCPBG00000010928	-	99	63.158	Chrysemys_picta_bellii
ENSSSCG00000013522	SAFB	99	87.789	ENSCANG00000019754	-	100	86.947	Colobus_angolensis_palliatus
ENSSSCG00000013522	SAFB	99	98.361	ENSCANG00000004774	-	99	95.025	Colobus_angolensis_palliatus
ENSSSCG00000013522	SAFB	99	82.728	ENSCGRG00001002254	Safb	100	83.122	Cricetulus_griseus_chok1gshd
ENSSSCG00000013522	SAFB	88	79.536	ENSCGRG00000011529	Safb	96	80.317	Cricetulus_griseus_crigri
ENSSSCG00000013522	SAFB	96	41.480	ENSCSEG00000019870	safb	98	38.497	Cynoglossus_semilaevis
ENSSSCG00000013522	SAFB	93	42.140	ENSCVAG00000002226	safb	64	40.268	Cyprinodon_variegatus
ENSSSCG00000013522	SAFB	97	42.750	ENSDARG00000020467	safb	95	44.676	Danio_rerio
ENSSSCG00000013522	SAFB	99	94.095	ENSDNOG00000015746	SAFB	95	93.598	Dasypus_novemcinctus
ENSSSCG00000013522	SAFB	99	82.170	ENSDORG00000016200	Safb	100	82.513	Dipodomys_ordii
ENSSSCG00000013522	SAFB	75	86.957	ENSETEG00000018679	SAFB	76	86.957	Echinops_telfairi
ENSSSCG00000013522	SAFB	99	90.153	ENSEASG00005023019	SAFB	100	90.011	Equus_asinus_asinus
ENSSSCG00000013522	SAFB	99	91.902	ENSECAG00000018659	SAFB	92	90.928	Equus_caballus
ENSSSCG00000013522	SAFB	98	43.650	ENSELUG00000022327	safb	98	44.009	Esox_lucius
ENSSSCG00000013522	SAFB	99	95.758	ENSFCAG00000011835	SAFB	100	94.726	Felis_catus
ENSSSCG00000013522	SAFB	89	60.729	ENSFALG00000013881	-	99	60.690	Ficedula_albicollis
ENSSSCG00000013522	SAFB	99	66.158	ENSFALG00000013882	-	92	63.326	Ficedula_albicollis
ENSSSCG00000013522	SAFB	99	96.721	ENSFDAG00000020306	SAFB	99	86.977	Fukomys_damarensis
ENSSSCG00000013522	SAFB	69	57.265	ENSFHEG00000004219	safb	78	55.906	Fundulus_heteroclitus
ENSSSCG00000013522	SAFB	51	51.064	ENSGMOG00000014280	safb	95	40.471	Gadus_morhua
ENSSSCG00000013522	SAFB	99	60.775	ENSGALG00000001948	-	100	62.048	Gallus_gallus
ENSSSCG00000013522	SAFB	99	66.115	ENSGALG00000013365	-	100	63.394	Gallus_gallus
ENSSSCG00000013522	SAFB	94	37.909	ENSGAFG00000016162	safb	95	40.761	Gambusia_affinis
ENSSSCG00000013522	SAFB	96	44.374	ENSGACG00000011385	safb	64	42.574	Gasterosteus_aculeatus
ENSSSCG00000013522	SAFB	99	62.485	ENSGAGG00000008424	-	97	62.361	Gopherus_agassizii
ENSSSCG00000013522	SAFB	67	61.321	ENSGAGG00000017702	-	100	58.702	Gopherus_agassizii
ENSSSCG00000013522	SAFB	99	93.445	ENSGGOG00000015109	SAFB	100	92.250	Gorilla_gorilla
ENSSSCG00000013522	SAFB	93	41.351	ENSHBUG00000009218	safb	94	39.175	Haplochromis_burtoni
ENSSSCG00000013522	SAFB	99	90.302	ENSHGLG00000015883	SAFB	100	89.714	Heterocephalus_glaber_female
ENSSSCG00000013522	SAFB	95	75.696	ENSHGLG00100004228	SAFB	77	89.247	Heterocephalus_glaber_male
ENSSSCG00000013522	SAFB	89	38.643	ENSHCOG00000001705	safb	97	39.286	Hippocampus_comes
ENSSSCG00000013522	SAFB	52	47.330	ENSIPUG00000024869	safb2	98	44.763	Ictalurus_punctatus
ENSSSCG00000013522	SAFB	91	91.096	ENSSTOG00000002783	SAFB	100	90.899	Ictidomys_tridecemlineatus
ENSSSCG00000013522	SAFB	99	84.519	ENSJJAG00000009021	Safb	100	83.613	Jaculus_jaculus
ENSSSCG00000013522	SAFB	96	44.444	ENSKMAG00000022308	safb	57	48.976	Kryptolebias_marmoratus
ENSSSCG00000013522	SAFB	96	43.939	ENSLBEG00000006015	safb	63	44.741	Labrus_bergylta
ENSSSCG00000013522	SAFB	75	53.257	ENSLACG00000018090	SAFB	100	52.648	Latimeria_chalumnae
ENSSSCG00000013522	SAFB	98	47.500	ENSLOCG00000003613	safb	99	47.140	Lepisosteus_oculatus
ENSSSCG00000013522	SAFB	99	90.978	ENSLAFG00000003840	SAFB	100	88.280	Loxodonta_africana
ENSSSCG00000013522	SAFB	99	93.838	ENSMFAG00000003885	SAFB	100	92.473	Macaca_fascicularis
ENSSSCG00000013522	SAFB	99	93.959	ENSMMUG00000017970	SAFB	100	92.788	Macaca_mulatta
ENSSSCG00000013522	SAFB	99	89.730	ENSMNEG00000035637	SAFB	100	89.032	Macaca_nemestrina
ENSSSCG00000013522	SAFB	99	87.340	ENSMLEG00000038637	SAFB	100	87.245	Mandrillus_leucophaeus
ENSSSCG00000013522	SAFB	96	42.586	ENSMAMG00000003357	safb	59	42.339	Mastacembelus_armatus
ENSSSCG00000013522	SAFB	96	42.857	ENSMZEG00005009120	safb	65	43.657	Maylandia_zebra
ENSSSCG00000013522	SAFB	96	64.409	ENSMGAG00000001101	-	100	62.514	Meleagris_gallopavo
ENSSSCG00000013522	SAFB	99	58.994	ENSMGAG00000001051	-	100	59.386	Meleagris_gallopavo
ENSSSCG00000013522	SAFB	100	79.262	ENSMICG00000046795	-	98	90.426	Microcebus_murinus
ENSSSCG00000013522	SAFB	99	89.859	ENSMICG00000008739	-	100	88.065	Microcebus_murinus
ENSSSCG00000013522	SAFB	99	82.854	ENSMOCG00000014040	Safb	100	83.053	Microtus_ochrogaster
ENSSSCG00000013522	SAFB	99	75.784	ENSMODG00000001236	SAFB	100	74.763	Monodelphis_domestica
ENSSSCG00000013522	SAFB	96	41.544	ENSMALG00000020330	safb	98	42.584	Monopterus_albus
ENSSSCG00000013522	SAFB	99	83.250	MGP_CAROLIEiJ_G0021780	Safb	100	83.562	Mus_caroli
ENSSSCG00000013522	SAFB	99	83.375	ENSMUSG00000071054	Safb	100	83.667	Mus_musculus
ENSSSCG00000013522	SAFB	99	82.896	MGP_PahariEiJ_G0020769	Safb	100	83.263	Mus_pahari
ENSSSCG00000013522	SAFB	99	95.373	ENSMPUG00000006123	SAFB	97	94.271	Mustela_putorius_furo
ENSSSCG00000013522	SAFB	99	93.959	ENSMLUG00000001081	SAFB	100	92.465	Myotis_lucifugus
ENSSSCG00000013522	SAFB	99	80.923	ENSNGAG00000019882	Safb	100	80.483	Nannospalax_galili
ENSSSCG00000013522	SAFB	99	93.702	ENSNLEG00000013551	SAFB	100	92.368	Nomascus_leucogenys
ENSSSCG00000013522	SAFB	91	83.287	ENSOPRG00000011561	-	100	82.524	Ochotona_princeps
ENSSSCG00000013522	SAFB	99	90.464	ENSODEG00000014838	SAFB	100	89.768	Octodon_degus
ENSSSCG00000013522	SAFB	96	42.929	ENSONIG00000002318	safb	64	43.573	Oreochromis_niloticus
ENSSSCG00000013522	SAFB	88	78.841	ENSOCUG00000014628	SAFB	63	85.714	Oryctolagus_cuniculus
ENSSSCG00000013522	SAFB	96	41.974	ENSORLG00020000404	safb	57	44.190	Oryzias_latipes_hni
ENSSSCG00000013522	SAFB	99	88.889	ENSOGAG00000027769	SAFB	100	86.081	Otolemur_garnettii
ENSSSCG00000013522	SAFB	99	88.303	ENSOARG00000007662	-	100	84.392	Ovis_aries
ENSSSCG00000013522	SAFB	91	85.175	ENSOARG00000007856	-	100	84.895	Ovis_aries
ENSSSCG00000013522	SAFB	99	93.453	ENSPPAG00000035129	SAFB	100	92.043	Pan_paniscus
ENSSSCG00000013522	SAFB	99	95.758	ENSPPRG00000017197	SAFB	100	94.726	Panthera_pardus
ENSSSCG00000013522	SAFB	99	93.453	ENSPTRG00000010335	SAFB	100	92.043	Pan_troglodytes
ENSSSCG00000013522	SAFB	99	93.710	ENSPANG00000007770	SAFB	100	92.366	Papio_anubis
ENSSSCG00000013522	SAFB	99	42.944	ENSPKIG00000009902	safb	95	44.194	Paramormyrops_kingsleyae
ENSSSCG00000013522	SAFB	99	62.176	ENSPSIG00000011679	-	100	63.920	Pelodiscus_sinensis
ENSSSCG00000013522	SAFB	99	62.423	ENSPSIG00000009367	-	97	60.493	Pelodiscus_sinensis
ENSSSCG00000013522	SAFB	99	83.563	ENSPEMG00000020428	Safb	100	83.650	Peromyscus_maniculatus_bairdii
ENSSSCG00000013522	SAFB	54	80.776	ENSPCIG00000009504	-	100	80.961	Phascolarctos_cinereus
ENSSSCG00000013522	SAFB	93	41.645	ENSPFOG00000007745	safb	99	38.785	Poecilia_formosa
ENSSSCG00000013522	SAFB	94	38.060	ENSPLAG00000001614	safb	66	39.044	Poecilia_latipinna
ENSSSCG00000013522	SAFB	94	39.844	ENSPMEG00000021023	safb	67	39.833	Poecilia_mexicana
ENSSSCG00000013522	SAFB	88	37.680	ENSPREG00000012496	safb	65	38.206	Poecilia_reticulata
ENSSSCG00000013522	SAFB	99	93.830	ENSPPYG00000009428	SAFB	100	92.880	Pongo_abelii
ENSSSCG00000013522	SAFB	99	86.718	ENSPCAG00000006475	SAFB	100	86.373	Procavia_capensis
ENSSSCG00000013522	SAFB	99	84.783	ENSPCOG00000014090	SAFB	100	84.137	Propithecus_coquereli
ENSSSCG00000013522	SAFB	99	89.730	ENSPVAG00000004913	SAFB	100	85.884	Pteropus_vampyrus
ENSSSCG00000013522	SAFB	52	49.910	ENSPNAG00000021838	safb	97	45.204	Pygocentrus_nattereri
ENSSSCG00000013522	SAFB	99	82.814	ENSRNOG00000050543	Safb	100	83.718	Rattus_norvegicus
ENSSSCG00000013522	SAFB	99	81.900	ENSRBIG00000042509	SAFB	88	94.624	Rhinopithecus_bieti
ENSSSCG00000013522	SAFB	99	93.967	ENSRROG00000029278	SAFB	100	92.473	Rhinopithecus_roxellana
ENSSSCG00000013522	SAFB	99	93.959	ENSSBOG00000026291	SAFB	100	92.788	Saimiri_boliviensis_boliviensis
ENSSSCG00000013522	SAFB	96	44.763	ENSSFOG00015008156	safb	95	46.456	Scleropages_formosus
ENSSSCG00000013522	SAFB	96	42.462	ENSSMAG00000009316	safb	64	43.140	Scophthalmus_maximus
ENSSSCG00000013522	SAFB	96	41.635	ENSSDUG00000009652	safb	97	40.247	Seriola_dumerili
ENSSSCG00000013522	SAFB	96	44.403	ENSSLDG00000001670	safb	64	41.667	Seriola_lalandi_dorsalis
ENSSSCG00000013522	SAFB	89	88.177	ENSSARG00000010475	SAFB	100	86.143	Sorex_araneus
ENSSSCG00000013522	SAFB	62	57.558	ENSSPUG00000009820	-	99	62.116	Sphenodon_punctatus
ENSSSCG00000013522	SAFB	67	58.333	ENSSPUG00000009747	-	99	57.734	Sphenodon_punctatus
ENSSSCG00000013522	SAFB	96	42.293	ENSSPAG00000015682	safb	97	37.738	Stegastes_partitus
ENSSSCG00000013522	SAFB	99	64.923	ENSTGUG00000000502	-	97	64.196	Taeniopygia_guttata
ENSSSCG00000013522	SAFB	99	62.469	ENSTGUG00000000489	-	100	63.483	Taeniopygia_guttata
ENSSSCG00000013522	SAFB	98	41.045	ENSTRUG00000003567	safb	95	42.182	Takifugu_rubripes
ENSSSCG00000013522	SAFB	96	45.443	ENSTNIG00000015470	safb	100	41.551	Tetraodon_nigroviridis
ENSSSCG00000013522	SAFB	70	83.333	ENSTBEG00000013124	-	66	93.846	Tupaia_belangeri
ENSSSCG00000013522	SAFB	90	96.825	ENSTTRG00000013588	SAFB	92	96.825	Tursiops_truncatus
ENSSSCG00000013522	SAFB	74	93.836	ENSUAMG00000024543	SAFB	100	95.506	Ursus_americanus
ENSSSCG00000013522	SAFB	89	92.794	ENSUMAG00000009734	SAFB	96	92.504	Ursus_maritimus
ENSSSCG00000013522	SAFB	69	100.000	ENSVPAG00000012043	SAFB	79	100.000	Vicugna_pacos
ENSSSCG00000013522	SAFB	99	96.144	ENSVVUG00000013720	SAFB	90	94.896	Vulpes_vulpes
ENSSSCG00000013522	SAFB	77	51.236	ENSXETG00000008755	safb	97	52.784	Xenopus_tropicalis
ENSSSCG00000013522	SAFB	94	40.026	ENSXMAG00000003458	safb	64	40.772	Xiphophorus_maculatus