EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000015558 (Gene tree)
Gene ID: 100515500
Gene Symbol: SMG7
Alias: C1orf16|EST1C|KIAA0250|SGA56M|SMG-7
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 79312 bases
Position: chr9:124696426-124775737
Accession: 100515500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000050594	EST1	PF10374.9	1.1e-24	1	1
ENSSSCP00000016494	EST1	PF10374.9	1.1e-24	1	1
ENSSSCP00000050460	EST1	PF10374.9	1.1e-24	1	1
ENSSSCP00000024216	EST1	PF10374.9	1.2e-24	1	1
ENSSSCP00000050594	EST1_DNA_bind	PF10373.9	2.6e-55	1	1
ENSSSCP00000016494	EST1_DNA_bind	PF10373.9	2.7e-55	1	1
ENSSSCP00000050460	EST1_DNA_bind	PF10373.9	2.8e-55	1	1
ENSSSCP00000024216	EST1_DNA_bind	PF10373.9	3e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000048611	SMG7-201	6766	XM_021063791	ENSSSCP00000050594	1091 (aa)	XP_020919450	A0A287B3B8
ENSSSCT00000053586	SMG7-202	6375	XM_021063786	ENSSSCP00000050460	1141 (aa)	XP_020919445	A0A287B230
ENSSSCT00000016948	SMG7-203	6227	XM_005667816	ENSSSCP00000016494	1120 (aa)	XP_005667873	F1S660
ENSSSCT00000026288	SMG7-204	5995	XM_003357575	ENSSSCP00000024216	1170 (aa)	XP_003357623	I3LJF6

Gene Model

Click here to download ENSSSCG00000015558's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000015558's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000015558	SMG7	100	97.525	ENSG00000116698	SMG7	100	98.148	Homo_sapiens
ENSSSCG00000015558	SMG7	89	71.557	ENSAPOG00000009611	smg7	95	72.163	Acanthochromis_polyacanthus
ENSSSCG00000015558	SMG7	99	93.800	ENSAMEG00000002357	SMG7	100	93.886	Ailuropoda_melanoleuca
ENSSSCG00000015558	SMG7	97	63.271	ENSACIG00000015152	smg7	100	63.693	Amphilophus_citrinellus
ENSSSCG00000015558	SMG7	99	65.292	ENSAOCG00000013538	smg7	99	65.550	Amphiprion_ocellaris
ENSSSCG00000015558	SMG7	99	65.150	ENSAPEG00000007851	smg7	99	65.408	Amphiprion_percula
ENSSSCG00000015558	SMG7	99	64.761	ENSATEG00000006931	smg7	99	65.068	Anabas_testudineus
ENSSSCG00000015558	SMG7	100	85.477	ENSAPLG00000015811	SMG7	100	85.302	Anas_platyrhynchos
ENSSSCG00000015558	SMG7	100	84.043	ENSACAG00000014989	SMG7	100	84.043	Anolis_carolinensis
ENSSSCG00000015558	SMG7	97	97.101	ENSANAG00000028114	SMG7	100	93.429	Aotus_nancymaae
ENSSSCG00000015558	SMG7	99	64.334	ENSACLG00000022079	smg7	99	64.944	Astatotilapia_calliptera
ENSSSCG00000015558	SMG7	99	67.197	ENSAMXG00000020809	smg7	99	67.475	Astyanax_mexicanus
ENSSSCG00000015558	SMG7	100	97.265	ENSBTAG00000008003	SMG7	100	97.265	Bos_taurus
ENSSSCG00000015558	SMG7	99	97.087	ENSCJAG00000005135	SMG7	100	97.084	Callithrix_jacchus
ENSSSCG00000015558	SMG7	100	97.949	ENSCAFG00000013276	SMG7	100	97.949	Canis_familiaris
ENSSSCG00000015558	SMG7	100	97.949	ENSCAFG00020015475	SMG7	100	97.949	Canis_lupus_dingo
ENSSSCG00000015558	SMG7	99	97.178	ENSCHIG00000018192	SMG7	99	97.264	Capra_hircus
ENSSSCG00000015558	SMG7	100	96.581	ENSTSYG00000002667	SMG7	100	96.581	Carlito_syrichta
ENSSSCG00000015558	SMG7	99	97.087	ENSCPOG00000008906	SMG7	100	97.084	Cavia_porcellus
ENSSSCG00000015558	SMG7	100	93.404	ENSCCAG00000028596	SMG7	100	93.404	Cebus_capucinus
ENSSSCG00000015558	SMG7	100	97.521	ENSCATG00000011063	SMG7	100	97.521	Cercocebus_atys
ENSSSCG00000015558	SMG7	100	96.845	ENSCLAG00000010751	SMG7	100	96.845	Chinchilla_lanigera
ENSSSCG00000015558	SMG7	100	97.521	ENSCSAG00000012654	SMG7	100	97.521	Chlorocebus_sabaeus
ENSSSCG00000015558	SMG7	92	88.634	ENSCHOG00000010522	SMG7	93	89.016	Choloepus_hoffmanni
ENSSSCG00000015558	SMG7	100	88.571	ENSCPBG00000015724	SMG7	100	88.403	Chrysemys_picta_bellii
ENSSSCG00000015558	SMG7	99	93.617	ENSCANG00000015680	SMG7	100	93.624	Colobus_angolensis_palliatus
ENSSSCG00000015558	SMG7	100	95.706	ENSCGRG00001013705	Smg7	100	95.706	Cricetulus_griseus_chok1gshd
ENSSSCG00000015558	SMG7	99	95.587	ENSCGRG00000018401	Smg7	100	95.648	Cricetulus_griseus_crigri
ENSSSCG00000015558	SMG7	92	70.000	ENSCVAG00000011842	smg7	100	69.500	Cyprinodon_variegatus
ENSSSCG00000015558	SMG7	99	66.722	ENSDARG00000060767	smg7	99	66.805	Danio_rerio
ENSSSCG00000015558	SMG7	100	96.407	ENSDORG00000007331	Smg7	100	96.407	Dipodomys_ordii
ENSSSCG00000015558	SMG7	97	95.743	ENSETEG00000002654	SMG7	100	95.743	Echinops_telfairi
ENSSSCG00000015558	SMG7	100	98.335	ENSEASG00005006524	SMG7	100	98.335	Equus_asinus_asinus
ENSSSCG00000015558	SMG7	100	98.422	ENSECAG00000004313	SMG7	100	98.422	Equus_caballus
ENSSSCG00000015558	SMG7	97	96.199	ENSEEUG00000002024	SMG7	94	96.199	Erinaceus_europaeus
ENSSSCG00000015558	SMG7	92	77.172	ENSELUG00000010293	smg7	99	66.060	Esox_lucius
ENSSSCG00000015558	SMG7	100	98.072	ENSFCAG00000010900	SMG7	100	98.504	Felis_catus
ENSSSCG00000015558	SMG7	98	83.248	ENSFALG00000003047	SMG7	100	83.163	Ficedula_albicollis
ENSSSCG00000015558	SMG7	99	96.400	ENSFDAG00000012121	SMG7	99	96.791	Fukomys_damarensis
ENSSSCG00000015558	SMG7	99	63.417	ENSFHEG00000011073	smg7	99	62.789	Fundulus_heteroclitus
ENSSSCG00000015558	SMG7	89	68.175	ENSGMOG00000004916	smg7	92	68.175	Gadus_morhua
ENSSSCG00000015558	SMG7	100	85.927	ENSGALG00000004667	SMG7	100	85.752	Gallus_gallus
ENSSSCG00000015558	SMG7	99	63.345	ENSGAFG00000019000	smg7	99	63.172	Gambusia_affinis
ENSSSCG00000015558	SMG7	97	65.122	ENSGACG00000001634	smg7	99	65.153	Gasterosteus_aculeatus
ENSSSCG00000015558	SMG7	100	97.265	ENSGGOG00000002342	SMG7	100	97.265	Gorilla_gorilla
ENSSSCG00000015558	SMG7	99	64.905	ENSHBUG00000003726	smg7	97	73.096	Haplochromis_burtoni
ENSSSCG00000015558	SMG7	98	96.881	ENSHGLG00000009353	SMG7	100	96.881	Heterocephalus_glaber_female
ENSSSCG00000015558	SMG7	98	95.187	ENSHGLG00100009637	-	100	95.187	Heterocephalus_glaber_male
ENSSSCG00000015558	SMG7	100	89.045	ENSHGLG00100004878	-	100	89.045	Heterocephalus_glaber_male
ENSSSCG00000015558	SMG7	99	67.842	ENSIPUG00000016997	smg7	99	68.010	Ictalurus_punctatus
ENSSSCG00000015558	SMG7	100	97.458	ENSSTOG00000000401	SMG7	100	97.458	Ictidomys_tridecemlineatus
ENSSSCG00000015558	SMG7	100	95.267	ENSJJAG00000012351	Smg7	100	95.267	Jaculus_jaculus
ENSSSCG00000015558	SMG7	97	61.199	ENSKMAG00000004900	smg7	100	61.464	Kryptolebias_marmoratus
ENSSSCG00000015558	SMG7	50	64.448	ENSLBEG00000005220	-	75	64.448	Labrus_bergylta
ENSSSCG00000015558	SMG7	99	65.598	ENSLBEG00000002983	smg7	99	65.511	Labrus_bergylta
ENSSSCG00000015558	SMG7	99	75.477	ENSLACG00000000972	SMG7	99	75.673	Latimeria_chalumnae
ENSSSCG00000015558	SMG7	99	67.137	ENSLOCG00000002010	smg7	99	67.559	Lepisosteus_oculatus
ENSSSCG00000015558	SMG7	99	97.085	ENSLAFG00000008186	SMG7	100	97.128	Loxodonta_africana
ENSSSCG00000015558	SMG7	100	97.634	ENSMFAG00000031653	SMG7	100	97.634	Macaca_fascicularis
ENSSSCG00000015558	SMG7	100	97.521	ENSMMUG00000018458	SMG7	100	97.521	Macaca_mulatta
ENSSSCG00000015558	SMG7	100	93.755	ENSMNEG00000034798	SMG7	100	93.755	Macaca_nemestrina
ENSSSCG00000015558	SMG7	100	97.521	ENSMLEG00000037170	SMG7	100	97.521	Mandrillus_leucophaeus
ENSSSCG00000015558	SMG7	88	63.822	ENSMAMG00000018733	smg7	84	65.171	Mastacembelus_armatus
ENSSSCG00000015558	SMG7	99	64.807	ENSMZEG00005015247	smg7	99	64.944	Maylandia_zebra
ENSSSCG00000015558	SMG7	97	85.624	ENSMGAG00000001561	SMG7	98	85.445	Meleagris_gallopavo
ENSSSCG00000015558	SMG7	100	96.144	ENSMAUG00000019484	Smg7	100	96.144	Mesocricetus_auratus
ENSSSCG00000015558	SMG7	99	97.529	ENSMICG00000007145	SMG7	100	97.650	Microcebus_murinus
ENSSSCG00000015558	SMG7	100	95.968	ENSMOCG00000020748	Smg7	100	95.968	Microtus_ochrogaster
ENSSSCG00000015558	SMG7	99	63.368	ENSMMOG00000001524	smg7	99	63.446	Mola_mola
ENSSSCG00000015558	SMG7	92	89.184	ENSMODG00000007139	SMG7	99	89.238	Monodelphis_domestica
ENSSSCG00000015558	SMG7	96	69.652	ENSMALG00000000061	smg7	94	69.652	Monopterus_albus
ENSSSCG00000015558	SMG7	100	95.706	MGP_CAROLIEiJ_G0014704	Smg7	100	95.355	Mus_caroli
ENSSSCG00000015558	SMG7	100	95.618	ENSMUSG00000042772	Smg7	100	95.618	Mus_musculus
ENSSSCG00000015558	SMG7	100	95.706	MGP_PahariEiJ_G0027940	Smg7	100	95.706	Mus_pahari
ENSSSCG00000015558	SMG7	100	95.706	MGP_SPRETEiJ_G0015511	Smg7	100	95.706	Mus_spretus
ENSSSCG00000015558	SMG7	98	98.039	ENSMPUG00000011732	SMG7	97	98.039	Mustela_putorius_furo
ENSSSCG00000015558	SMG7	99	97.352	ENSMLUG00000015417	SMG7	99	97.352	Myotis_lucifugus
ENSSSCG00000015558	SMG7	99	96.028	ENSNGAG00000009836	Smg7	100	95.997	Nannospalax_galili
ENSSSCG00000015558	SMG7	98	60.349	ENSNBRG00000024343	smg7	98	70.952	Neolamprologus_brichardi
ENSSSCG00000015558	SMG7	100	97.607	ENSNLEG00000018018	SMG7	100	97.607	Nomascus_leucogenys
ENSSSCG00000015558	SMG7	77	86.139	ENSMEUG00000004681	SMG7	77	86.332	Notamacropus_eugenii
ENSSSCG00000015558	SMG7	96	85.114	ENSOPRG00000013942	SMG7	96	84.840	Ochotona_princeps
ENSSSCG00000015558	SMG7	100	96.845	ENSODEG00000010390	SMG7	100	96.845	Octodon_degus
ENSSSCG00000015558	SMG7	99	63.946	ENSONIG00000000277	smg7	99	64.549	Oreochromis_niloticus
ENSSSCG00000015558	SMG7	98	90.869	ENSOANG00000000994	SMG7	100	91.135	Ornithorhynchus_anatinus
ENSSSCG00000015558	SMG7	100	89.573	ENSOCUG00000005887	SMG7	95	89.744	Oryctolagus_cuniculus
ENSSSCG00000015558	SMG7	99	61.885	ENSORLG00000007314	smg7	70	92.763	Oryzias_latipes
ENSSSCG00000015558	SMG7	99	62.228	ENSORLG00020015779	smg7	70	92.763	Oryzias_latipes_hni
ENSSSCG00000015558	SMG7	99	64.599	ENSORLG00015012289	smg7	99	62.760	Oryzias_latipes_hsok
ENSSSCG00000015558	SMG7	99	62.760	ENSOMEG00000002328	smg7	99	62.843	Oryzias_melastigma
ENSSSCG00000015558	SMG7	97	95.467	ENSOGAG00000003107	SMG7	94	94.923	Otolemur_garnettii
ENSSSCG00000015558	SMG7	100	97.094	ENSOARG00000001352	SMG7	100	97.094	Ovis_aries
ENSSSCG00000015558	SMG7	100	93.755	ENSPPAG00000031619	SMG7	100	93.755	Pan_paniscus
ENSSSCG00000015558	SMG7	99	98.147	ENSPPRG00000011222	SMG7	100	98.118	Panthera_pardus
ENSSSCG00000015558	SMG7	96	98.086	ENSPTIG00000007242	SMG7	100	94.236	Panthera_tigris_altaica
ENSSSCG00000015558	SMG7	97	97.645	ENSPTRG00000001764	SMG7	100	93.755	Pan_troglodytes
ENSSSCG00000015558	SMG7	100	97.521	ENSPANG00000004520	SMG7	100	97.521	Papio_anubis
ENSSSCG00000015558	SMG7	99	64.003	ENSPKIG00000007242	smg7	99	69.000	Paramormyrops_kingsleyae
ENSSSCG00000015558	SMG7	99	91.615	ENSPSIG00000012201	SMG7	99	90.909	Pelodiscus_sinensis
ENSSSCG00000015558	SMG7	55	57.653	ENSPMGG00000021833	smg7	89	57.000	Periophthalmus_magnuspinnatus
ENSSSCG00000015558	SMG7	100	94.917	ENSPEMG00000011315	Smg7	100	94.917	Peromyscus_maniculatus_bairdii
ENSSSCG00000015558	SMG7	100	89.983	ENSPCIG00000003786	SMG7	100	90.404	Phascolarctos_cinereus
ENSSSCG00000015558	SMG7	99	63.154	ENSPFOG00000019219	smg7	99	63.154	Poecilia_formosa
ENSSSCG00000015558	SMG7	99	63.463	ENSPLAG00000001446	smg7	99	63.377	Poecilia_latipinna
ENSSSCG00000015558	SMG7	96	62.701	ENSPMEG00000005218	smg7	99	62.612	Poecilia_mexicana
ENSSSCG00000015558	SMG7	87	60.152	ENSPREG00000019039	smg7	92	59.924	Poecilia_reticulata
ENSSSCG00000015558	SMG7	100	93.843	ENSPPYG00000000427	SMG7	100	93.843	Pongo_abelii
ENSSSCG00000015558	SMG7	95	85.240	ENSPCAG00000008360	SMG7	94	85.240	Procavia_capensis
ENSSSCG00000015558	SMG7	100	97.800	ENSPCOG00000011996	SMG7	100	97.800	Propithecus_coquereli
ENSSSCG00000015558	SMG7	92	92.065	ENSPVAG00000000851	SMG7	89	92.404	Pteropus_vampyrus
ENSSSCG00000015558	SMG7	99	64.797	ENSPNYG00000007643	smg7	99	64.711	Pundamilia_nyererei
ENSSSCG00000015558	SMG7	99	67.537	ENSPNAG00000011374	smg7	98	70.707	Pygocentrus_nattereri
ENSSSCG00000015558	SMG7	100	95.709	ENSRNOG00000027962	Smg7	100	96.561	Rattus_norvegicus
ENSSSCG00000015558	SMG7	100	97.436	ENSRBIG00000036316	SMG7	100	97.436	Rhinopithecus_bieti
ENSSSCG00000015558	SMG7	100	97.634	ENSRROG00000035719	SMG7	100	97.634	Rhinopithecus_roxellana
ENSSSCG00000015558	SMG7	100	97.371	ENSSBOG00000023454	SMG7	100	97.371	Saimiri_boliviensis_boliviensis
ENSSSCG00000015558	SMG7	100	89.025	ENSSHAG00000013147	SMG7	100	88.762	Sarcophilus_harrisii
ENSSSCG00000015558	SMG7	91	75.789	ENSSFOG00015017252	smg7	99	75.789	Scleropages_formosus
ENSSSCG00000015558	SMG7	99	64.950	ENSSMAG00000006067	smg7	99	64.925	Scophthalmus_maximus
ENSSSCG00000015558	SMG7	95	72.199	ENSSDUG00000017543	smg7	99	64.651	Seriola_dumerili
ENSSSCG00000015558	SMG7	99	86.572	ENSSPUG00000002064	SMG7	99	86.396	Sphenodon_punctatus
ENSSSCG00000015558	SMG7	100	64.162	ENSSPAG00000008733	smg7	100	63.934	Stegastes_partitus
ENSSSCG00000015558	SMG7	99	85.991	ENSTGUG00000003928	SMG7	100	85.903	Taeniopygia_guttata
ENSSSCG00000015558	SMG7	99	64.400	ENSTNIG00000002802	smg7	99	64.195	Tetraodon_nigroviridis
ENSSSCG00000015558	SMG7	77	94.915	ENSTBEG00000003220	SMG7	75	94.915	Tupaia_belangeri
ENSSSCG00000015558	SMG7	96	98.265	ENSTTRG00000014778	SMG7	94	98.265	Tursiops_truncatus
ENSSSCG00000015558	SMG7	96	98.093	ENSUAMG00000017473	SMG7	100	98.093	Ursus_americanus
ENSSSCG00000015558	SMG7	96	98.093	ENSUMAG00000016389	SMG7	100	98.093	Ursus_maritimus
ENSSSCG00000015558	SMG7	100	98.247	ENSVVUG00000008976	SMG7	100	98.389	Vulpes_vulpes
ENSSSCG00000015558	SMG7	100	68.739	ENSXETG00000012528	smg7	100	69.037	Xenopus_tropicalis
ENSSSCG00000015558	SMG7	99	63.581	ENSXMAG00000007123	smg7	99	63.754	Xiphophorus_maculatus