EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000015692 (Gene tree)
Gene ID: 100525081
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 183584 bases
Position: chr15:16230922-16414505
Accession: 100525081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000025347	R3H	PF01424.22	2.6e-11	1	1
ENSSSCP00000041606	R3H	PF01424.22	2.7e-11	1	1
ENSSSCP00000059115	R3H	PF01424.22	2.9e-11	1	1
ENSSSCP00000034264	R3H	PF01424.22	3e-11	1	1
ENSSSCP00000034041	R3H	PF01424.22	3.1e-11	1	1
ENSSSCP00000031715	R3H	PF01424.22	3.1e-11	1	1
ENSSSCP00000016634	R3H	PF01424.22	3.2e-11	1	1
ENSSSCP00000041129	R3H	PF01424.22	3.2e-11	1	1
ENSSSCP00000052758	R3H	PF01424.22	3.2e-11	1	1
ENSSSCP00000043594	R3H	PF01424.22	1.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000065524	R3HDM1-201	4875	XM_021075208	ENSSSCP00000041129	1134 (aa)	XP_020930867	F1S0D6
ENSSSCT00000044974	R3HDM1-207	4356	XM_021075241	ENSSSCP00000041606	988 (aa)	XP_020930900	A0A287ACR7
ENSSSCT00000038438	R3HDM1-208	4351	XM_021075219	ENSSSCP00000034264	1044 (aa)	XP_020930878	A0A286ZRL5
ENSSSCT00000050228	R3HDM1-210	4617	XM_021075211	ENSSSCP00000052758	1117 (aa)	XP_020930870	A0A287B9J5
ENSSSCT00000042921	R3HDM1-202	4622	XM_021075218	ENSSSCP00000043594	1080 (aa)	XP_020930877	A0A287AI90
ENSSSCT00000017092	R3HDM1-206	4822	XM_021075209	ENSSSCP00000016634	1134 (aa)	XP_020930868	F1S0D6
ENSSSCT00000066422	R3HDM1-209	4636	XM_021075217	ENSSSCP00000034041	1085 (aa)	XP_020930876	A0A286ZRE8
ENSSSCT00000058927	R3HDM1-204	4619	XM_021075216	ENSSSCP00000059115	1056 (aa)	XP_020930875	A0A287BR57
ENSSSCT00000023564	R3HDM1-205	4275	XM_021075246	ENSSSCP00000025347	954 (aa)	XP_020930905	I3LMM6
ENSSSCT00000041615	R3HDM1-203	4703	XM_021075213	ENSSSCP00000031715	1100 (aa)	XP_020930872	A0A286ZJS7

Gene Model

Click here to download ENSSSCG00000015692's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000015692's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000015692	R3HDM1	99	50.667	ENSSSCG00000026498	R3HDM2	96	60.459

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000015692	R3HDM1	100	95.104	ENSG00000048991	R3HDM1	100	97.238	Homo_sapiens
ENSSSCG00000015692	R3HDM1	88	60.215	ENSAPOG00000020850	r3hdm1	92	60.215	Acanthochromis_polyacanthus
ENSSSCG00000015692	R3HDM1	100	97.189	ENSAMEG00000014886	R3HDM1	100	97.189	Ailuropoda_melanoleuca
ENSSSCG00000015692	R3HDM1	87	55.062	ENSAOCG00000005192	r3hdm1	95	55.062	Amphiprion_ocellaris
ENSSSCG00000015692	R3HDM1	87	60.215	ENSAPEG00000016108	r3hdm1	95	60.215	Amphiprion_percula
ENSSSCG00000015692	R3HDM1	87	60.377	ENSATEG00000000232	r3hdm1	95	60.377	Anabas_testudineus
ENSSSCG00000015692	R3HDM1	100	79.548	ENSAPLG00000015231	R3HDM1	100	79.729	Anas_platyrhynchos
ENSSSCG00000015692	R3HDM1	100	79.825	ENSACAG00000001676	R3HDM1	100	80.088	Anolis_carolinensis
ENSSSCG00000015692	R3HDM1	100	95.109	ENSANAG00000035334	R3HDM1	100	96.409	Aotus_nancymaae
ENSSSCG00000015692	R3HDM1	87	58.871	ENSACLG00000027282	r3hdm1	94	58.871	Astatotilapia_calliptera
ENSSSCG00000015692	R3HDM1	61	40.483	ENSAMXG00000020587	arpp21	84	59.109	Astyanax_mexicanus
ENSSSCG00000015692	R3HDM1	89	77.950	ENSAMXG00000012861	R3HDM1	100	72.356	Astyanax_mexicanus
ENSSSCG00000015692	R3HDM1	88	74.051	ENSAMXG00000003536	r3hdm1	92	72.046	Astyanax_mexicanus
ENSSSCG00000015692	R3HDM1	100	97.681	ENSBTAG00000013302	R3HDM1	100	96.737	Bos_taurus
ENSSSCG00000015692	R3HDM1	100	95.009	ENSCJAG00000011718	R3HDM1	100	96.409	Callithrix_jacchus
ENSSSCG00000015692	R3HDM1	100	97.461	ENSCAFG00000005075	R3HDM1	100	97.461	Canis_familiaris
ENSSSCG00000015692	R3HDM1	100	97.371	ENSCAFG00020016119	R3HDM1	100	97.371	Canis_lupus_dingo
ENSSSCG00000015692	R3HDM1	100	96.598	ENSCHIG00000020851	R3HDM1	100	96.598	Capra_hircus
ENSSSCG00000015692	R3HDM1	100	92.625	ENSCPOG00000012784	R3HDM1	100	94.515	Cavia_porcellus
ENSSSCG00000015692	R3HDM1	100	95.033	ENSCCAG00000027199	R3HDM1	100	95.580	Cebus_capucinus
ENSSSCG00000015692	R3HDM1	100	95.948	ENSCATG00000023642	R3HDM1	100	96.685	Cercocebus_atys
ENSSSCG00000015692	R3HDM1	100	91.747	ENSCLAG00000007962	R3HDM1	100	94.856	Chinchilla_lanigera
ENSSSCG00000015692	R3HDM1	100	94.811	ENSCSAG00000016356	R3HDM1	100	94.723	Chlorocebus_sabaeus
ENSSSCG00000015692	R3HDM1	81	93.939	ENSCHOG00000013638	R3HDM1	91	84.478	Choloepus_hoffmanni
ENSSSCG00000015692	R3HDM1	91	91.732	ENSCPBG00000009645	R3HDM1	100	90.775	Chrysemys_picta_bellii
ENSSSCG00000015692	R3HDM1	100	94.746	ENSCANG00000034748	R3HDM1	100	96.685	Colobus_angolensis_palliatus
ENSSSCG00000015692	R3HDM1	99	91.887	ENSCGRG00001012357	R3hdm1	97	91.799	Cricetulus_griseus_chok1gshd
ENSSSCG00000015692	R3HDM1	100	91.828	ENSCGRG00000012080	R3hdm1	100	95.122	Cricetulus_griseus_crigri
ENSSSCG00000015692	R3HDM1	81	61.921	ENSCSEG00000008944	r3hdm1	93	53.830	Cynoglossus_semilaevis
ENSSSCG00000015692	R3HDM1	87	58.602	ENSCVAG00000007582	r3hdm1	91	58.602	Cyprinodon_variegatus
ENSSSCG00000015692	R3HDM1	59	48.396	ENSDARG00000061081	arpp21	62	44.784	Danio_rerio
ENSSSCG00000015692	R3HDM1	100	92.320	ENSDNOG00000000771	R3HDM1	100	91.336	Dasypus_novemcinctus
ENSSSCG00000015692	R3HDM1	100	82.743	ENSETEG00000013606	R3HDM1	100	83.106	Echinops_telfairi
ENSSSCG00000015692	R3HDM1	54	53.177	ENSEBUG00000014746	arpp21	97	42.553	Eptatretus_burgeri
ENSSSCG00000015692	R3HDM1	100	96.730	ENSEASG00005007392	R3HDM1	100	96.730	Equus_asinus_asinus
ENSSSCG00000015692	R3HDM1	100	97.003	ENSECAG00000019114	R3HDM1	100	98.522	Equus_caballus
ENSSSCG00000015692	R3HDM1	86	89.286	ENSEEUG00000012589	R3HDM1	86	89.286	Erinaceus_europaeus
ENSSSCG00000015692	R3HDM1	94	51.351	ENSELUG00000014413	r3hdm1	87	75.465	Esox_lucius
ENSSSCG00000015692	R3HDM1	83	73.856	ENSELUG00000004909	R3HDM1	89	75.636	Esox_lucius
ENSSSCG00000015692	R3HDM1	100	97.094	ENSFCAG00000027113	R3HDM1	100	99.015	Felis_catus
ENSSSCG00000015692	R3HDM1	91	74.446	ENSFALG00000013731	R3HDM1	93	70.773	Ficedula_albicollis
ENSSSCG00000015692	R3HDM1	100	92.011	ENSFDAG00000016478	R3HDM1	100	95.062	Fukomys_damarensis
ENSSSCG00000015692	R3HDM1	87	54.568	ENSFHEG00000018713	r3hdm1	91	59.140	Fundulus_heteroclitus
ENSSSCG00000015692	R3HDM1	50	64.348	ENSGMOG00000006042	-	74	67.888	Gadus_morhua
ENSSSCG00000015692	R3HDM1	94	79.734	ENSGALG00000012246	R3HDM1	99	90.278	Gallus_gallus
ENSSSCG00000015692	R3HDM1	87	58.871	ENSGAFG00000006203	r3hdm1	95	58.871	Gambusia_affinis
ENSSSCG00000015692	R3HDM1	86	64.725	ENSGACG00000014925	r3hdm1	92	64.725	Gasterosteus_aculeatus
ENSSSCG00000015692	R3HDM1	99	79.718	ENSGAGG00000007840	R3HDM1	100	78.060	Gopherus_agassizii
ENSSSCG00000015692	R3HDM1	100	94.923	ENSGGOG00000008156	R3HDM1	100	97.238	Gorilla_gorilla
ENSSSCG00000015692	R3HDM1	100	92.687	ENSHGLG00000015718	R3HDM1	100	95.062	Heterocephalus_glaber_female
ENSSSCG00000015692	R3HDM1	100	73.295	ENSHGLG00100015374	-	100	73.295	Heterocephalus_glaber_male
ENSSSCG00000015692	R3HDM1	100	92.423	ENSHGLG00100003184	-	100	95.062	Heterocephalus_glaber_male
ENSSSCG00000015692	R3HDM1	87	57.065	ENSHCOG00000013366	r3hdm1	91	57.880	Hippocampus_comes
ENSSSCG00000015692	R3HDM1	87	66.129	ENSIPUG00000001676	R3HDM1	99	66.029	Ictalurus_punctatus
ENSSSCG00000015692	R3HDM1	64	32.737	ENSIPUG00000020552	arpp21	84	44.590	Ictalurus_punctatus
ENSSSCG00000015692	R3HDM1	89	68.308	ENSIPUG00000013629	r3hdm1	95	69.132	Ictalurus_punctatus
ENSSSCG00000015692	R3HDM1	100	94.742	ENSSTOG00000007572	R3HDM1	100	96.502	Ictidomys_tridecemlineatus
ENSSSCG00000015692	R3HDM1	95	73.736	ENSLACG00000005334	R3HDM1	100	74.273	Latimeria_chalumnae
ENSSSCG00000015692	R3HDM1	100	66.963	ENSLOCG00000001641	r3hdm1	100	66.429	Lepisosteus_oculatus
ENSSSCG00000015692	R3HDM1	100	94.718	ENSLAFG00000009065	R3HDM1	100	94.718	Loxodonta_africana
ENSSSCG00000015692	R3HDM1	100	95.014	ENSMFAG00000030331	R3HDM1	100	97.238	Macaca_fascicularis
ENSSSCG00000015692	R3HDM1	100	94.832	ENSMMUG00000009844	R3HDM1	100	97.238	Macaca_mulatta
ENSSSCG00000015692	R3HDM1	100	94.832	ENSMNEG00000027793	R3HDM1	100	97.238	Macaca_nemestrina
ENSSSCG00000015692	R3HDM1	100	95.104	ENSMLEG00000043189	R3HDM1	100	97.238	Mandrillus_leucophaeus
ENSSSCG00000015692	R3HDM1	87	59.409	ENSMAMG00000004532	r3hdm1	91	59.409	Mastacembelus_armatus
ENSSSCG00000015692	R3HDM1	87	58.871	ENSMZEG00005003157	r3hdm1	95	58.871	Maylandia_zebra
ENSSSCG00000015692	R3HDM1	100	78.986	ENSMGAG00000012461	R3HDM1	100	78.986	Meleagris_gallopavo
ENSSSCG00000015692	R3HDM1	100	91.236	ENSMAUG00000010315	R3hdm1	100	95.470	Mesocricetus_auratus
ENSSSCG00000015692	R3HDM1	100	93.846	ENSMICG00000005900	-	100	96.409	Microcebus_murinus
ENSSSCG00000015692	R3HDM1	95	90.595	ENSMICG00000042655	-	100	96.133	Microcebus_murinus
ENSSSCG00000015692	R3HDM1	90	81.333	ENSMODG00000000923	R3HDM1	97	81.333	Monodelphis_domestica
ENSSSCG00000015692	R3HDM1	99	54.750	ENSMALG00000009000	r3hdm1	100	46.960	Monopterus_albus
ENSSSCG00000015692	R3HDM1	100	91.021	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.425	Mus_caroli
ENSSSCG00000015692	R3HDM1	100	90.933	ENSMUSG00000056211	R3hdm1	100	94.425	Mus_musculus
ENSSSCG00000015692	R3HDM1	100	90.933	MGP_PahariEiJ_G0027779	R3hdm1	100	94.142	Mus_pahari
ENSSSCG00000015692	R3HDM1	100	91.109	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.425	Mus_spretus
ENSSSCG00000015692	R3HDM1	100	97.366	ENSMPUG00000002412	R3HDM1	100	97.366	Mustela_putorius_furo
ENSSSCG00000015692	R3HDM1	100	94.937	ENSMLUG00000013824	R3HDM1	100	94.846	Myotis_lucifugus
ENSSSCG00000015692	R3HDM1	100	94.923	ENSNLEG00000008622	R3HDM1	100	96.685	Nomascus_leucogenys
ENSSSCG00000015692	R3HDM1	89	73.163	ENSMEUG00000011784	R3HDM1	100	73.163	Notamacropus_eugenii
ENSSSCG00000015692	R3HDM1	100	91.733	ENSODEG00000008607	R3HDM1	100	95.267	Octodon_degus
ENSSSCG00000015692	R3HDM1	94	63.158	ENSONIG00000012017	r3hdm1	91	63.158	Oreochromis_niloticus
ENSSSCG00000015692	R3HDM1	100	82.114	ENSOANG00000007987	R3HDM1	100	82.114	Ornithorhynchus_anatinus
ENSSSCG00000015692	R3HDM1	89	93.902	ENSOCUG00000017366	R3HDM1	98	93.801	Oryctolagus_cuniculus
ENSSSCG00000015692	R3HDM1	87	59.409	ENSORLG00000004297	r3hdm1	91	59.409	Oryzias_latipes
ENSSSCG00000015692	R3HDM1	89	58.871	ENSORLG00015017355	r3hdm1	91	58.871	Oryzias_latipes_hsok
ENSSSCG00000015692	R3HDM1	100	94.732	ENSOGAG00000003136	R3HDM1	100	94.732	Otolemur_garnettii
ENSSSCG00000015692	R3HDM1	100	96.182	ENSOARG00000010788	R3HDM1	100	96.182	Ovis_aries
ENSSSCG00000015692	R3HDM1	100	95.023	ENSPPAG00000027858	R3HDM1	100	97.238	Pan_paniscus
ENSSSCG00000015692	R3HDM1	100	96.821	ENSPPRG00000002626	R3HDM1	100	98.619	Panthera_pardus
ENSSSCG00000015692	R3HDM1	100	96.821	ENSPTIG00000016581	R3HDM1	100	98.895	Panthera_tigris_altaica
ENSSSCG00000015692	R3HDM1	100	94.932	ENSPTRG00000012494	R3HDM1	100	97.238	Pan_troglodytes
ENSSSCG00000015692	R3HDM1	100	95.014	ENSPANG00000026448	R3HDM1	100	97.238	Papio_anubis
ENSSSCG00000015692	R3HDM1	96	68.278	ENSPKIG00000004328	r3hdm1	91	76.190	Paramormyrops_kingsleyae
ENSSSCG00000015692	R3HDM1	100	78.986	ENSPSIG00000012915	R3HDM1	100	78.986	Pelodiscus_sinensis
ENSSSCG00000015692	R3HDM1	100	92.077	ENSPEMG00000015187	R3hdm1	100	95.122	Peromyscus_maniculatus_bairdii
ENSSSCG00000015692	R3HDM1	90	53.209	ENSPMAG00000003369	-	92	53.209	Petromyzon_marinus
ENSSSCG00000015692	R3HDM1	100	86.538	ENSPCIG00000002491	R3HDM1	100	90.441	Phascolarctos_cinereus
ENSSSCG00000015692	R3HDM1	87	52.696	ENSPFOG00000015036	r3hdm1	99	48.553	Poecilia_formosa
ENSSSCG00000015692	R3HDM1	87	56.952	ENSPLAG00000018042	r3hdm1	91	56.952	Poecilia_latipinna
ENSSSCG00000015692	R3HDM1	87	56.952	ENSPMEG00000023947	r3hdm1	91	56.952	Poecilia_mexicana
ENSSSCG00000015692	R3HDM1	81	64.706	ENSPREG00000007902	r3hdm1	94	57.333	Poecilia_reticulata
ENSSSCG00000015692	R3HDM1	100	93.297	ENSPPYG00000012815	R3HDM1	100	93.116	Pongo_abelii
ENSSSCG00000015692	R3HDM1	94	92.453	ENSPCAG00000006208	R3HDM1	93	92.453	Procavia_capensis
ENSSSCG00000015692	R3HDM1	100	92.398	ENSPCOG00000012698	R3HDM1	100	93.475	Propithecus_coquereli
ENSSSCG00000015692	R3HDM1	100	86.968	ENSPVAG00000006098	R3HDM1	100	86.878	Pteropus_vampyrus
ENSSSCG00000015692	R3HDM1	88	75.962	ENSPNAG00000005436	R3HDM1	99	76.451	Pygocentrus_nattereri
ENSSSCG00000015692	R3HDM1	94	70.645	ENSPNAG00000013952	r3hdm1	92	72.965	Pygocentrus_nattereri
ENSSSCG00000015692	R3HDM1	53	58.000	ENSPNAG00000004162	arpp21	57	58.000	Pygocentrus_nattereri
ENSSSCG00000015692	R3HDM1	100	90.845	ENSRNOG00000004099	R3hdm1	100	90.396	Rattus_norvegicus
ENSSSCG00000015692	R3HDM1	100	93.756	ENSRBIG00000033317	R3HDM1	100	98.524	Rhinopithecus_bieti
ENSSSCG00000015692	R3HDM1	100	94.837	ENSRROG00000034534	R3HDM1	100	94.746	Rhinopithecus_roxellana
ENSSSCG00000015692	R3HDM1	100	94.470	ENSSBOG00000020389	R3HDM1	100	95.856	Saimiri_boliviensis_boliviensis
ENSSSCG00000015692	R3HDM1	100	85.209	ENSSHAG00000016999	R3HDM1	100	85.209	Sarcophilus_harrisii
ENSSSCG00000015692	R3HDM1	93	70.944	ENSSFOG00015014134	r3hdm1	100	70.874	Scleropages_formosus
ENSSSCG00000015692	R3HDM1	100	56.584	ENSSFOG00015019851	-	96	62.823	Scleropages_formosus
ENSSSCG00000015692	R3HDM1	99	57.221	ENSSMAG00000001669	r3hdm1	94	57.221	Scophthalmus_maximus
ENSSSCG00000015692	R3HDM1	87	59.517	ENSSDUG00000010749	r3hdm1	91	59.517	Seriola_dumerili
ENSSSCG00000015692	R3HDM1	92	65.372	ENSSLDG00000004499	r3hdm1	99	47.815	Seriola_lalandi_dorsalis
ENSSSCG00000015692	R3HDM1	75	79.565	ENSSARG00000000352	-	69	83.389	Sorex_araneus
ENSSSCG00000015692	R3HDM1	100	80.797	ENSSPUG00000004167	R3HDM1	100	80.616	Sphenodon_punctatus
ENSSSCG00000015692	R3HDM1	87	60.215	ENSSPAG00000004648	r3hdm1	91	60.215	Stegastes_partitus
ENSSSCG00000015692	R3HDM1	100	73.893	ENSTGUG00000011750	R3HDM1	100	73.984	Taeniopygia_guttata
ENSSSCG00000015692	R3HDM1	87	55.670	ENSTRUG00000011654	r3hdm1	91	55.670	Takifugu_rubripes
ENSSSCG00000015692	R3HDM1	86	46.403	ENSTNIG00000010362	r3hdm1	82	64.725	Tetraodon_nigroviridis
ENSSSCG00000015692	R3HDM1	100	89.646	ENSTTRG00000003935	R3HDM1	100	89.646	Tursiops_truncatus
ENSSSCG00000015692	R3HDM1	70	97.935	ENSUAMG00000024806	R3HDM1	99	96.494	Ursus_americanus
ENSSSCG00000015692	R3HDM1	100	96.594	ENSUMAG00000005552	R3HDM1	100	99.171	Ursus_maritimus
ENSSSCG00000015692	R3HDM1	97	98.246	ENSVPAG00000007333	R3HDM1	93	98.246	Vicugna_pacos
ENSSSCG00000015692	R3HDM1	100	97.359	ENSVVUG00000006457	R3HDM1	100	97.359	Vulpes_vulpes
ENSSSCG00000015692	R3HDM1	89	68.044	ENSXETG00000019330	r3hdm1	100	67.843	Xenopus_tropicalis
ENSSSCG00000015692	R3HDM1	71	51.094	ENSXCOG00000017448	r3hdm1	94	50.585	Xiphophorus_couchianus
ENSSSCG00000015692	R3HDM1	87	58.871	ENSXMAG00000007885	r3hdm1	88	58.871	Xiphophorus_maculatus