EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000015233 (Gene tree)
Gene ID: 100514357
Gene Symbol: RPUSD4
Alias: -
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 8110 bases
Position: chr9:53301818-53309927
Accession: 100514357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000016154	PseudoU_synth_2	PF00849.22	1.6e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000016599	-	1936	-	ENSSSCP00000016154	376 (aa)	-	F1S6H1

Gene Model

Click here to download ENSSSCG00000015233's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000015233's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000015233	RPUSD4	72	32.292	ENSSSCG00000011555	RPUSD3	78	32.292

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000015233	RPUSD4	100	80.371	ENSG00000165526	RPUSD4	100	80.371	Homo_sapiens
ENSSSCG00000015233	RPUSD4	90	50.289	ENSAPOG00000011024	rpusd4	85	50.289	Acanthochromis_polyacanthus
ENSSSCG00000015233	RPUSD4	98	85.714	ENSAMEG00000000127	-	98	85.714	Ailuropoda_melanoleuca
ENSSSCG00000015233	RPUSD4	82	78.169	ENSAMEG00000005953	-	98	86.792	Ailuropoda_melanoleuca
ENSSSCG00000015233	RPUSD4	85	50.309	ENSACIG00000003533	rpusd4	95	50.309	Amphilophus_citrinellus
ENSSSCG00000015233	RPUSD4	89	50.289	ENSAOCG00000015409	rpusd4	86	50.289	Amphiprion_ocellaris
ENSSSCG00000015233	RPUSD4	89	50.578	ENSAPEG00000018935	rpusd4	86	50.578	Amphiprion_percula
ENSSSCG00000015233	RPUSD4	87	50.882	ENSATEG00000008059	rpusd4	84	50.882	Anabas_testudineus
ENSSSCG00000015233	RPUSD4	74	59.857	ENSAPLG00000013250	RPUSD4	99	58.983	Anas_platyrhynchos
ENSSSCG00000015233	RPUSD4	96	58.630	ENSACAG00000000189	RPUSD4	99	58.630	Anolis_carolinensis
ENSSSCG00000015233	RPUSD4	98	80.593	ENSANAG00000024050	RPUSD4	99	80.593	Aotus_nancymaae
ENSSSCG00000015233	RPUSD4	86	51.829	ENSACLG00000020996	rpusd4	84	51.829	Astatotilapia_calliptera
ENSSSCG00000015233	RPUSD4	90	50.581	ENSAMXG00000031479	rpusd4	94	51.343	Astyanax_mexicanus
ENSSSCG00000015233	RPUSD4	100	84.615	ENSBTAG00000020900	RPUSD4	100	84.615	Bos_taurus
ENSSSCG00000015233	RPUSD4	99	80.376	ENSCJAG00000042850	RPUSD4	94	80.376	Callithrix_jacchus
ENSSSCG00000015233	RPUSD4	99	82.353	ENSCAFG00000010488	RPUSD4	99	82.353	Canis_familiaris
ENSSSCG00000015233	RPUSD4	99	82.353	ENSCAFG00020010621	RPUSD4	99	82.353	Canis_lupus_dingo
ENSSSCG00000015233	RPUSD4	100	84.656	ENSCHIG00000009975	RPUSD4	100	84.656	Capra_hircus
ENSSSCG00000015233	RPUSD4	100	84.840	ENSTSYG00000008456	RPUSD4	100	84.840	Carlito_syrichta
ENSSSCG00000015233	RPUSD4	67	81.746	ENSCAPG00000006040	RPUSD4	98	81.746	Cavia_aperea
ENSSSCG00000015233	RPUSD4	98	81.622	ENSCPOG00000014971	RPUSD4	98	81.622	Cavia_porcellus
ENSSSCG00000015233	RPUSD4	98	80.593	ENSCCAG00000027838	RPUSD4	99	80.593	Cebus_capucinus
ENSSSCG00000015233	RPUSD4	100	81.167	ENSCATG00000041570	RPUSD4	100	81.167	Cercocebus_atys
ENSSSCG00000015233	RPUSD4	98	84.097	ENSCLAG00000016553	RPUSD4	98	84.097	Chinchilla_lanigera
ENSSSCG00000015233	RPUSD4	100	80.637	ENSCSAG00000002274	RPUSD4	100	80.637	Chlorocebus_sabaeus
ENSSSCG00000015233	RPUSD4	75	84.806	ENSCHOG00000010249	RPUSD4	100	84.806	Choloepus_hoffmanni
ENSSSCG00000015233	RPUSD4	76	66.434	ENSCPBG00000011175	RPUSD4	99	66.434	Chrysemys_picta_bellii
ENSSSCG00000015233	RPUSD4	73	42.756	ENSCSAVG00000000872	-	55	42.756	Ciona_savignyi
ENSSSCG00000015233	RPUSD4	100	79.310	ENSCANG00000039684	RPUSD4	100	79.310	Colobus_angolensis_palliatus
ENSSSCG00000015233	RPUSD4	98	81.132	ENSCGRG00001024141	Rpusd4	98	81.132	Cricetulus_griseus_chok1gshd
ENSSSCG00000015233	RPUSD4	98	81.132	ENSCGRG00000014415	Rpusd4	98	81.132	Cricetulus_griseus_crigri
ENSSSCG00000015233	RPUSD4	51	42.784	ENSCSEG00000006462	-	85	42.784	Cynoglossus_semilaevis
ENSSSCG00000015233	RPUSD4	88	49.258	ENSCVAG00000008761	rpusd4	86	49.258	Cyprinodon_variegatus
ENSSSCG00000015233	RPUSD4	88	49.555	ENSCVAG00000000392	rpusd4	95	49.555	Cyprinodon_variegatus
ENSSSCG00000015233	RPUSD4	90	48.547	ENSDARG00000012674	rpusd4	96	48.837	Danio_rerio
ENSSSCG00000015233	RPUSD4	100	78.780	ENSDNOG00000020026	RPUSD4	100	78.780	Dasypus_novemcinctus
ENSSSCG00000015233	RPUSD4	100	83.024	ENSDORG00000016717	Rpusd4	100	83.289	Dipodomys_ordii
ENSSSCG00000015233	RPUSD4	99	80.645	ENSETEG00000013953	RPUSD4	99	80.645	Echinops_telfairi
ENSSSCG00000015233	RPUSD4	100	86.207	ENSEASG00005022982	RPUSD4	100	86.207	Equus_asinus_asinus
ENSSSCG00000015233	RPUSD4	100	85.942	ENSECAG00000000557	RPUSD4	100	85.942	Equus_caballus
ENSSSCG00000015233	RPUSD4	81	83.069	ENSEEUG00000014036	RPUSD4	81	83.069	Erinaceus_europaeus
ENSSSCG00000015233	RPUSD4	92	52.909	ENSELUG00000008075	rpusd4	94	52.909	Esox_lucius
ENSSSCG00000015233	RPUSD4	99	84.450	ENSFCAG00000029789	RPUSD4	99	84.450	Felis_catus
ENSSSCG00000015233	RPUSD4	88	57.658	ENSFALG00000005171	RPUSD4	98	57.658	Ficedula_albicollis
ENSSSCG00000015233	RPUSD4	100	82.759	ENSFDAG00000014307	RPUSD4	100	82.759	Fukomys_damarensis
ENSSSCG00000015233	RPUSD4	90	48.870	ENSFHEG00000004329	rpusd4	91	48.870	Fundulus_heteroclitus
ENSSSCG00000015233	RPUSD4	85	51.077	ENSGMOG00000017726	rpusd4	96	51.077	Gadus_morhua
ENSSSCG00000015233	RPUSD4	93	55.028	ENSGALG00000024326	RPUSD4	99	55.586	Gallus_gallus
ENSSSCG00000015233	RPUSD4	85	47.692	ENSGAFG00000021559	rpusd4	82	47.692	Gambusia_affinis
ENSSSCG00000015233	RPUSD4	89	48.378	ENSGACG00000001657	rpusd4	99	50.000	Gasterosteus_aculeatus
ENSSSCG00000015233	RPUSD4	88	62.462	ENSGAGG00000000132	RPUSD4	92	62.462	Gopherus_agassizii
ENSSSCG00000015233	RPUSD4	100	80.106	ENSGGOG00000016494	RPUSD4	100	80.106	Gorilla_gorilla
ENSSSCG00000015233	RPUSD4	86	51.829	ENSHBUG00000022838	rpusd4	84	51.829	Haplochromis_burtoni
ENSSSCG00000015233	RPUSD4	100	81.698	ENSHGLG00000002285	RPUSD4	100	81.698	Heterocephalus_glaber_female
ENSSSCG00000015233	RPUSD4	100	81.698	ENSHGLG00100006385	RPUSD4	100	81.698	Heterocephalus_glaber_male
ENSSSCG00000015233	RPUSD4	88	49.405	ENSHCOG00000006612	rpusd4	85	49.405	Hippocampus_comes
ENSSSCG00000015233	RPUSD4	91	51.437	ENSIPUG00000023879	rusd4	90	51.437	Ictalurus_punctatus
ENSSSCG00000015233	RPUSD4	97	83.471	ENSSTOG00000025280	RPUSD4	100	83.471	Ictidomys_tridecemlineatus
ENSSSCG00000015233	RPUSD4	98	84.054	ENSJJAG00000018673	Rpusd4	99	84.054	Jaculus_jaculus
ENSSSCG00000015233	RPUSD4	94	49.862	ENSKMAG00000021805	rpusd4	94	49.862	Kryptolebias_marmoratus
ENSSSCG00000015233	RPUSD4	93	46.893	ENSLBEG00000020394	rpusd4	99	46.893	Labrus_bergylta
ENSSSCG00000015233	RPUSD4	85	61.300	ENSLACG00000011028	RPUSD4	85	60.119	Latimeria_chalumnae
ENSSSCG00000015233	RPUSD4	85	48.457	ENSLOCG00000003124	rpusd4	86	47.531	Lepisosteus_oculatus
ENSSSCG00000015233	RPUSD4	100	81.383	ENSLAFG00000005211	RPUSD4	100	81.383	Loxodonta_africana
ENSSSCG00000015233	RPUSD4	100	81.167	ENSMFAG00000039513	RPUSD4	100	81.167	Macaca_fascicularis
ENSSSCG00000015233	RPUSD4	100	80.902	ENSMMUG00000007933	RPUSD4	100	80.902	Macaca_mulatta
ENSSSCG00000015233	RPUSD4	100	80.902	ENSMNEG00000027414	RPUSD4	100	80.902	Macaca_nemestrina
ENSSSCG00000015233	RPUSD4	100	80.902	ENSMLEG00000042461	RPUSD4	100	80.902	Mandrillus_leucophaeus
ENSSSCG00000015233	RPUSD4	91	47.293	ENSMAMG00000023839	rpusd4	90	47.293	Mastacembelus_armatus
ENSSSCG00000015233	RPUSD4	86	51.829	ENSMZEG00005011999	rpusd4	84	51.829	Maylandia_zebra
ENSSSCG00000015233	RPUSD4	73	61.372	ENSMGAG00000000840	RPUSD4	99	58.567	Meleagris_gallopavo
ENSSSCG00000015233	RPUSD4	99	78.552	ENSMAUG00000010280	Rpusd4	99	78.552	Mesocricetus_auratus
ENSSSCG00000015233	RPUSD4	100	84.085	ENSMICG00000015979	RPUSD4	100	84.085	Microcebus_murinus
ENSSSCG00000015233	RPUSD4	98	77.628	ENSMOCG00000000661	Rpusd4	98	77.628	Microtus_ochrogaster
ENSSSCG00000015233	RPUSD4	78	55.705	ENSMMOG00000021731	rpusd4	88	55.705	Mola_mola
ENSSSCG00000015233	RPUSD4	87	75.229	ENSMODG00000004521	RPUSD4	84	75.229	Monodelphis_domestica
ENSSSCG00000015233	RPUSD4	80	51.466	ENSMALG00000005839	rpusd4	97	50.779	Monopterus_albus
ENSSSCG00000015233	RPUSD4	99	78.820	MGP_CAROLIEiJ_G0031954	Rpusd4	99	78.820	Mus_caroli
ENSSSCG00000015233	RPUSD4	99	78.820	ENSMUSG00000032044	Rpusd4	99	78.820	Mus_musculus
ENSSSCG00000015233	RPUSD4	99	79.625	MGP_PahariEiJ_G0014819	Rpusd4	99	79.625	Mus_pahari
ENSSSCG00000015233	RPUSD4	99	79.088	MGP_SPRETEiJ_G0033078	Rpusd4	99	79.088	Mus_spretus
ENSSSCG00000015233	RPUSD4	99	82.133	ENSMPUG00000006608	RPUSD4	99	82.133	Mustela_putorius_furo
ENSSSCG00000015233	RPUSD4	91	84.348	ENSMLUG00000017328	-	96	83.014	Myotis_lucifugus
ENSSSCG00000015233	RPUSD4	68	87.008	ENSMLUG00000029348	-	100	87.008	Myotis_lucifugus
ENSSSCG00000015233	RPUSD4	99	80.645	ENSNGAG00000020847	Rpusd4	99	80.645	Nannospalax_galili
ENSSSCG00000015233	RPUSD4	86	52.134	ENSNBRG00000005207	rpusd4	95	52.134	Neolamprologus_brichardi
ENSSSCG00000015233	RPUSD4	100	81.167	ENSNLEG00000007465	RPUSD4	100	81.167	Nomascus_leucogenys
ENSSSCG00000015233	RPUSD4	94	70.506	ENSMEUG00000004370	RPUSD4	99	68.649	Notamacropus_eugenii
ENSSSCG00000015233	RPUSD4	70	62.121	ENSOPRG00000013141	-	100	62.121	Ochotona_princeps
ENSSSCG00000015233	RPUSD4	98	82.749	ENSODEG00000004577	RPUSD4	98	82.749	Octodon_degus
ENSSSCG00000015233	RPUSD4	95	49.307	ENSONIG00000018879	rpusd4	96	49.307	Oreochromis_niloticus
ENSSSCG00000015233	RPUSD4	77	67.797	ENSOANG00000007247	RPUSD4	95	67.677	Ornithorhynchus_anatinus
ENSSSCG00000015233	RPUSD4	99	82.574	ENSOCUG00000017039	RPUSD4	99	82.574	Oryctolagus_cuniculus
ENSSSCG00000015233	RPUSD4	91	48.266	ENSORLG00000002750	rpusd4	94	48.547	Oryzias_latipes
ENSSSCG00000015233	RPUSD4	88	48.665	ENSORLG00020002044	rpusd4	83	48.665	Oryzias_latipes_hni
ENSSSCG00000015233	RPUSD4	88	48.214	ENSORLG00015020034	rpusd4	83	48.214	Oryzias_latipes_hsok
ENSSSCG00000015233	RPUSD4	88	50.746	ENSOMEG00000004861	rpusd4	82	50.746	Oryzias_melastigma
ENSSSCG00000015233	RPUSD4	100	82.804	ENSOGAG00000008922	RPUSD4	100	82.804	Otolemur_garnettii
ENSSSCG00000015233	RPUSD4	98	85.637	ENSOARG00000012238	RPUSD4	98	85.676	Ovis_aries
ENSSSCG00000015233	RPUSD4	100	80.637	ENSPPAG00000042883	RPUSD4	93	80.637	Pan_paniscus
ENSSSCG00000015233	RPUSD4	99	84.677	ENSPPRG00000003081	RPUSD4	98	84.906	Panthera_pardus
ENSSSCG00000015233	RPUSD4	99	84.677	ENSPTIG00000012059	RPUSD4	98	84.906	Panthera_tigris_altaica
ENSSSCG00000015233	RPUSD4	100	80.371	ENSPTRG00000004454	RPUSD4	100	80.371	Pan_troglodytes
ENSSSCG00000015233	RPUSD4	100	80.902	ENSPANG00000015040	RPUSD4	100	80.902	Papio_anubis
ENSSSCG00000015233	RPUSD4	87	57.704	ENSPKIG00000023986	rpusd4	85	57.704	Paramormyrops_kingsleyae
ENSSSCG00000015233	RPUSD4	79	64.667	ENSPSIG00000014268	RPUSD4	95	64.667	Pelodiscus_sinensis
ENSSSCG00000015233	RPUSD4	84	50.309	ENSPMGG00000002806	rpusd4	89	50.155	Periophthalmus_magnuspinnatus
ENSSSCG00000015233	RPUSD4	98	71.968	ENSPEMG00000000278	Rpusd4	98	71.968	Peromyscus_maniculatus_bairdii
ENSSSCG00000015233	RPUSD4	82	44.737	ENSPMAG00000008183	rpusd4	98	43.275	Petromyzon_marinus
ENSSSCG00000015233	RPUSD4	97	71.154	ENSPCIG00000010212	RPUSD4	100	71.154	Phascolarctos_cinereus
ENSSSCG00000015233	RPUSD4	89	48.127	ENSPFOG00000019030	rpusd4	90	48.127	Poecilia_formosa
ENSSSCG00000015233	RPUSD4	89	48.696	ENSPLAG00000016848	rpusd4	87	48.696	Poecilia_latipinna
ENSSSCG00000015233	RPUSD4	89	47.536	ENSPMEG00000017534	rpusd4	87	47.536	Poecilia_mexicana
ENSSSCG00000015233	RPUSD4	85	48.193	ENSPREG00000005689	rpusd4	85	48.193	Poecilia_reticulata
ENSSSCG00000015233	RPUSD4	100	81.432	ENSPPYG00000004043	RPUSD4	100	81.432	Pongo_abelii
ENSSSCG00000015233	RPUSD4	80	83.152	ENSPCAG00000000753	RPUSD4	81	83.152	Procavia_capensis
ENSSSCG00000015233	RPUSD4	98	77.628	ENSPCOG00000020694	RPUSD4	100	77.628	Propithecus_coquereli
ENSSSCG00000015233	RPUSD4	100	85.676	ENSPVAG00000000988	RPUSD4	100	85.676	Pteropus_vampyrus
ENSSSCG00000015233	RPUSD4	86	50.915	ENSPNYG00000009652	rpusd4	84	50.915	Pundamilia_nyererei
ENSSSCG00000015233	RPUSD4	87	53.172	ENSPNAG00000012264	rpusd4	87	53.172	Pygocentrus_nattereri
ENSSSCG00000015233	RPUSD4	99	80.161	ENSRNOG00000011567	Rpusd4	99	80.161	Rattus_norvegicus
ENSSSCG00000015233	RPUSD4	96	82.825	ENSRBIG00000034842	RPUSD4	100	80.902	Rhinopithecus_bieti
ENSSSCG00000015233	RPUSD4	96	82.825	ENSRROG00000039753	RPUSD4	100	80.902	Rhinopithecus_roxellana
ENSSSCG00000015233	RPUSD4	98	79.784	ENSSBOG00000030413	RPUSD4	99	79.784	Saimiri_boliviensis_boliviensis
ENSSSCG00000015233	RPUSD4	80	75.415	ENSSHAG00000008304	RPUSD4	99	75.415	Sarcophilus_harrisii
ENSSSCG00000015233	RPUSD4	88	55.786	ENSSFOG00015006203	rpusd4	91	56.380	Scleropages_formosus
ENSSSCG00000015233	RPUSD4	90	50.000	ENSSMAG00000020978	rpusd4	88	50.746	Scophthalmus_maximus
ENSSSCG00000015233	RPUSD4	84	48.758	ENSSDUG00000013399	rpusd4	84	48.758	Seriola_dumerili
ENSSSCG00000015233	RPUSD4	84	49.068	ENSSLDG00000023507	rpusd4	84	49.068	Seriola_lalandi_dorsalis
ENSSSCG00000015233	RPUSD4	89	60.000	ENSSPUG00000001401	RPUSD4	94	60.588	Sphenodon_punctatus
ENSSSCG00000015233	RPUSD4	94	50.131	ENSSPAG00000012163	rpusd4	97	50.131	Stegastes_partitus
ENSSSCG00000015233	RPUSD4	79	58.667	ENSTGUG00000000773	RPUSD4	100	58.667	Taeniopygia_guttata
ENSSSCG00000015233	RPUSD4	86	50.152	ENSTRUG00000012283	rpusd4	84	50.152	Takifugu_rubripes
ENSSSCG00000015233	RPUSD4	83	51.402	ENSTNIG00000014676	rpusd4	82	51.402	Tetraodon_nigroviridis
ENSSSCG00000015233	RPUSD4	100	87.766	ENSTTRG00000001555	RPUSD4	100	87.766	Tursiops_truncatus
ENSSSCG00000015233	RPUSD4	98	85.714	ENSUMAG00000002219	RPUSD4	98	85.714	Ursus_maritimus
ENSSSCG00000015233	RPUSD4	70	86.742	ENSVPAG00000001066	RPUSD4	100	86.742	Vicugna_pacos
ENSSSCG00000015233	RPUSD4	99	82.086	ENSVVUG00000020101	RPUSD4	99	82.086	Vulpes_vulpes
ENSSSCG00000015233	RPUSD4	85	49.538	ENSXCOG00000004676	rpusd4	85	49.231	Xiphophorus_couchianus
ENSSSCG00000015233	RPUSD4	95	46.154	ENSXMAG00000023351	rpusd4	96	46.154	Xiphophorus_maculatus