EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000015498 (Gene tree)
Gene ID: 100519792
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 85122 bases
Position: chr9:116208794-116293915
Accession: 100519792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000016433	zf-CCCH	PF00642.24	0.00031	1	1
ENSSSCP00000038881	zf-CCCH	PF00642.24	0.00033	1	1
ENSSSCP00000041873	zf-CCCH	PF00642.24	0.00033	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000054568	RC3H1-202	6557	XM_003357546	ENSSSCP00000041873	1132 (aa)	XP_003357594	A0A287AD26
ENSSSCT00000016884	RC3H1-203	4022	-	ENSSSCP00000016433	1075 (aa)	-	F1S727
ENSSSCT00000041796	RC3H1-201	6564	XM_005656721	ENSSSCP00000038881	1123 (aa)	XP_005656778	A0A287A513

Gene Model

Click here to download ENSSSCG00000015498's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000015498's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000015498	RC3H1	98	52.542	ENSSSCG00000005575	RC3H2	92	83.002

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000015498	RC3H1	100	97.529	ENSG00000135870	RC3H1	100	97.529	Homo_sapiens
ENSSSCG00000015498	RC3H1	100	96.820	ENSAMEG00000015657	RC3H1	100	96.820	Ailuropoda_melanoleuca
ENSSSCG00000015498	RC3H1	100	88.394	ENSAPLG00000005341	RC3H1	100	87.860	Anas_platyrhynchos
ENSSSCG00000015498	RC3H1	100	85.677	ENSACAG00000015271	RC3H1	100	85.302	Anolis_carolinensis
ENSSSCG00000015498	RC3H1	100	97.440	ENSANAG00000036716	RC3H1	100	97.440	Aotus_nancymaae
ENSSSCG00000015498	RC3H1	100	96.797	ENSBTAG00000052708	RC3H1	100	96.797	Bos_taurus
ENSSSCG00000015498	RC3H1	100	97.087	ENSCJAG00000009106	RC3H1	100	97.087	Callithrix_jacchus
ENSSSCG00000015498	RC3H1	100	97.085	ENSCAFG00000014434	RC3H1	100	97.085	Canis_familiaris
ENSSSCG00000015498	RC3H1	100	96.999	ENSCAFG00020017112	RC3H1	99	98.202	Canis_lupus_dingo
ENSSSCG00000015498	RC3H1	100	97.150	ENSCHIG00000002873	RC3H1	100	97.150	Capra_hircus
ENSSSCG00000015498	RC3H1	99	95.406	ENSTSYG00000003913	RC3H1	99	95.406	Carlito_syrichta
ENSSSCG00000015498	RC3H1	100	91.880	ENSCPOG00000004349	RC3H1	100	91.615	Cavia_porcellus
ENSSSCG00000015498	RC3H1	100	94.969	ENSCCAG00000025652	RC3H1	100	95.057	Cebus_capucinus
ENSSSCG00000015498	RC3H1	100	97.529	ENSCATG00000033497	RC3H1	100	97.529	Cercocebus_atys
ENSSSCG00000015498	RC3H1	100	95.146	ENSCLAG00000011267	RC3H1	100	95.146	Chinchilla_lanigera
ENSSSCG00000015498	RC3H1	96	97.330	ENSCSAG00000011823	RC3H1	85	97.330	Chlorocebus_sabaeus
ENSSSCG00000015498	RC3H1	100	90.481	ENSCPBG00000014670	RC3H1	100	96.304	Chrysemys_picta_bellii
ENSSSCG00000015498	RC3H1	100	97.531	ENSCANG00000032120	RC3H1	100	97.531	Colobus_angolensis_palliatus
ENSSSCG00000015498	RC3H1	100	94.965	ENSCGRG00001020812	Rc3h1	100	94.523	Cricetulus_griseus_chok1gshd
ENSSSCG00000015498	RC3H1	100	94.965	ENSCGRG00000011952	Rc3h1	100	94.523	Cricetulus_griseus_crigri
ENSSSCG00000015498	RC3H1	58	95.323	ENSDNOG00000011494	RC3H1	99	95.323	Dasypus_novemcinctus
ENSSSCG00000015498	RC3H1	100	95.760	ENSDORG00000004855	Rc3h1	100	95.760	Dipodomys_ordii
ENSSSCG00000015498	RC3H1	86	96.168	ENSETEG00000012064	RC3H1	87	96.168	Echinops_telfairi
ENSSSCG00000015498	RC3H1	100	96.616	ENSEASG00005017000	RC3H1	100	96.616	Equus_asinus_asinus
ENSSSCG00000015498	RC3H1	100	96.438	ENSECAG00000021208	RC3H1	100	96.438	Equus_caballus
ENSSSCG00000015498	RC3H1	83	97.059	ENSEEUG00000014861	RC3H1	93	83.302	Erinaceus_europaeus
ENSSSCG00000015498	RC3H1	100	97.440	ENSFCAG00000014924	RC3H1	100	97.440	Felis_catus
ENSSSCG00000015498	RC3H1	100	87.675	ENSFALG00000002947	RC3H1	100	86.527	Ficedula_albicollis
ENSSSCG00000015498	RC3H1	100	95.146	ENSFDAG00000013303	RC3H1	100	95.146	Fukomys_damarensis
ENSSSCG00000015498	RC3H1	100	88.240	ENSGALG00000004587	RC3H1	100	87.699	Gallus_gallus
ENSSSCG00000015498	RC3H1	100	89.279	ENSGAGG00000018194	RC3H1	100	89.187	Gopherus_agassizii
ENSSSCG00000015498	RC3H1	100	90.589	ENSGGOG00000005735	RC3H1	100	90.589	Gorilla_gorilla
ENSSSCG00000015498	RC3H1	88	89.175	ENSHGLG00000004183	-	99	89.130	Heterocephalus_glaber_female
ENSSSCG00000015498	RC3H1	100	94.881	ENSHGLG00100008577	RC3H1	100	94.881	Heterocephalus_glaber_male
ENSSSCG00000015498	RC3H1	100	96.734	ENSSTOG00000016033	RC3H1	100	96.734	Ictidomys_tridecemlineatus
ENSSSCG00000015498	RC3H1	100	95.053	ENSJJAG00000018915	Rc3h1	100	94.876	Jaculus_jaculus
ENSSSCG00000015498	RC3H1	100	75.261	ENSLACG00000016186	RC3H1	100	78.069	Latimeria_chalumnae
ENSSSCG00000015498	RC3H1	97	97.174	ENSLAFG00000004367	RC3H1	100	97.174	Loxodonta_africana
ENSSSCG00000015498	RC3H1	100	97.440	ENSMFAG00000033725	RC3H1	100	97.440	Macaca_fascicularis
ENSSSCG00000015498	RC3H1	100	97.529	ENSMMUG00000000630	RC3H1	100	97.529	Macaca_mulatta
ENSSSCG00000015498	RC3H1	100	97.529	ENSMNEG00000035968	RC3H1	100	97.529	Macaca_nemestrina
ENSSSCG00000015498	RC3H1	100	97.440	ENSMLEG00000037455	RC3H1	100	97.440	Mandrillus_leucophaeus
ENSSSCG00000015498	RC3H1	100	92.093	ENSMAUG00000020864	Rc3h1	100	91.628	Mesocricetus_auratus
ENSSSCG00000015498	RC3H1	100	97.261	ENSMICG00000003000	RC3H1	100	97.261	Microcebus_murinus
ENSSSCG00000015498	RC3H1	93	93.555	ENSMOCG00000016587	Rc3h1	98	93.175	Microtus_ochrogaster
ENSSSCG00000015498	RC3H1	100	92.416	ENSMODG00000004289	RC3H1	100	92.504	Monodelphis_domestica
ENSSSCG00000015498	RC3H1	100	94.170	MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.728	Mus_caroli
ENSSSCG00000015498	RC3H1	100	93.993	ENSMUSG00000040423	Rc3h1	100	93.551	Mus_musculus
ENSSSCG00000015498	RC3H1	100	93.993	MGP_PahariEiJ_G0027992	Rc3h1	100	93.551	Mus_pahari
ENSSSCG00000015498	RC3H1	100	93.816	MGP_SPRETEiJ_G0015563	Rc3h1	100	93.375	Mus_spretus
ENSSSCG00000015498	RC3H1	100	96.734	ENSMPUG00000004747	RC3H1	100	96.734	Mustela_putorius_furo
ENSSSCG00000015498	RC3H1	100	95.671	ENSMLUG00000011127	RC3H1	100	95.671	Myotis_lucifugus
ENSSSCG00000015498	RC3H1	100	96.025	ENSNGAG00000011135	Rc3h1	100	95.583	Nannospalax_galili
ENSSSCG00000015498	RC3H1	100	97.793	ENSNLEG00000015327	RC3H1	100	97.793	Nomascus_leucogenys
ENSSSCG00000015498	RC3H1	99	83.289	ENSOPRG00000013068	RC3H1	99	83.363	Ochotona_princeps
ENSSSCG00000015498	RC3H1	100	94.793	ENSODEG00000014185	RC3H1	100	94.793	Octodon_degus
ENSSSCG00000015498	RC3H1	100	91.266	ENSOANG00000000924	RC3H1	100	91.354	Ornithorhynchus_anatinus
ENSSSCG00000015498	RC3H1	99	96.416	ENSOCUG00000004930	RC3H1	98	96.416	Oryctolagus_cuniculus
ENSSSCG00000015498	RC3H1	100	90.123	ENSOGAG00000004044	RC3H1	100	90.123	Otolemur_garnettii
ENSSSCG00000015498	RC3H1	100	96.491	ENSOARG00000013011	RC3H1	100	96.491	Ovis_aries
ENSSSCG00000015498	RC3H1	100	97.531	ENSPPAG00000039253	RC3H1	100	97.531	Pan_paniscus
ENSSSCG00000015498	RC3H1	100	97.685	ENSPPRG00000009007	RC3H1	100	97.685	Panthera_pardus
ENSSSCG00000015498	RC3H1	100	97.274	ENSPTIG00000015326	RC3H1	100	97.274	Panthera_tigris_altaica
ENSSSCG00000015498	RC3H1	100	97.531	ENSPTRG00000001702	RC3H1	100	97.531	Pan_troglodytes
ENSSSCG00000015498	RC3H1	100	97.440	ENSPANG00000008886	RC3H1	100	97.440	Papio_anubis
ENSSSCG00000015498	RC3H1	100	90.363	ENSPSIG00000016181	RC3H1	100	90.274	Pelodiscus_sinensis
ENSSSCG00000015498	RC3H1	100	94.170	ENSPEMG00000011966	Rc3h1	100	93.640	Peromyscus_maniculatus_bairdii
ENSSSCG00000015498	RC3H1	75	93.009	ENSPCIG00000002058	RC3H1	95	98.430	Phascolarctos_cinereus
ENSSSCG00000015498	RC3H1	100	94.086	ENSPPYG00000000490	RC3H1	98	97.297	Pongo_abelii
ENSSSCG00000015498	RC3H1	81	100.000	ENSPCAG00000010775	RC3H1	87	100.000	Procavia_capensis
ENSSSCG00000015498	RC3H1	83	97.112	ENSPCOG00000021795	RC3H1	96	97.112	Propithecus_coquereli
ENSSSCG00000015498	RC3H1	94	100.000	ENSPVAG00000007593	RC3H1	100	88.428	Pteropus_vampyrus
ENSSSCG00000015498	RC3H1	97	62.167	ENSPNAG00000023439	rc3h1a	95	90.991	Pygocentrus_nattereri
ENSSSCG00000015498	RC3H1	100	97.443	ENSRBIG00000037743	RC3H1	100	97.443	Rhinopithecus_bieti
ENSSSCG00000015498	RC3H1	100	97.352	ENSRROG00000036546	RC3H1	100	97.352	Rhinopithecus_roxellana
ENSSSCG00000015498	RC3H1	93	96.597	ENSSBOG00000010664	RC3H1	100	96.597	Saimiri_boliviensis_boliviensis
ENSSSCG00000015498	RC3H1	100	91.366	ENSSHAG00000007589	RC3H1	100	91.454	Sarcophilus_harrisii
ENSSSCG00000015498	RC3H1	87	86.712	ENSSARG00000004660	RC3H1	86	86.712	Sorex_araneus
ENSSSCG00000015498	RC3H1	100	84.838	ENSSPUG00000018472	RC3H1	100	84.211	Sphenodon_punctatus
ENSSSCG00000015498	RC3H1	100	88.235	ENSTGUG00000004090	RC3H1	100	87.522	Taeniopygia_guttata
ENSSSCG00000015498	RC3H1	90	96.594	ENSTBEG00000005015	RC3H1	93	91.724	Tupaia_belangeri
ENSSSCG00000015498	RC3H1	100	96.828	ENSTTRG00000008572	RC3H1	100	96.828	Tursiops_truncatus
ENSSSCG00000015498	RC3H1	100	96.378	ENSUAMG00000019525	RC3H1	100	96.378	Ursus_americanus
ENSSSCG00000015498	RC3H1	100	96.911	ENSUMAG00000020087	RC3H1	100	96.911	Ursus_maritimus
ENSSSCG00000015498	RC3H1	91	98.649	ENSVPAG00000002591	RC3H1	92	98.649	Vicugna_pacos
ENSSSCG00000015498	RC3H1	100	96.743	ENSVVUG00000014201	RC3H1	100	96.743	Vulpes_vulpes
ENSSSCG00000015498	RC3H1	100	79.112	ENSXETG00000020030	rc3h1	100	78.484	Xenopus_tropicalis