EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000014009 (Gene tree)
Gene ID: 100516183
Gene Symbol: CNOT6
Alias: CCR4|Ccr4a|KIAA1194
Full Name: CCR4-NOT transcription complex subunit 6
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 71663 bases
Position: chr2:78130842-78202504
Accession: 100516183
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000052003	Exo_endo_phos	PF03372.23	1.4e-21	1	1
ENSSSCP00000014894	Exo_endo_phos	PF03372.23	2.3e-21	1	1
ENSSSCP00000037899	Exo_endo_phos	PF03372.23	2.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000044313	CNOT6-203	3840	XM_013994860	ENSSSCP00000052003	462 (aa)	XP_013850314	A0A287B6C8
ENSSSCT00000015302	CNOT6-202	6174	XM_003123627	ENSSSCP00000014894	552 (aa)	XP_003123675	F1S5Q4
ENSSSCT00000047369	CNOT6-201	6789	XM_013994856	ENSSSCP00000037899	557 (aa)	XP_013850310	A0A287A1V1

Gene Model

Click here to download ENSSSCG00000014009's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000014009's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000014009	CNOT6	100	79.710	ENSSSCG00000008989	CNOT6L	100	79.710
ENSSSCG00000014009	CNOT6	76	30.000	ENSSSCG00000011465	-	52	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000014009	CNOT6	100	97.186	ENSG00000113300	CNOT6	100	100.000	Homo_sapiens
ENSSSCG00000014009	CNOT6	100	87.120	ENSAPOG00000009994	cnot6b	100	87.120	Acanthochromis_polyacanthus
ENSSSCG00000014009	CNOT6	100	98.491	ENSAMEG00000000949	CNOT6	99	98.390	Ailuropoda_melanoleuca
ENSSSCG00000014009	CNOT6	100	86.462	ENSACIG00000016566	cnot6b	100	86.462	Amphilophus_citrinellus
ENSSSCG00000014009	CNOT6	100	87.120	ENSAOCG00000006893	cnot6b	100	87.120	Amphiprion_ocellaris
ENSSSCG00000014009	CNOT6	100	87.120	ENSAPEG00000016949	cnot6b	100	87.120	Amphiprion_percula
ENSSSCG00000014009	CNOT6	100	84.973	ENSATEG00000007862	cnot6b	100	84.973	Anabas_testudineus
ENSSSCG00000014009	CNOT6	100	95.887	ENSAPLG00000012715	CNOT6	99	95.871	Anas_platyrhynchos
ENSSSCG00000014009	CNOT6	100	93.537	ENSACAG00000016548	CNOT6	100	93.537	Anolis_carolinensis
ENSSSCG00000014009	CNOT6	100	97.835	ENSANAG00000030436	CNOT6	96	97.487	Aotus_nancymaae
ENSSSCG00000014009	CNOT6	100	84.973	ENSACLG00000008279	cnot6b	100	85.868	Astatotilapia_calliptera
ENSSSCG00000014009	CNOT6	100	86.738	ENSAMXG00000019140	cnot6a	100	86.738	Astyanax_mexicanus
ENSSSCG00000014009	CNOT6	100	85.663	ENSAMXG00000034694	cnot6b	100	85.663	Astyanax_mexicanus
ENSSSCG00000014009	CNOT6	100	99.351	ENSBTAG00000017362	CNOT6	100	99.102	Bos_taurus
ENSSSCG00000014009	CNOT6	100	97.835	ENSCJAG00000009795	CNOT6	100	97.307	Callithrix_jacchus
ENSSSCG00000014009	CNOT6	100	99.134	ENSCAFG00000000464	CNOT6	100	98.743	Canis_familiaris
ENSSSCG00000014009	CNOT6	100	99.134	ENSCAFG00020002441	CNOT6	100	98.743	Canis_lupus_dingo
ENSSSCG00000014009	CNOT6	100	98.701	ENSCHIG00000019100	CNOT6	100	98.564	Capra_hircus
ENSSSCG00000014009	CNOT6	100	95.512	ENSTSYG00000003982	CNOT6	100	95.512	Carlito_syrichta
ENSSSCG00000014009	CNOT6	100	92.280	ENSCPOG00000035657	CNOT6	100	92.280	Cavia_porcellus
ENSSSCG00000014009	CNOT6	100	92.819	ENSCCAG00000033670	CNOT6	100	92.819	Cebus_capucinus
ENSSSCG00000014009	CNOT6	100	97.403	ENSCATG00000042014	CNOT6	100	97.127	Cercocebus_atys
ENSSSCG00000014009	CNOT6	100	96.104	ENSCLAG00000010489	CNOT6	100	96.050	Chinchilla_lanigera
ENSSSCG00000014009	CNOT6	100	97.403	ENSCSAG00000008165	CNOT6	100	97.127	Chlorocebus_sabaeus
ENSSSCG00000014009	CNOT6	100	97.619	ENSCHOG00000009680	CNOT6	100	96.948	Choloepus_hoffmanni
ENSSSCG00000014009	CNOT6	100	95.153	ENSCPBG00000008908	CNOT6	100	95.153	Chrysemys_picta_bellii
ENSSSCG00000014009	CNOT6	100	97.619	ENSCANG00000026756	CNOT6	100	97.307	Colobus_angolensis_palliatus
ENSSSCG00000014009	CNOT6	100	96.377	ENSCGRG00001011452	Cnot6	100	96.377	Cricetulus_griseus_chok1gshd
ENSSSCG00000014009	CNOT6	100	94.156	ENSCGRG00000010407	Cnot6	100	93.896	Cricetulus_griseus_crigri
ENSSSCG00000014009	CNOT6	100	86.047	ENSCSEG00000010939	cnot6b	100	86.047	Cynoglossus_semilaevis
ENSSSCG00000014009	CNOT6	100	85.484	ENSCVAG00000010538	cnot6b	100	85.484	Cyprinodon_variegatus
ENSSSCG00000014009	CNOT6	100	86.559	ENSDARG00000008255	cnot6a	100	86.559	Danio_rerio
ENSSSCG00000014009	CNOT6	100	84.665	ENSDARG00000101072	cnot6b	100	84.409	Danio_rerio
ENSSSCG00000014009	CNOT6	100	97.619	ENSDNOG00000041644	CNOT6	100	97.307	Dasypus_novemcinctus
ENSSSCG00000014009	CNOT6	100	86.355	ENSDORG00000001708	Cnot6	100	86.355	Dipodomys_ordii
ENSSSCG00000014009	CNOT6	100	77.996	ENSETEG00000006975	CNOT6	100	77.996	Echinops_telfairi
ENSSSCG00000014009	CNOT6	100	98.052	ENSEASG00005012794	-	100	97.846	Equus_asinus_asinus
ENSSSCG00000014009	CNOT6	100	92.424	ENSEASG00005012957	-	99	93.535	Equus_asinus_asinus
ENSSSCG00000014009	CNOT6	100	98.701	ENSECAG00000019325	CNOT6	100	98.564	Equus_caballus
ENSSSCG00000014009	CNOT6	100	92.935	ENSECAG00000012704	-	99	92.935	Equus_caballus
ENSSSCG00000014009	CNOT6	100	96.970	ENSEEUG00000015382	CNOT6	100	96.948	Erinaceus_europaeus
ENSSSCG00000014009	CNOT6	100	83.422	ENSELUG00000015981	cnot6b	99	83.422	Esox_lucius
ENSSSCG00000014009	CNOT6	100	82.079	ENSELUG00000024580	cnot6a	100	82.079	Esox_lucius
ENSSSCG00000014009	CNOT6	100	98.918	ENSFCAG00000001881	CNOT6	100	98.743	Felis_catus
ENSSSCG00000014009	CNOT6	100	96.104	ENSFALG00000007699	CNOT6	100	96.050	Ficedula_albicollis
ENSSSCG00000014009	CNOT6	100	95.887	ENSFDAG00000001999	CNOT6	100	95.871	Fukomys_damarensis
ENSSSCG00000014009	CNOT6	65	88.095	ENSFHEG00000013756	cnot6b	94	92.308	Fundulus_heteroclitus
ENSSSCG00000014009	CNOT6	95	85.066	ENSGMOG00000009767	cnot6b	99	85.066	Gadus_morhua
ENSSSCG00000014009	CNOT6	100	96.104	ENSGALG00000034316	CNOT6	100	96.050	Gallus_gallus
ENSSSCG00000014009	CNOT6	100	85.663	ENSGAFG00000008525	cnot6b	100	85.663	Gambusia_affinis
ENSSSCG00000014009	CNOT6	95	83.176	ENSGACG00000018046	cnot6b	99	83.176	Gasterosteus_aculeatus
ENSSSCG00000014009	CNOT6	100	79.713	ENSGAGG00000012176	CNOT6	100	79.713	Gopherus_agassizii
ENSSSCG00000014009	CNOT6	100	97.186	ENSGGOG00000003675	CNOT6	100	97.127	Gorilla_gorilla
ENSSSCG00000014009	CNOT6	100	85.152	ENSHBUG00000002819	cnot6b	100	86.047	Haplochromis_burtoni
ENSSSCG00000014009	CNOT6	100	96.320	ENSHGLG00000017756	CNOT6	100	96.230	Heterocephalus_glaber_female
ENSSSCG00000014009	CNOT6	100	96.320	ENSHGLG00100005747	CNOT6	100	96.230	Heterocephalus_glaber_male
ENSSSCG00000014009	CNOT6	100	84.296	ENSHCOG00000016176	cnot6b	100	85.199	Hippocampus_comes
ENSSSCG00000014009	CNOT6	100	85.663	ENSIPUG00000019831	cnot6a	100	85.663	Ictalurus_punctatus
ENSSSCG00000014009	CNOT6	100	85.125	ENSIPUG00000017482	cnot6b	100	85.125	Ictalurus_punctatus
ENSSSCG00000014009	CNOT6	100	97.403	ENSSTOG00000002803	CNOT6	100	97.127	Ictidomys_tridecemlineatus
ENSSSCG00000014009	CNOT6	100	95.887	ENSJJAG00000012296	Cnot6	100	95.332	Jaculus_jaculus
ENSSSCG00000014009	CNOT6	100	86.918	ENSKMAG00000004640	cnot6b	100	86.918	Kryptolebias_marmoratus
ENSSSCG00000014009	CNOT6	100	84.079	ENSLBEG00000027917	cnot6b	100	84.973	Labrus_bergylta
ENSSSCG00000014009	CNOT6	100	89.964	ENSLOCG00000010102	cnot6b	99	89.964	Lepisosteus_oculatus
ENSSSCG00000014009	CNOT6	100	98.268	ENSLAFG00000016742	CNOT6	100	98.205	Loxodonta_africana
ENSSSCG00000014009	CNOT6	100	97.403	ENSMFAG00000030867	CNOT6	100	97.127	Macaca_fascicularis
ENSSSCG00000014009	CNOT6	100	97.403	ENSMMUG00000018690	CNOT6	100	97.127	Macaca_mulatta
ENSSSCG00000014009	CNOT6	100	97.403	ENSMNEG00000038565	CNOT6	100	97.127	Macaca_nemestrina
ENSSSCG00000014009	CNOT6	100	97.403	ENSMLEG00000010555	CNOT6	100	97.127	Mandrillus_leucophaeus
ENSSSCG00000014009	CNOT6	100	87.120	ENSMAMG00000007515	cnot6b	100	87.120	Mastacembelus_armatus
ENSSSCG00000014009	CNOT6	100	84.973	ENSMZEG00005012899	cnot6b	100	85.868	Maylandia_zebra
ENSSSCG00000014009	CNOT6	100	96.970	ENSMAUG00000019798	Cnot6	100	96.409	Mesocricetus_auratus
ENSSSCG00000014009	CNOT6	100	85.281	ENSMICG00000028378	-	99	86.949	Microcebus_murinus
ENSSSCG00000014009	CNOT6	100	95.691	ENSMICG00000013018	-	100	95.691	Microcebus_murinus
ENSSSCG00000014009	CNOT6	100	97.186	ENSMOCG00000021662	Cnot6	100	96.409	Microtus_ochrogaster
ENSSSCG00000014009	CNOT6	100	84.629	ENSMMOG00000003227	cnot6b	100	84.629	Mola_mola
ENSSSCG00000014009	CNOT6	100	96.320	ENSMODG00000003979	CNOT6	100	96.050	Monodelphis_domestica
ENSSSCG00000014009	CNOT6	100	86.762	ENSMALG00000014251	cnot6b	100	86.762	Monopterus_albus
ENSSSCG00000014009	CNOT6	100	97.186	MGP_CAROLIEiJ_G0016277	Cnot6	100	96.589	Mus_caroli
ENSSSCG00000014009	CNOT6	100	97.186	ENSMUSG00000020362	Cnot6	100	96.589	Mus_musculus
ENSSSCG00000014009	CNOT6	100	97.186	MGP_PahariEiJ_G0017413	Cnot6	100	96.589	Mus_pahari
ENSSSCG00000014009	CNOT6	100	96.753	MGP_SPRETEiJ_G0017122	Cnot6	100	96.230	Mus_spretus
ENSSSCG00000014009	CNOT6	100	98.701	ENSMPUG00000000587	CNOT6	96	98.564	Mustela_putorius_furo
ENSSSCG00000014009	CNOT6	100	96.360	ENSMLUG00000010257	CNOT6	100	95.907	Myotis_lucifugus
ENSSSCG00000014009	CNOT6	100	95.671	ENSNGAG00000008269	Cnot6	100	95.332	Nannospalax_galili
ENSSSCG00000014009	CNOT6	100	85.152	ENSNBRG00000010798	cnot6b	100	86.047	Neolamprologus_brichardi
ENSSSCG00000014009	CNOT6	100	96.739	ENSNLEG00000002322	CNOT6	100	96.739	Nomascus_leucogenys
ENSSSCG00000014009	CNOT6	81	97.196	ENSMEUG00000000025	CNOT6	81	97.196	Notamacropus_eugenii
ENSSSCG00000014009	CNOT6	88	95.704	ENSOPRG00000008244	-	88	95.704	Ochotona_princeps
ENSSSCG00000014009	CNOT6	100	95.887	ENSODEG00000007041	CNOT6	100	95.691	Octodon_degus
ENSSSCG00000014009	CNOT6	75	85.106	ENSONIG00000013027	cnot6b	99	85.106	Oreochromis_niloticus
ENSSSCG00000014009	CNOT6	100	95.022	ENSOANG00000010226	CNOT6	100	94.794	Ornithorhynchus_anatinus
ENSSSCG00000014009	CNOT6	100	96.422	ENSOCUG00000011083	CNOT6	100	96.422	Oryctolagus_cuniculus
ENSSSCG00000014009	CNOT6	100	85.868	ENSORLG00000005059	cnot6b	100	85.868	Oryzias_latipes
ENSSSCG00000014009	CNOT6	100	85.868	ENSORLG00020012784	cnot6b	100	85.868	Oryzias_latipes_hni
ENSSSCG00000014009	CNOT6	100	84.483	ENSORLG00015022658	cnot6b	98	85.086	Oryzias_latipes_hsok
ENSSSCG00000014009	CNOT6	100	85.689	ENSOMEG00000005295	cnot6b	100	85.689	Oryzias_melastigma
ENSSSCG00000014009	CNOT6	100	97.414	ENSOGAG00000032470	CNOT6	100	96.947	Otolemur_garnettii
ENSSSCG00000014009	CNOT6	100	98.491	ENSOARG00000001003	CNOT6	100	98.339	Ovis_aries
ENSSSCG00000014009	CNOT6	100	97.186	ENSPPAG00000032253	CNOT6	100	97.127	Pan_paniscus
ENSSSCG00000014009	CNOT6	100	98.701	ENSPPRG00000011912	CNOT6	100	98.564	Panthera_pardus
ENSSSCG00000014009	CNOT6	100	98.701	ENSPTIG00000016794	CNOT6	100	98.564	Panthera_tigris_altaica
ENSSSCG00000014009	CNOT6	100	97.186	ENSPTRG00000017636	CNOT6	100	97.127	Pan_troglodytes
ENSSSCG00000014009	CNOT6	100	97.403	ENSPANG00000016191	CNOT6	100	97.127	Papio_anubis
ENSSSCG00000014009	CNOT6	100	86.918	ENSPKIG00000021368	cnot6b	100	86.918	Paramormyrops_kingsleyae
ENSSSCG00000014009	CNOT6	100	95.455	ENSPSIG00000017307	CNOT6	100	95.588	Pelodiscus_sinensis
ENSSSCG00000014009	CNOT6	100	86.282	ENSPMGG00000011238	cnot6b	100	86.282	Periophthalmus_magnuspinnatus
ENSSSCG00000014009	CNOT6	100	96.320	ENSPEMG00000000627	Cnot6	100	95.332	Peromyscus_maniculatus_bairdii
ENSSSCG00000014009	CNOT6	100	96.104	ENSPCIG00000020319	CNOT6	99	95.871	Phascolarctos_cinereus
ENSSSCG00000014009	CNOT6	100	85.484	ENSPFOG00000006291	cnot6b	100	85.484	Poecilia_formosa
ENSSSCG00000014009	CNOT6	100	82.098	ENSPLAG00000008266	cnot6b	100	82.098	Poecilia_latipinna
ENSSSCG00000014009	CNOT6	100	85.663	ENSPMEG00000009091	cnot6b	100	85.663	Poecilia_mexicana
ENSSSCG00000014009	CNOT6	100	84.991	ENSPREG00000003713	cnot6b	100	84.991	Poecilia_reticulata
ENSSSCG00000014009	CNOT6	100	97.186	ENSPPYG00000016137	CNOT6	100	97.127	Pongo_abelii
ENSSSCG00000014009	CNOT6	71	96.992	ENSPCAG00000005599	-	71	96.992	Procavia_capensis
ENSSSCG00000014009	CNOT6	99	93.640	ENSPCOG00000017359	CNOT6	100	92.280	Propithecus_coquereli
ENSSSCG00000014009	CNOT6	100	92.998	ENSPVAG00000003069	CNOT6	100	92.998	Pteropus_vampyrus
ENSSSCG00000014009	CNOT6	100	84.794	ENSPNYG00000000321	cnot6b	100	85.689	Pundamilia_nyererei
ENSSSCG00000014009	CNOT6	100	85.484	ENSPNAG00000028816	cnot6b	100	85.484	Pygocentrus_nattereri
ENSSSCG00000014009	CNOT6	100	86.918	ENSPNAG00000029586	cnot6a	100	86.918	Pygocentrus_nattereri
ENSSSCG00000014009	CNOT6	100	95.887	ENSRNOG00000054891	Cnot6	100	95.512	Rattus_norvegicus
ENSSSCG00000014009	CNOT6	100	97.186	ENSRBIG00000004309	CNOT6	100	96.948	Rhinopithecus_bieti
ENSSSCG00000014009	CNOT6	100	97.186	ENSRROG00000035378	CNOT6	100	97.186	Rhinopithecus_roxellana
ENSSSCG00000014009	CNOT6	100	97.619	ENSSBOG00000030494	CNOT6	100	97.307	Saimiri_boliviensis_boliviensis
ENSSSCG00000014009	CNOT6	100	96.104	ENSSHAG00000017436	CNOT6	100	95.871	Sarcophilus_harrisii
ENSSSCG00000014009	CNOT6	100	88.172	ENSSFOG00015015133	CNOT6	100	88.172	Scleropages_formosus
ENSSSCG00000014009	CNOT6	100	86.201	ENSSFOG00015022383	cnot6a	96	86.201	Scleropages_formosus
ENSSSCG00000014009	CNOT6	100	84.973	ENSSMAG00000003084	cnot6b	100	84.973	Scophthalmus_maximus
ENSSSCG00000014009	CNOT6	100	86.583	ENSSDUG00000004151	cnot6b	100	86.583	Seriola_dumerili
ENSSSCG00000014009	CNOT6	100	85.868	ENSSLDG00000004448	cnot6b	100	86.762	Seriola_lalandi_dorsalis
ENSSSCG00000014009	CNOT6	77	77.933	ENSSARG00000012650	-	100	77.933	Sorex_araneus
ENSSSCG00000014009	CNOT6	100	95.153	ENSSPUG00000007893	CNOT6	100	95.153	Sphenodon_punctatus
ENSSSCG00000014009	CNOT6	100	86.941	ENSSPAG00000000149	cnot6b	100	86.941	Stegastes_partitus
ENSSSCG00000014009	CNOT6	100	95.691	ENSTGUG00000001119	CNOT6	100	95.691	Taeniopygia_guttata
ENSSSCG00000014009	CNOT6	100	84.201	ENSTRUG00000002818	cnot6b	100	84.201	Takifugu_rubripes
ENSSSCG00000014009	CNOT6	100	84.560	ENSTNIG00000004443	cnot6b	99	84.560	Tetraodon_nigroviridis
ENSSSCG00000014009	CNOT6	87	67.556	ENSTBEG00000017094	-	100	67.556	Tupaia_belangeri
ENSSSCG00000014009	CNOT6	100	98.918	ENSTTRG00000009363	CNOT6	100	98.743	Tursiops_truncatus
ENSSSCG00000014009	CNOT6	93	98.834	ENSUAMG00000004579	CNOT6	88	98.834	Ursus_americanus
ENSSSCG00000014009	CNOT6	100	94.007	ENSUMAG00000024577	CNOT6	100	94.007	Ursus_maritimus
ENSSSCG00000014009	CNOT6	93	97.430	ENSVPAG00000003593	CNOT6	83	97.430	Vicugna_pacos
ENSSSCG00000014009	CNOT6	100	99.134	ENSVVUG00000026940	CNOT6	100	98.743	Vulpes_vulpes
ENSSSCG00000014009	CNOT6	100	82.459	ENSXCOG00000003360	cnot6b	100	82.459	Xiphophorus_couchianus
ENSSSCG00000014009	CNOT6	100	85.663	ENSXMAG00000008730	cnot6b	100	85.663	Xiphophorus_maculatus