EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000014177 (Gene tree)
Gene ID: 100525390
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 90044 bases
Position: chr2:105113163-105203206
Accession: 100525390
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000040297	ResIII	PF04851.15	4.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000015489	CHD1-203	5674	XM_021085399	ENSSSCP00000015079	1665 (aa)	XP_020941058	F1RN66
ENSSSCT00000032432	CHD1-201	8692	XM_021085397	ENSSSCP00000023979	1706 (aa)	XP_020941056	I3LIS2
ENSSSCT00000022643	CHD1-204	4961	-	ENSSSCP00000019685	1456 (aa)	-	I3L6N4
ENSSSCT00000056887	CHD1-202	8239	-	ENSSSCP00000040297	1472 (aa)	-	A0A287A8J0

Gene Model

Click here to download ENSSSCG00000014177's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000014177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000014177	CHD1	95	64.718	ENSSSCG00000002266	-	80	68.392

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000014177	CHD1	100	98.106	ENSG00000153922	CHD1	92	96.154	Homo_sapiens
ENSSSCG00000014177	CHD1	78	83.030	ENSAPOG00000005764	chd1	97	83.232	Acanthochromis_polyacanthus
ENSSSCG00000014177	CHD1	87	82.059	ENSAOCG00000023105	chd1	81	82.059	Amphiprion_ocellaris
ENSSSCG00000014177	CHD1	87	83.476	ENSAPEG00000013544	chd1	81	83.476	Amphiprion_percula
ENSSSCG00000014177	CHD1	84	82.010	ENSAMXG00000010843	chd1	91	84.343	Astyanax_mexicanus
ENSSSCG00000014177	CHD1	100	97.973	ENSCATG00000032035	CHD1	86	98.078	Cercocebus_atys
ENSSSCG00000014177	CHD1	100	97.973	ENSCSAG00000015339	CHD1	86	97.973	Chlorocebus_sabaeus
ENSSSCG00000014177	CHD1	63	88.507	ENSCPBG00000015831	CHD1	98	84.306	Chrysemys_picta_bellii
ENSSSCG00000014177	CHD1	100	95.740	ENSCANG00000036916	CHD1	86	95.745	Colobus_angolensis_palliatus
ENSSSCG00000014177	CHD1	100	96.479	ENSCGRG00001023943	Chd1	86	96.479	Cricetulus_griseus_chok1gshd
ENSSSCG00000014177	CHD1	100	96.479	ENSCGRG00000008652	Chd1	86	96.479	Cricetulus_griseus_crigri
ENSSSCG00000014177	CHD1	89	79.756	ENSCSEG00000009553	chd1	81	81.187	Cynoglossus_semilaevis
ENSSSCG00000014177	CHD1	95	97.716	ENSEASG00005016110	CHD1	99	97.716	Equus_asinus_asinus
ENSSSCG00000014177	CHD1	87	82.585	ENSELUG00000017677	chd1	79	82.855	Esox_lucius
ENSSSCG00000014177	CHD1	83	81.500	ENSFHEG00000021164	chd1	87	83.095	Fundulus_heteroclitus
ENSSSCG00000014177	CHD1	95	81.739	ENSGMOG00000001537	chd1	83	73.553	Gadus_morhua
ENSSSCG00000014177	CHD1	90	90.991	ENSGALG00000031327	-	81	91.291	Gallus_gallus
ENSSSCG00000014177	CHD1	93	82.371	ENSGAFG00000019880	chd1	88	83.103	Gambusia_affinis
ENSSSCG00000014177	CHD1	99	93.921	ENSGGOG00000011463	CHD1	86	93.921	Gorilla_gorilla
ENSSSCG00000014177	CHD1	87	82.815	ENSHCOG00000014222	chd1	77	84.375	Hippocampus_comes
ENSSSCG00000014177	CHD1	85	85.886	ENSIPUG00000001369	chd1	82	83.143	Ictalurus_punctatus
ENSSSCG00000014177	CHD1	72	95.238	ENSLAFG00000023183	CHD1	99	95.238	Loxodonta_africana
ENSSSCG00000014177	CHD1	100	97.973	ENSMFAG00000031226	CHD1	86	98.078	Macaca_fascicularis
ENSSSCG00000014177	CHD1	96	97.609	ENSMMUG00000014090	CHD1	99	97.609	Macaca_mulatta
ENSSSCG00000014177	CHD1	100	97.907	ENSMNEG00000045073	CHD1	86	98.078	Macaca_nemestrina
ENSSSCG00000014177	CHD1	99	93.548	ENSMLEG00000041096	CHD1	85	93.548	Mandrillus_leucophaeus
ENSSSCG00000014177	CHD1	84	81.532	ENSMZEG00005010957	chd1	93	81.335	Maylandia_zebra
ENSSSCG00000014177	CHD1	52	69.369	ENSMGAG00000008369	-	100	69.142	Meleagris_gallopavo
ENSSSCG00000014177	CHD1	100	93.636	ENSMOCG00000019121	Chd1	86	93.636	Microtus_ochrogaster
ENSSSCG00000014177	CHD1	52	95.795	ENSMODG00000019266	-	100	95.532	Monodelphis_domestica
ENSSSCG00000014177	CHD1	91	78.430	ENSMALG00000013317	chd1	95	77.753	Monopterus_albus
ENSSSCG00000014177	CHD1	100	96.209	MGP_CAROLIEiJ_G0021099	Chd1	99	96.756	Mus_caroli
ENSSSCG00000014177	CHD1	100	96.547	ENSMUSG00000023852	Chd1	99	96.942	Mus_musculus
ENSSSCG00000014177	CHD1	100	96.276	MGP_PahariEiJ_G0023414	Chd1	99	96.944	Mus_pahari
ENSSSCG00000014177	CHD1	87	80.623	ENSNBRG00000006860	chd1	80	80.435	Neolamprologus_brichardi
ENSSSCG00000014177	CHD1	98	97.922	ENSNLEG00000014493	CHD1	84	97.922	Nomascus_leucogenys
ENSSSCG00000014177	CHD1	100	93.572	ENSOANG00000004891	CHD1	86	93.911	Ornithorhynchus_anatinus
ENSSSCG00000014177	CHD1	68	78.937	ENSORLG00015016725	chd1	93	77.733	Oryzias_latipes_hsok
ENSSSCG00000014177	CHD1	99	96.322	ENSPPAG00000043367	CHD1	86	96.322	Pan_paniscus
ENSSSCG00000014177	CHD1	100	97.970	ENSPTRG00000017103	CHD1	86	97.970	Pan_troglodytes
ENSSSCG00000014177	CHD1	100	97.973	ENSPANG00000006387	CHD1	86	98.078	Papio_anubis
ENSSSCG00000014177	CHD1	87	80.530	ENSPKIG00000024719	chd1	77	80.374	Paramormyrops_kingsleyae
ENSSSCG00000014177	CHD1	100	96.685	ENSPEMG00000015939	Chd1	87	96.685	Peromyscus_maniculatus_bairdii
ENSSSCG00000014177	CHD1	57	78.318	ENSPLAG00000006473	-	85	78.121	Poecilia_latipinna
ENSSSCG00000014177	CHD1	96	78.466	ENSPREG00000004209	chd1	84	78.516	Poecilia_reticulata
ENSSSCG00000014177	CHD1	96	95.628	ENSRNOG00000014434	Chd1	99	95.698	Rattus_norvegicus
ENSSSCG00000014177	CHD1	100	94.936	ENSRBIG00000044325	CHD1	86	95.127	Rhinopithecus_bieti
ENSSSCG00000014177	CHD1	100	97.704	ENSRROG00000001726	CHD1	86	97.804	Rhinopithecus_roxellana
ENSSSCG00000014177	CHD1	83	83.184	ENSSFOG00015007161	chd1	90	83.252	Scleropages_formosus
ENSSSCG00000014177	CHD1	91	78.514	ENSSDUG00000018314	chd1	94	78.309	Seriola_dumerili
ENSSSCG00000014177	CHD1	60	84.055	ENSSLDG00000017244	chd1	88	84.055	Seriola_lalandi_dorsalis
ENSSSCG00000014177	CHD1	91	78.761	ENSSPAG00000007024	chd1	95	78.351	Stegastes_partitus
ENSSSCG00000014177	CHD1	88	79.403	ENSTRUG00000010282	chd1	83	76.295	Takifugu_rubripes
ENSSSCG00000014177	CHD1	83	78.023	ENSTNIG00000007101	chd1	95	77.969	Tetraodon_nigroviridis
ENSSSCG00000014177	CHD1	98	75.035	ENSXCOG00000017184	chd1	84	74.894	Xiphophorus_couchianus
ENSSSCG00000014177	CHD1	89	79.116	ENSXMAG00000014538	chd1	95	78.992	Xiphophorus_maculatus