EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000013744 (Gene tree)
Gene ID: 100627711
Gene Symbol: TRMT1
Alias: FLJ20244|TRM1
Full Name: tRNA methyltransferase 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 9429 bases
Position: chr2:65939868-65949296
Accession: 100627711
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000014613	zf-CCCH	PF00642.24	2.2e-06	1	1
ENSSSCP00000014613	TRM	PF02005.16	1.2e-150	1	1
ENSSSCP00000014613	Met_10	PF02475.16	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000015018	TRMT1-201	2292	XM_021079963	ENSSSCP00000014613	635 (aa)	XP_020935622	F1SD98

Gene Model

Click here to download ENSSSCG00000013744's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000013744's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000013744	TRMT1	98	90.400	ENSG00000104907	TRMT1	100	95.288	Homo_sapiens
ENSSSCG00000013744	TRMT1	100	90.752	ENSAMEG00000012598	TRMT1	95	90.752	Ailuropoda_melanoleuca
ENSSSCG00000013744	TRMT1	91	58.333	ENSACIG00000018680	trmt1	90	58.333	Amphilophus_citrinellus
ENSSSCG00000013744	TRMT1	90	65.749	ENSAOCG00000006781	trmt1	86	65.749	Amphiprion_ocellaris
ENSSSCG00000013744	TRMT1	90	65.744	ENSAPEG00000007712	trmt1	86	65.744	Amphiprion_percula
ENSSSCG00000013744	TRMT1	91	67.295	ENSATEG00000001872	trmt1	86	67.295	Anabas_testudineus
ENSSSCG00000013744	TRMT1	93	67.446	ENSACAG00000003825	TRMT1	96	67.446	Anolis_carolinensis
ENSSSCG00000013744	TRMT1	99	84.968	ENSANAG00000023016	TRMT1	99	86.731	Aotus_nancymaae
ENSSSCG00000013744	TRMT1	95	62.023	ENSACLG00000010073	trmt1	92	64.460	Astatotilapia_calliptera
ENSSSCG00000013744	TRMT1	91	66.667	ENSAMXG00000012026	trmt1	87	66.667	Astyanax_mexicanus
ENSSSCG00000013744	TRMT1	100	92.006	ENSBTAG00000019325	TRMT1	91	92.006	Bos_taurus
ENSSSCG00000013744	TRMT1	80	41.346	WBGene00006613	trm-1	93	41.346	Caenorhabditis_elegans
ENSSSCG00000013744	TRMT1	99	84.360	ENSCJAG00000004566	TRMT1	97	84.360	Callithrix_jacchus
ENSSSCG00000013744	TRMT1	100	91.536	ENSCAFG00000017070	TRMT1	100	91.536	Canis_familiaris
ENSSSCG00000013744	TRMT1	99	90.461	ENSCAFG00020005397	TRMT1	96	89.085	Canis_lupus_dingo
ENSSSCG00000013744	TRMT1	100	91.862	ENSCHIG00000013569	TRMT1	96	91.862	Capra_hircus
ENSSSCG00000013744	TRMT1	98	84.530	ENSTSYG00000003207	TRMT1	97	84.375	Carlito_syrichta
ENSSSCG00000013744	TRMT1	88	80.919	ENSCAPG00000003355	TRMT1	98	80.919	Cavia_aperea
ENSSSCG00000013744	TRMT1	99	84.579	ENSCPOG00000011754	TRMT1	95	84.579	Cavia_porcellus
ENSSSCG00000013744	TRMT1	97	85.737	ENSCCAG00000022263	TRMT1	99	85.737	Cebus_capucinus
ENSSSCG00000013744	TRMT1	87	73.996	ENSCATG00000038220	-	98	73.996	Cercocebus_atys
ENSSSCG00000013744	TRMT1	100	89.812	ENSCATG00000039850	TRMT1	96	89.812	Cercocebus_atys
ENSSSCG00000013744	TRMT1	98	87.680	ENSCLAG00000015295	TRMT1	97	83.784	Chinchilla_lanigera
ENSSSCG00000013744	TRMT1	79	90.891	ENSCSAG00000006500	TRMT1	95	90.891	Chlorocebus_sabaeus
ENSSSCG00000013744	TRMT1	93	69.882	ENSCPBG00000023866	TRMT1	87	69.882	Chrysemys_picta_bellii
ENSSSCG00000013744	TRMT1	86	46.112	ENSCING00000002884	-	98	46.112	Ciona_intestinalis
ENSSSCG00000013744	TRMT1	86	45.917	ENSCSAVG00000010927	-	100	46.168	Ciona_savignyi
ENSSSCG00000013744	TRMT1	95	69.787	ENSCANG00000031650	-	96	69.936	Colobus_angolensis_palliatus
ENSSSCG00000013744	TRMT1	100	73.125	ENSCANG00000040631	TRMT1	97	73.125	Colobus_angolensis_palliatus
ENSSSCG00000013744	TRMT1	99	84.738	ENSCGRG00001022594	Trmt1	96	84.738	Cricetulus_griseus_chok1gshd
ENSSSCG00000013744	TRMT1	99	84.738	ENSCGRG00000017732	Trmt1	94	84.738	Cricetulus_griseus_crigri
ENSSSCG00000013744	TRMT1	91	65.523	ENSCSEG00000001643	trmt1	84	68.164	Cynoglossus_semilaevis
ENSSSCG00000013744	TRMT1	90	67.133	ENSCVAG00000011886	trmt1	86	67.133	Cyprinodon_variegatus
ENSSSCG00000013744	TRMT1	90	66.437	ENSDARG00000010978	trmt1	85	66.609	Danio_rerio
ENSSSCG00000013744	TRMT1	87	63.636	ENSDNOG00000048240	-	95	63.636	Dasypus_novemcinctus
ENSSSCG00000013744	TRMT1	99	84.019	ENSDORG00000014298	Trmt1	96	84.019	Dipodomys_ordii
ENSSSCG00000013744	TRMT1	80	49.515	FBgn0032430	CG6388	87	49.515	Drosophila_melanogaster
ENSSSCG00000013744	TRMT1	53	86.567	ENSETEG00000015483	-	52	86.567	Echinops_telfairi
ENSSSCG00000013744	TRMT1	81	53.891	ENSEBUG00000003449	trmt1	76	53.359	Eptatretus_burgeri
ENSSSCG00000013744	TRMT1	98	89.600	ENSEASG00005004050	TRMT1	100	89.185	Equus_asinus_asinus
ENSSSCG00000013744	TRMT1	98	89.920	ENSECAG00000016149	TRMT1	100	89.498	Equus_caballus
ENSSSCG00000013744	TRMT1	63	72.613	ENSEEUG00000014102	-	100	72.613	Erinaceus_europaeus
ENSSSCG00000013744	TRMT1	94	63.921	ENSELUG00000021659	trmt1	89	63.921	Esox_lucius
ENSSSCG00000013744	TRMT1	100	89.655	ENSFCAG00000000483	TRMT1	97	89.655	Felis_catus
ENSSSCG00000013744	TRMT1	99	84.882	ENSFDAG00000007386	TRMT1	96	84.882	Fukomys_damarensis
ENSSSCG00000013744	TRMT1	91	64.384	ENSFHEG00000012865	trmt1	89	68.030	Fundulus_heteroclitus
ENSSSCG00000013744	TRMT1	90	61.228	ENSGMOG00000006564	trmt1	98	61.646	Gadus_morhua
ENSSSCG00000013744	TRMT1	95	64.909	ENSGAFG00000011862	trmt1	94	65.625	Gambusia_affinis
ENSSSCG00000013744	TRMT1	90	63.620	ENSGACG00000000227	trmt1	91	63.620	Gasterosteus_aculeatus
ENSSSCG00000013744	TRMT1	93	69.595	ENSGAGG00000016432	TRMT1	87	69.595	Gopherus_agassizii
ENSSSCG00000013744	TRMT1	98	90.720	ENSGGOG00000014007	TRMT1	97	90.439	Gorilla_gorilla
ENSSSCG00000013744	TRMT1	90	57.439	ENSHBUG00000008821	trmt1	95	57.439	Haplochromis_burtoni
ENSSSCG00000013744	TRMT1	99	84.543	ENSHGLG00000015972	TRMT1	96	84.543	Heterocephalus_glaber_female
ENSSSCG00000013744	TRMT1	99	78.425	ENSHGLG00100018112	TRMT1	97	78.425	Heterocephalus_glaber_male
ENSSSCG00000013744	TRMT1	90	63.573	ENSHCOG00000009447	trmt1	88	63.573	Hippocampus_comes
ENSSSCG00000013744	TRMT1	90	65.476	ENSIPUG00000002899	trmt1	86	65.604	Ictalurus_punctatus
ENSSSCG00000013744	TRMT1	100	88.419	ENSSTOG00000012531	TRMT1	98	88.419	Ictidomys_tridecemlineatus
ENSSSCG00000013744	TRMT1	93	86.745	ENSJJAG00000017154	Trmt1	96	84.152	Jaculus_jaculus
ENSSSCG00000013744	TRMT1	90	67.776	ENSKMAG00000011809	trmt1	98	64.597	Kryptolebias_marmoratus
ENSSSCG00000013744	TRMT1	90	66.783	ENSLBEG00000012703	trmt1	84	66.783	Labrus_bergylta
ENSSSCG00000013744	TRMT1	90	58.217	ENSLACG00000014585	TRMT1	99	56.343	Latimeria_chalumnae
ENSSSCG00000013744	TRMT1	91	61.760	ENSLOCG00000006479	trmt1	99	62.415	Lepisosteus_oculatus
ENSSSCG00000013744	TRMT1	99	88.748	ENSLAFG00000014072	TRMT1	97	88.748	Loxodonta_africana
ENSSSCG00000013744	TRMT1	100	89.969	ENSMFAG00000033143	TRMT1	96	89.969	Macaca_fascicularis
ENSSSCG00000013744	TRMT1	100	83.125	ENSMMUG00000001167	TRMT1	97	83.125	Macaca_mulatta
ENSSSCG00000013744	TRMT1	100	89.969	ENSMNEG00000037867	TRMT1	96	89.969	Macaca_nemestrina
ENSSSCG00000013744	TRMT1	100	89.498	ENSMLEG00000016142	TRMT1	97	89.498	Mandrillus_leucophaeus
ENSSSCG00000013744	TRMT1	90	67.133	ENSMAMG00000004357	trmt1	85	67.133	Mastacembelus_armatus
ENSSSCG00000013744	TRMT1	90	64.983	ENSMZEG00005014510	trmt1	85	64.983	Maylandia_zebra
ENSSSCG00000013744	TRMT1	98	84.345	ENSMAUG00000011134	Trmt1	95	84.069	Mesocricetus_auratus
ENSSSCG00000013744	TRMT1	99	89.796	ENSMICG00000000793	TRMT1	96	89.796	Microcebus_murinus
ENSSSCG00000013744	TRMT1	97	85.137	ENSMOCG00000015895	Trmt1	95	84.579	Microtus_ochrogaster
ENSSSCG00000013744	TRMT1	90	66.025	ENSMMOG00000011097	trmt1	92	66.025	Mola_mola
ENSSSCG00000013744	TRMT1	97	76.812	ENSMODG00000011619	TRMT1	100	76.812	Monodelphis_domestica
ENSSSCG00000013744	TRMT1	99	84.652	MGP_CAROLIEiJ_G0031304	Trmt1	100	84.674	Mus_caroli
ENSSSCG00000013744	TRMT1	99	84.335	ENSMUSG00000001909	Trmt1	100	84.291	Mus_musculus
ENSSSCG00000013744	TRMT1	99	84.177	MGP_SPRETEiJ_G0032422	Trmt1	100	83.908	Mus_spretus
ENSSSCG00000013744	TRMT1	100	90.282	ENSMPUG00000004210	TRMT1	91	90.282	Mustela_putorius_furo
ENSSSCG00000013744	TRMT1	100	89.969	ENSMLUG00000012809	TRMT1	95	89.969	Myotis_lucifugus
ENSSSCG00000013744	TRMT1	99	83.881	ENSNGAG00000022486	Trmt1	96	83.881	Nannospalax_galili
ENSSSCG00000013744	TRMT1	78	67.847	ENSNBRG00000024376	trmt1	85	67.847	Neolamprologus_brichardi
ENSSSCG00000013744	TRMT1	79	88.785	ENSNLEG00000013019	-	96	88.785	Nomascus_leucogenys
ENSSSCG00000013744	TRMT1	94	76.174	ENSMEUG00000013756	TRMT1	100	76.174	Notamacropus_eugenii
ENSSSCG00000013744	TRMT1	82	87.444	ENSOPRG00000009471	-	78	87.444	Ochotona_princeps
ENSSSCG00000013744	TRMT1	98	85.737	ENSODEG00000010323	TRMT1	95	85.737	Octodon_degus
ENSSSCG00000013744	TRMT1	94	65.662	ENSONIG00000000400	trmt1	95	65.662	Oreochromis_niloticus
ENSSSCG00000013744	TRMT1	79	90.297	ENSOCUG00000021934	TRMT1	95	90.297	Oryctolagus_cuniculus
ENSSSCG00000013744	TRMT1	93	60.601	ENSORLG00000020074	trmt1	93	60.601	Oryzias_latipes
ENSSSCG00000013744	TRMT1	93	63.345	ENSORLG00020007561	trmt1	92	63.176	Oryzias_latipes_hni
ENSSSCG00000013744	TRMT1	90	65.499	ENSORLG00015006547	trmt1	86	65.499	Oryzias_latipes_hsok
ENSSSCG00000013744	TRMT1	90	65.969	ENSOMEG00000019343	trmt1	86	65.969	Oryzias_melastigma
ENSSSCG00000013744	TRMT1	97	86.151	ENSOGAG00000025576	TRMT1	97	86.151	Otolemur_garnettii
ENSSSCG00000013744	TRMT1	100	75.545	ENSOARG00000009397	TRMT1	90	75.857	Ovis_aries
ENSSSCG00000013744	TRMT1	100	81.505	ENSPPRG00000012117	TRMT1	98	81.505	Panthera_pardus
ENSSSCG00000013744	TRMT1	77	92.405	ENSPTIG00000008833	TRMT1	94	92.405	Panthera_tigris_altaica
ENSSSCG00000013744	TRMT1	98	90.560	ENSPTRG00000010557	TRMT1	97	90.282	Pan_troglodytes
ENSSSCG00000013744	TRMT1	99	68.088	ENSPTRG00000050421	-	96	68.088	Pan_troglodytes
ENSSSCG00000013744	TRMT1	88	73.542	ENSPANG00000034058	-	96	73.542	Papio_anubis
ENSSSCG00000013744	TRMT1	100	89.969	ENSPANG00000009247	TRMT1	96	89.969	Papio_anubis
ENSSSCG00000013744	TRMT1	96	65.794	ENSPKIG00000005309	trmt1	89	65.794	Paramormyrops_kingsleyae
ENSSSCG00000013744	TRMT1	91	59.215	ENSPSIG00000008762	TRMT1	83	59.215	Pelodiscus_sinensis
ENSSSCG00000013744	TRMT1	95	63.455	ENSPMGG00000019764	trmt1	95	63.621	Periophthalmus_magnuspinnatus
ENSSSCG00000013744	TRMT1	97	86.935	ENSPEMG00000016247	Trmt1	95	85.804	Peromyscus_maniculatus_bairdii
ENSSSCG00000013744	TRMT1	91	59.552	ENSPMAG00000004329	trmt1	91	59.552	Petromyzon_marinus
ENSSSCG00000013744	TRMT1	97	75.929	ENSPCIG00000019273	TRMT1	96	75.929	Phascolarctos_cinereus
ENSSSCG00000013744	TRMT1	93	67.613	ENSPFOG00000008527	trmt1	92	67.613	Poecilia_formosa
ENSSSCG00000013744	TRMT1	93	67.446	ENSPLAG00000018788	trmt1	92	70.185	Poecilia_latipinna
ENSSSCG00000013744	TRMT1	93	67.785	ENSPMEG00000013120	trmt1	92	67.785	Poecilia_mexicana
ENSSSCG00000013744	TRMT1	90	67.483	ENSPREG00000000211	trmt1	85	68.237	Poecilia_reticulata
ENSSSCG00000013744	TRMT1	98	90.240	ENSPPYG00000009622	TRMT1	97	89.969	Pongo_abelii
ENSSSCG00000013744	TRMT1	99	80.159	ENSPCAG00000003698	TRMT1	96	80.159	Procavia_capensis
ENSSSCG00000013744	TRMT1	99	89.325	ENSPCOG00000008653	TRMT1	97	89.325	Propithecus_coquereli
ENSSSCG00000013744	TRMT1	100	90.439	ENSPVAG00000015076	TRMT1	97	90.439	Pteropus_vampyrus
ENSSSCG00000013744	TRMT1	90	63.415	ENSPNYG00000013960	trmt1	92	63.415	Pundamilia_nyererei
ENSSSCG00000013744	TRMT1	84	68.323	ENSPNAG00000024859	trmt1	88	68.323	Pygocentrus_nattereri
ENSSSCG00000013744	TRMT1	99	85.127	ENSRNOG00000002914	Trmt1	99	85.127	Rattus_norvegicus
ENSSSCG00000013744	TRMT1	95	70.704	ENSRBIG00000037505	-	97	70.673	Rhinopithecus_bieti
ENSSSCG00000013744	TRMT1	100	89.342	ENSRBIG00000038324	TRMT1	96	89.342	Rhinopithecus_bieti
ENSSSCG00000013744	TRMT1	95	69.722	ENSRROG00000031847	-	96	69.712	Rhinopithecus_roxellana
ENSSSCG00000013744	TRMT1	100	89.185	ENSRROG00000028599	TRMT1	96	89.185	Rhinopithecus_roxellana
ENSSSCG00000013744	TRMT1	80	37.853	YDR120C	-	92	38.041	Saccharomyces_cerevisiae
ENSSSCG00000013744	TRMT1	100	83.699	ENSSBOG00000028861	TRMT1	99	85.900	Saimiri_boliviensis_boliviensis
ENSSSCG00000013744	TRMT1	90	79.652	ENSSHAG00000014381	TRMT1	99	76.748	Sarcophilus_harrisii
ENSSSCG00000013744	TRMT1	91	67.414	ENSSFOG00015004139	trmt1	85	67.530	Scleropages_formosus
ENSSSCG00000013744	TRMT1	90	66.093	ENSSMAG00000021136	trmt1	86	66.093	Scophthalmus_maximus
ENSSSCG00000013744	TRMT1	90	66.899	ENSSDUG00000012740	trmt1	84	66.899	Seriola_dumerili
ENSSSCG00000013744	TRMT1	90	66.725	ENSSLDG00000005971	trmt1	84	66.725	Seriola_lalandi_dorsalis
ENSSSCG00000013744	TRMT1	85	86.630	ENSSARG00000005138	TRMT1	96	86.630	Sorex_araneus
ENSSSCG00000013744	TRMT1	92	56.143	ENSSPUG00000001084	TRMT1	92	56.485	Sphenodon_punctatus
ENSSSCG00000013744	TRMT1	91	64.421	ENSSPAG00000007153	trmt1	95	64.421	Stegastes_partitus
ENSSSCG00000013744	TRMT1	89	62.111	ENSTRUG00000010700	trmt1	86	62.457	Takifugu_rubripes
ENSSSCG00000013744	TRMT1	90	65.849	ENSTNIG00000018808	trmt1	98	65.849	Tetraodon_nigroviridis
ENSSSCG00000013744	TRMT1	100	90.909	ENSTTRG00000006379	TRMT1	97	90.909	Tursiops_truncatus
ENSSSCG00000013744	TRMT1	100	90.596	ENSUAMG00000022911	TRMT1	98	90.596	Ursus_americanus
ENSSSCG00000013744	TRMT1	100	90.125	ENSUMAG00000006027	TRMT1	100	90.125	Ursus_maritimus
ENSSSCG00000013744	TRMT1	100	91.223	ENSVVUG00000024177	TRMT1	96	91.223	Vulpes_vulpes
ENSSSCG00000013744	TRMT1	72	72.234	ENSXETG00000033863	TRMT1	92	72.234	Xenopus_tropicalis
ENSSSCG00000013744	TRMT1	91	67.126	ENSXCOG00000015733	trmt1	88	68.237	Xiphophorus_couchianus
ENSSSCG00000013744	TRMT1	92	66.610	ENSXMAG00000013823	trmt1	99	67.350	Xiphophorus_maculatus