EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000013650 (Gene tree)
Gene ID: 100526209
Gene Symbol: -
Alias: -
Full Name: ferredoxin-2%2C mitochondrial
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 30146 bases
Position: chr2:69120063-69150208
Accession: 100526209
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000047365	RRM_1	PF00076.22	4.7e-29	1	2
ENSSSCP00000047365	RRM_1	PF00076.22	4.7e-29	2	2
ENSSSCP00000019165	RRM_1	PF00076.22	5.4e-29	1	2
ENSSSCP00000019165	RRM_1	PF00076.22	5.4e-29	2	2
ENSSSCP00000029618	RRM_1	PF00076.22	6.8e-29	1	2
ENSSSCP00000029618	RRM_1	PF00076.22	6.8e-29	2	2
ENSSSCP00000057130	RRM_1	PF00076.22	6.8e-29	1	2
ENSSSCP00000057130	RRM_1	PF00076.22	6.8e-29	2	2
ENSSSCP00000014512	RRM_1	PF00076.22	6.9e-29	1	2
ENSSSCP00000014512	RRM_1	PF00076.22	6.9e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000030380	-	3392	-	ENSSSCP00000019165	714 (aa)	-	I3L566
ENSSSCT00000035712	-	6363	-	ENSSSCP00000029618	756 (aa)	-	K7GP09
ENSSSCT00000055902	-	3321	-	ENSSSCP00000047365	692 (aa)	-	A0A287AU24
ENSSSCT00000045457	-	3009	-	ENSSSCP00000057130	756 (aa)	-	K7GP09
ENSSSCT00000041123	-	5532	XM_003123218	ENSSSCP00000041733	186 (aa)	XP_003123266	A0A287ACW7
ENSSSCT00000014913	-	2774	-	ENSSSCP00000014512	761 (aa)	-	F1S3K5

Gene Model

Click here to download ENSSSCG00000013650's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000013650's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000013650	-	72	45.745	ENSSSCG00000025672	-	88	44.948

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000013650	-	100	92.999	ENSG00000161847	RAVER1	100	92.602	Homo_sapiens
ENSSSCG00000013650	-	78	73.077	ENSAPOG00000017267	raver1	84	50.919	Acanthochromis_polyacanthus
ENSSSCG00000013650	-	100	93.799	ENSAMEG00000011738	RAVER1	100	93.404	Ailuropoda_melanoleuca
ENSSSCG00000013650	-	78	73.077	ENSAOCG00000005128	raver1	88	51.133	Amphiprion_ocellaris
ENSSSCG00000013650	-	79	75.439	ENSAPEG00000010854	raver1	81	75.439	Amphiprion_percula
ENSSSCG00000013650	-	100	52.263	ENSATEG00000021004	raver1	86	64.775	Anabas_testudineus
ENSSSCG00000013650	-	86	61.728	ENSACAG00000008386	-	94	61.256	Anolis_carolinensis
ENSSSCG00000013650	-	100	92.074	ENSANAG00000028226	RAVER1	100	92.338	Aotus_nancymaae
ENSSSCG00000013650	-	78	77.193	ENSACLG00000018492	raver1	70	77.193	Astatotilapia_calliptera
ENSSSCG00000013650	-	86	78.333	ENSAMXG00000005132	raver1	85	79.661	Astyanax_mexicanus
ENSSSCG00000013650	-	100	96.229	ENSBTAG00000015721	RAVER1	100	96.403	Bos_taurus
ENSSSCG00000013650	-	100	92.206	ENSCJAG00000005671	RAVER1	100	92.470	Callithrix_jacchus
ENSSSCG00000013650	-	100	95.112	ENSCAFG00000017861	RAVER1	98	95.391	Canis_familiaris
ENSSSCG00000013650	-	100	95.112	ENSCAFG00020024449	RAVER1	100	95.391	Canis_lupus_dingo
ENSSSCG00000013650	-	98	92.308	ENSCHIG00000006718	RAVER1	100	92.578	Capra_hircus
ENSSSCG00000013650	-	91	90.000	ENSTSYG00000027107	RAVER1	100	90.000	Carlito_syrichta
ENSSSCG00000013650	-	88	88.306	ENSCAPG00000002269	RAVER1	100	88.456	Cavia_aperea
ENSSSCG00000013650	-	100	88.243	ENSCPOG00000001008	RAVER1	100	91.351	Cavia_porcellus
ENSSSCG00000013650	-	100	90.621	ENSCCAG00000031723	RAVER1	100	91.281	Cebus_capucinus
ENSSSCG00000013650	-	100	91.942	ENSCATG00000043863	RAVER1	100	92.602	Cercocebus_atys
ENSSSCG00000013650	-	98	91.779	ENSCLAG00000009336	RAVER1	100	90.701	Chinchilla_lanigera
ENSSSCG00000013650	-	100	92.206	ENSCSAG00000007317	RAVER1	86	92.867	Chlorocebus_sabaeus
ENSSSCG00000013650	-	96	64.933	ENSCPBG00000005349	-	96	63.867	Chrysemys_picta_bellii
ENSSSCG00000013650	-	100	92.074	ENSCANG00000008337	RAVER1	100	92.734	Colobus_angolensis_palliatus
ENSSSCG00000013650	-	98	90.701	ENSCGRG00001013260	-	100	90.431	Cricetulus_griseus_chok1gshd
ENSSSCG00000013650	-	98	90.701	ENSCGRG00000015138	-	100	90.431	Cricetulus_griseus_crigri
ENSSSCG00000013650	-	77	78.846	ENSCSEG00000021092	raver1	76	78.846	Cynoglossus_semilaevis
ENSSSCG00000013650	-	96	51.836	ENSCVAG00000013971	raver1	93	50.274	Cyprinodon_variegatus
ENSSSCG00000013650	-	96	52.662	ENSDARG00000052617	raver1	93	52.161	Danio_rerio
ENSSSCG00000013650	-	73	90.541	ENSDNOG00000035742	-	75	90.541	Dasypus_novemcinctus
ENSSSCG00000013650	-	100	82.361	ENSDORG00000010106	-	100	83.730	Dipodomys_ordii
ENSSSCG00000013650	-	70	74.074	ENSETEG00000008201	-	72	90.355	Echinops_telfairi
ENSSSCG00000013650	-	68	96.774	ENSEASG00005010544	-	93	92.791	Equus_asinus_asinus
ENSSSCG00000013650	-	100	94.723	ENSECAG00000024966	RAVER1	100	95.119	Equus_caballus
ENSSSCG00000013650	-	98	52.609	ENSELUG00000023287	raver1	93	52.841	Esox_lucius
ENSSSCG00000013650	-	100	95.119	ENSFCAG00000009435	RAVER1	100	94.723	Felis_catus
ENSSSCG00000013650	-	98	90.701	ENSFDAG00000015113	RAVER1	100	91.105	Fukomys_damarensis
ENSSSCG00000013650	-	96	52.489	ENSGMOG00000003649	raver1	75	84.000	Gadus_morhua
ENSSSCG00000013650	-	78	44.291	ENSGALG00000050608	-	54	45.753	Gallus_gallus
ENSSSCG00000013650	-	100	51.456	ENSGAFG00000015944	raver1	63	74.576	Gambusia_affinis
ENSSSCG00000013650	-	64	67.575	ENSGACG00000013818	raver1	99	50.264	Gasterosteus_aculeatus
ENSSSCG00000013650	-	96	65.193	ENSGAGG00000011748	-	96	77.151	Gopherus_agassizii
ENSSSCG00000013650	-	100	92.734	ENSGGOG00000006015	RAVER1	100	92.338	Gorilla_gorilla
ENSSSCG00000013650	-	71	82.353	ENSHBUG00000021210	raver1	69	75.000	Haplochromis_burtoni
ENSSSCG00000013650	-	98	90.701	ENSHGLG00000015460	RAVER1	100	90.027	Heterocephalus_glaber_female
ENSSSCG00000013650	-	98	90.701	ENSHGLG00100000812	RAVER1	100	90.027	Heterocephalus_glaber_male
ENSSSCG00000013650	-	98	52.039	ENSHCOG00000000449	raver1	91	51.120	Hippocampus_comes
ENSSSCG00000013650	-	78	87.755	ENSIPUG00000013153	raver1	73	87.755	Ictalurus_punctatus
ENSSSCG00000013650	-	98	94.197	ENSSTOG00000003241	RAVER1	100	94.062	Ictidomys_tridecemlineatus
ENSSSCG00000013650	-	98	91.667	ENSJJAG00000018219	-	100	90.995	Jaculus_jaculus
ENSSSCG00000013650	-	98	52.295	ENSKMAG00000017355	raver1	93	50.342	Kryptolebias_marmoratus
ENSSSCG00000013650	-	89	50.847	ENSLBEG00000008268	raver1	70	57.864	Labrus_bergylta
ENSSSCG00000013650	-	90	59.857	ENSLACG00000005809	-	79	88.679	Latimeria_chalumnae
ENSSSCG00000013650	-	96	55.890	ENSLOCG00000007500	raver1	94	54.398	Lepisosteus_oculatus
ENSSSCG00000013650	-	98	92.992	ENSLAFG00000003664	-	100	92.992	Loxodonta_africana
ENSSSCG00000013650	-	100	91.678	ENSMFAG00000037977	RAVER1	100	92.338	Macaca_fascicularis
ENSSSCG00000013650	-	100	91.942	ENSMMUG00000014897	RAVER1	100	92.602	Macaca_mulatta
ENSSSCG00000013650	-	100	91.942	ENSMNEG00000028390	RAVER1	100	92.602	Macaca_nemestrina
ENSSSCG00000013650	-	100	91.678	ENSMLEG00000041959	RAVER1	100	92.338	Mandrillus_leucophaeus
ENSSSCG00000013650	-	98	51.590	ENSMAMG00000012059	raver1	75	77.193	Mastacembelus_armatus
ENSSSCG00000013650	-	78	77.193	ENSMZEG00005019002	raver1	73	77.193	Maylandia_zebra
ENSSSCG00000013650	-	98	89.785	ENSMAUG00000017948	-	100	90.054	Mesocricetus_auratus
ENSSSCG00000013650	-	99	94.568	ENSMICG00000010326	RAVER1	99	94.568	Microcebus_murinus
ENSSSCG00000013650	-	98	90.836	ENSMOCG00000015553	-	100	90.566	Microtus_ochrogaster
ENSSSCG00000013650	-	81	77.193	ENSMMOG00000012093	raver1	75	77.193	Mola_mola
ENSSSCG00000013650	-	96	79.656	ENSMODG00000005584	-	89	79.370	Monodelphis_domestica
ENSSSCG00000013650	-	80	82.000	ENSMALG00000016569	raver1	75	82.000	Monopterus_albus
ENSSSCG00000013650	-	98	89.171	MGP_CAROLIEiJ_G0031860	-	100	88.904	Mus_caroli
ENSSSCG00000013650	-	98	89.439	ENSMUSG00000010205	Raver1	100	89.305	Mus_musculus
ENSSSCG00000013650	-	98	88.032	MGP_PahariEiJ_G0014726	-	100	88.697	Mus_pahari
ENSSSCG00000013650	-	98	89.305	MGP_SPRETEiJ_G0032984	-	100	89.171	Mus_spretus
ENSSSCG00000013650	-	100	94.987	ENSMPUG00000006712	RAVER1	100	94.591	Mustela_putorius_furo
ENSSSCG00000013650	-	100	93.994	ENSMLUG00000012328	RAVER1	100	93.994	Myotis_lucifugus
ENSSSCG00000013650	-	98	90.000	ENSNGAG00000001260	-	100	89.595	Nannospalax_galili
ENSSSCG00000013650	-	79	78.947	ENSNBRG00000010139	raver1	73	78.947	Neolamprologus_brichardi
ENSSSCG00000013650	-	100	91.546	ENSNLEG00000012181	RAVER1	100	92.206	Nomascus_leucogenys
ENSSSCG00000013650	-	90	76.054	ENSMEUG00000003281	-	100	75.753	Notamacropus_eugenii
ENSSSCG00000013650	-	98	91.509	ENSODEG00000016260	RAVER1	100	90.566	Octodon_degus
ENSSSCG00000013650	-	96	53.546	ENSONIG00000001559	raver1	79	77.193	Oreochromis_niloticus
ENSSSCG00000013650	-	100	85.582	ENSOCUG00000020918	RAVER1	100	84.788	Oryctolagus_cuniculus
ENSSSCG00000013650	-	64	83.673	ENSORLG00000005458	raver1	61	83.673	Oryzias_latipes
ENSSSCG00000013650	-	64	83.673	ENSORLG00020004392	raver1	61	83.673	Oryzias_latipes_hni
ENSSSCG00000013650	-	64	83.673	ENSORLG00015017222	raver1	61	83.673	Oryzias_latipes_hsok
ENSSSCG00000013650	-	96	50.862	ENSOMEG00000023956	raver1	67	81.633	Oryzias_melastigma
ENSSSCG00000013650	-	100	93.122	ENSOGAG00000011071	RAVER1	100	92.328	Otolemur_garnettii
ENSSSCG00000013650	-	100	90.897	ENSOARG00000015886	RAVER1	100	91.161	Ovis_aries
ENSSSCG00000013650	-	100	92.999	ENSPPAG00000002611	RAVER1	100	92.602	Pan_paniscus
ENSSSCG00000013650	-	100	95.515	ENSPPRG00000009912	RAVER1	100	95.119	Panthera_pardus
ENSSSCG00000013650	-	100	92.999	ENSPTRG00000010466	RAVER1	100	92.602	Pan_troglodytes
ENSSSCG00000013650	-	100	91.810	ENSPANG00000004122	RAVER1	100	92.470	Papio_anubis
ENSSSCG00000013650	-	98	90.444	ENSPEMG00000016411	-	100	91.252	Peromyscus_maniculatus_bairdii
ENSSSCG00000013650	-	100	80.860	ENSPCIG00000018695	-	99	82.781	Phascolarctos_cinereus
ENSSSCG00000013650	-	80	71.667	ENSPFOG00000007016	raver1	64	72.881	Poecilia_formosa
ENSSSCG00000013650	-	79	80.000	ENSPLAG00000020793	raver1	59	80.000	Poecilia_latipinna
ENSSSCG00000013650	-	96	53.561	ENSPMEG00000011220	raver1	91	52.535	Poecilia_mexicana
ENSSSCG00000013650	-	71	88.372	ENSPREG00000006864	raver1	66	88.372	Poecilia_reticulata
ENSSSCG00000013650	-	100	91.402	ENSPPYG00000010514	RAVER1	85	92.338	Pongo_abelii
ENSSSCG00000013650	-	100	93.816	ENSPCOG00000026605	RAVER1	100	93.289	Propithecus_coquereli
ENSSSCG00000013650	-	98	94.587	ENSPVAG00000003689	RAVER1	100	93.505	Pteropus_vampyrus
ENSSSCG00000013650	-	65	82.353	ENSPNYG00000013284	raver1	64	82.353	Pundamilia_nyererei
ENSSSCG00000013650	-	98	52.186	ENSPNAG00000015476	raver1	74	86.000	Pygocentrus_nattereri
ENSSSCG00000013650	-	98	88.770	ENSRNOG00000020710	Raver1	100	88.770	Rattus_norvegicus
ENSSSCG00000013650	-	100	93.263	ENSRBIG00000034702	RAVER1	100	92.867	Rhinopithecus_bieti
ENSSSCG00000013650	-	100	93.147	ENSRROG00000031186	RAVER1	98	93.427	Rhinopithecus_roxellana
ENSSSCG00000013650	-	100	91.888	ENSSBOG00000023423	RAVER1	98	92.168	Saimiri_boliviensis_boliviensis
ENSSSCG00000013650	-	90	80.492	ENSSHAG00000008181	-	90	80.031	Sarcophilus_harrisii
ENSSSCG00000013650	-	96	51.494	ENSSMAG00000004546	raver1	91	50.691	Scophthalmus_maximus
ENSSSCG00000013650	-	79	75.439	ENSSDUG00000021063	raver1	75	75.439	Seriola_dumerili
ENSSSCG00000013650	-	79	75.439	ENSSLDG00000014505	raver1	74	75.439	Seriola_lalandi_dorsalis
ENSSSCG00000013650	-	82	60.256	ENSSPAG00000000688	raver1	74	75.439	Stegastes_partitus
ENSSSCG00000013650	-	98	51.393	ENSTRUG00000025641	raver1	74	85.714	Takifugu_rubripes
ENSSSCG00000013650	-	98	95.940	ENSTTRG00000009552	RAVER1	100	95.940	Tursiops_truncatus
ENSSSCG00000013650	-	100	95.910	ENSUAMG00000020385	RAVER1	100	95.910	Ursus_americanus
ENSSSCG00000013650	-	100	95.112	ENSVVUG00000028976	RAVER1	98	95.391	Vulpes_vulpes
ENSSSCG00000013650	-	100	55.973	ENSXETG00000011622	raver1	100	55.436	Xenopus_tropicalis
ENSSSCG00000013650	-	99	51.781	ENSXCOG00000016368	raver1	94	50.203	Xiphophorus_couchianus
ENSSSCG00000013650	-	99	52.000	ENSXMAG00000000217	raver1	94	50.542	Xiphophorus_maculatus