EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000015938 (Gene tree)
Gene ID: 100152189
Gene Symbol: SSB
Alias: LARP3|La|La/SSB
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 12149 bases
Position: chr15:76088598-76100746
Accession: 100152189
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000016890	RRM_1	PF00076.22	2.2e-15	1	1
ENSSSCP00000057284	RRM_1	PF00076.22	2.2e-15	1	1
ENSSSCP00000016890	RRM_3	PF08777.11	2.4e-26	1	1
ENSSSCP00000057284	RRM_3	PF08777.11	2.4e-26	1	1
ENSSSCP00000016890	La	PF05383.17	1.4e-21	1	1
ENSSSCP00000057284	La	PF05383.17	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000049757	SSB-201	4228	XM_001924998	ENSSSCP00000057284	401 (aa)	XP_001925033	F1S1V1
ENSSSCT00000017354	SSB-202	3042	XM_005671925	ENSSSCP00000016890	401 (aa)	XP_005671982	F1S1V1

Gene Model

Click here to download ENSSSCG00000015938's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000015938's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000015938	SSB	98	77.307	ENSG00000138385	SSB	100	94.022	Homo_sapiens
ENSSSCG00000015938	SSB	94	51.842	ENSAPOG00000003448	ssb	99	53.125	Acanthochromis_polyacanthus
ENSSSCG00000015938	SSB	98	75.787	ENSAMEG00000010507	SSB	98	74.576	Ailuropoda_melanoleuca
ENSSSCG00000015938	SSB	91	54.496	ENSACIG00000001738	ssb	88	62.602	Amphilophus_citrinellus
ENSSSCG00000015938	SSB	94	53.158	ENSAOCG00000020398	ssb	99	53.646	Amphiprion_ocellaris
ENSSSCG00000015938	SSB	94	53.421	ENSAPEG00000020395	ssb	99	53.906	Amphiprion_percula
ENSSSCG00000015938	SSB	91	55.014	ENSATEG00000016884	ssb	92	55.285	Anabas_testudineus
ENSSSCG00000015938	SSB	84	70.833	ENSAPLG00000006109	SSB	98	63.221	Anas_platyrhynchos
ENSSSCG00000015938	SSB	91	59.615	ENSACAG00000017008	SSB	89	60.383	Anolis_carolinensis
ENSSSCG00000015938	SSB	98	69.018	ENSANAG00000027195	-	98	68.766	Aotus_nancymaae
ENSSSCG00000015938	SSB	96	53.077	ENSACLG00000010798	ssb	98	52.020	Astatotilapia_calliptera
ENSSSCG00000015938	SSB	81	53.846	ENSAMXG00000012606	ssb	90	51.622	Astyanax_mexicanus
ENSSSCG00000015938	SSB	98	78.392	ENSBTAG00000008716	SSB	98	77.582	Bos_taurus
ENSSSCG00000015938	SSB	65	35.249	WBGene00016653	C44E4.4	65	36.398	Caenorhabditis_elegans
ENSSSCG00000015938	SSB	98	77.136	ENSCJAG00000045073	SSB	85	95.652	Callithrix_jacchus
ENSSSCG00000015938	SSB	98	78.446	ENSCAFG00000012418	SSB	98	77.889	Canis_familiaris
ENSSSCG00000015938	SSB	98	78.446	ENSCAFG00020002900	SSB	98	77.889	Canis_lupus_dingo
ENSSSCG00000015938	SSB	98	75.253	ENSCHIG00000022196	-	98	74.430	Capra_hircus
ENSSSCG00000015938	SSB	96	79.381	ENSCHIG00000022624	-	96	78.553	Capra_hircus
ENSSSCG00000015938	SSB	98	77.889	ENSTSYG00000000097	SSB	98	77.834	Carlito_syrichta
ENSSSCG00000015938	SSB	98	78.643	ENSCPOG00000003338	SSB	98	78.086	Cavia_porcellus
ENSSSCG00000015938	SSB	98	77.638	ENSCCAG00000035147	SSB	86	96.522	Cebus_capucinus
ENSSSCG00000015938	SSB	98	57.035	ENSCATG00000036701	SSB	98	56.675	Cercocebus_atys
ENSSSCG00000015938	SSB	98	55.639	ENSCATG00000042909	-	98	55.164	Cercocebus_atys
ENSSSCG00000015938	SSB	98	78.894	ENSCLAG00000015617	-	98	78.338	Chinchilla_lanigera
ENSSSCG00000015938	SSB	96	71.907	ENSCSAG00000018390	-	97	71.503	Chlorocebus_sabaeus
ENSSSCG00000015938	SSB	98	77.136	ENSCSAG00000015200	SSB	87	76.826	Chlorocebus_sabaeus
ENSSSCG00000015938	SSB	98	79.500	ENSCHOG00000007763	SSB	98	78.697	Choloepus_hoffmanni
ENSSSCG00000015938	SSB	91	70.055	ENSCPBG00000006519	SSB	89	70.765	Chrysemys_picta_bellii
ENSSSCG00000015938	SSB	98	66.165	ENSCANG00000033240	-	99	65.337	Colobus_angolensis_palliatus
ENSSSCG00000015938	SSB	98	77.638	ENSCANG00000027695	SSB	98	77.078	Colobus_angolensis_palliatus
ENSSSCG00000015938	SSB	98	59.045	ENSCANG00000028838	-	95	58.438	Colobus_angolensis_palliatus
ENSSSCG00000015938	SSB	99	73.333	ENSCGRG00001024831	Ssb	99	73.529	Cricetulus_griseus_chok1gshd
ENSSSCG00000015938	SSB	99	73.333	ENSCGRG00000005387	Ssb	99	73.529	Cricetulus_griseus_crigri
ENSSSCG00000015938	SSB	96	52.564	ENSCSEG00000011599	ssb	96	52.821	Cynoglossus_semilaevis
ENSSSCG00000015938	SSB	96	55.243	ENSCVAG00000021558	ssb	97	55.243	Cyprinodon_variegatus
ENSSSCG00000015938	SSB	91	54.768	ENSDARG00000029252	ssb	91	54.918	Danio_rerio
ENSSSCG00000015938	SSB	98	78.392	ENSDNOG00000013450	SSB	98	77.834	Dasypus_novemcinctus
ENSSSCG00000015938	SSB	98	70.936	ENSDORG00000005543	Ssb	99	69.830	Dipodomys_ordii
ENSSSCG00000015938	SSB	83	32.764	FBgn0011638	La	73	36.424	Drosophila_melanogaster
ENSSSCG00000015938	SSB	50	88.557	ENSETEG00000004614	-	52	88.557	Echinops_telfairi
ENSSSCG00000015938	SSB	81	50.000	ENSEBUG00000001237	ssb	91	47.740	Eptatretus_burgeri
ENSSSCG00000015938	SSB	98	78.894	ENSEASG00005022835	SSB	98	78.338	Equus_asinus_asinus
ENSSSCG00000015938	SSB	98	78.894	ENSECAG00000018495	SSB	98	78.338	Equus_caballus
ENSSSCG00000015938	SSB	76	70.164	ENSEEUG00000008077	SSB	78	70.164	Erinaceus_europaeus
ENSSSCG00000015938	SSB	94	57.330	ENSELUG00000020929	ssb	96	56.736	Esox_lucius
ENSSSCG00000015938	SSB	98	78.697	ENSFCAG00000011601	SSB	97	78.571	Felis_catus
ENSSSCG00000015938	SSB	98	65.414	ENSFALG00000000930	SSB	98	66.165	Ficedula_albicollis
ENSSSCG00000015938	SSB	98	78.643	ENSFDAG00000000598	SSB	98	78.086	Fukomys_damarensis
ENSSSCG00000015938	SSB	73	46.575	ENSFHEG00000003268	ssb	92	51.342	Fundulus_heteroclitus
ENSSSCG00000015938	SSB	93	51.414	ENSGMOG00000002664	ssb	95	53.786	Gadus_morhua
ENSSSCG00000015938	SSB	98	65.500	ENSGALG00000009677	SSB	98	65.500	Gallus_gallus
ENSSSCG00000015938	SSB	91	53.117	ENSGAFG00000002749	ssb	91	54.743	Gambusia_affinis
ENSSSCG00000015938	SSB	97	50.877	ENSGACG00000005107	ssb	98	51.128	Gasterosteus_aculeatus
ENSSSCG00000015938	SSB	91	69.505	ENSGAGG00000007807	SSB	89	70.219	Gopherus_agassizii
ENSSSCG00000015938	SSB	96	64.524	ENSGGOG00000024891	-	95	64.083	Gorilla_gorilla
ENSSSCG00000015938	SSB	60	75.758	ENSGGOG00000023471	-	97	75.758	Gorilla_gorilla
ENSSSCG00000015938	SSB	81	54.711	ENSHBUG00000006584	ssb	93	52.139	Haplochromis_burtoni
ENSSSCG00000015938	SSB	98	77.284	ENSHGLG00000017580	-	98	76.296	Heterocephalus_glaber_female
ENSSSCG00000015938	SSB	98	72.111	ENSHGLG00000004478	-	98	71.608	Heterocephalus_glaber_female
ENSSSCG00000015938	SSB	94	74.084	ENSHGLG00000005832	-	97	73.491	Heterocephalus_glaber_female
ENSSSCG00000015938	SSB	98	77.284	ENSHGLG00100003084	-	98	76.296	Heterocephalus_glaber_male
ENSSSCG00000015938	SSB	91	70.492	ENSHGLG00100008767	-	91	69.863	Heterocephalus_glaber_male
ENSSSCG00000015938	SSB	89	51.801	ENSHCOG00000019011	ssb	97	50.386	Hippocampus_comes
ENSSSCG00000015938	SSB	89	58.101	ENSIPUG00000003681	SSB	88	58.101	Ictalurus_punctatus
ENSSSCG00000015938	SSB	98	78.589	ENSSTOG00000008416	SSB	98	77.582	Ictidomys_tridecemlineatus
ENSSSCG00000015938	SSB	96	61.818	ENSJJAG00000016250	-	95	61.198	Jaculus_jaculus
ENSSSCG00000015938	SSB	96	73.449	ENSJJAG00000023158	-	96	71.642	Jaculus_jaculus
ENSSSCG00000015938	SSB	93	53.846	ENSKMAG00000017317	ssb	94	54.111	Kryptolebias_marmoratus
ENSSSCG00000015938	SSB	92	52.419	ENSLBEG00000017345	ssb	94	53.723	Labrus_bergylta
ENSSSCG00000015938	SSB	91	63.462	ENSLACG00000014056	SSB	89	63.462	Latimeria_chalumnae
ENSSSCG00000015938	SSB	94	61.942	ENSLOCG00000007933	ssb	94	62.205	Lepisosteus_oculatus
ENSSSCG00000015938	SSB	75	64.570	ENSLAFG00000026721	-	99	64.238	Loxodonta_africana
ENSSSCG00000015938	SSB	94	73.804	ENSLAFG00000000867	-	98	72.771	Loxodonta_africana
ENSSSCG00000015938	SSB	98	65.995	ENSLAFG00000028909	-	98	65.163	Loxodonta_africana
ENSSSCG00000015938	SSB	89	68.908	ENSMFAG00000041478	-	92	71.818	Macaca_fascicularis
ENSSSCG00000015938	SSB	98	77.387	ENSMFAG00000039066	SSB	85	96.522	Macaca_fascicularis
ENSSSCG00000015938	SSB	98	77.387	ENSMMUG00000023051	SSB	85	96.522	Macaca_mulatta
ENSSSCG00000015938	SSB	99	66.000	ENSMMUG00000011724	-	97	65.500	Macaca_mulatta
ENSSSCG00000015938	SSB	98	51.637	ENSMMUG00000039889	-	98	51.392	Macaca_mulatta
ENSSSCG00000015938	SSB	89	68.908	ENSMNEG00000034698	-	92	71.818	Macaca_nemestrina
ENSSSCG00000015938	SSB	98	66.998	ENSMNEG00000028321	SSB	85	96.522	Macaca_nemestrina
ENSSSCG00000015938	SSB	99	55.250	ENSMLEG00000042644	-	99	54.250	Mandrillus_leucophaeus
ENSSSCG00000015938	SSB	98	77.387	ENSMLEG00000035717	SSB	88	96.522	Mandrillus_leucophaeus
ENSSSCG00000015938	SSB	93	56.233	ENSMAMG00000004800	ssb	94	56.499	Mastacembelus_armatus
ENSSSCG00000015938	SSB	96	53.077	ENSMZEG00005005749	ssb	98	52.020	Maylandia_zebra
ENSSSCG00000015938	SSB	98	65.000	ENSMGAG00000010328	SSB	97	77.387	Meleagris_gallopavo
ENSSSCG00000015938	SSB	98	77.638	ENSMICG00000028252	-	98	77.582	Microcebus_murinus
ENSSSCG00000015938	SSB	98	71.033	ENSMICG00000033304	-	94	74.663	Microcebus_murinus
ENSSSCG00000015938	SSB	95	66.667	ENSMODG00000008227	-	98	67.654	Monodelphis_domestica
ENSSSCG00000015938	SSB	95	57.330	ENSMODG00000019271	-	99	56.858	Monodelphis_domestica
ENSSSCG00000015938	SSB	99	54.863	ENSMODG00000007027	-	99	54.863	Monodelphis_domestica
ENSSSCG00000015938	SSB	91	52.446	ENSMALG00000008045	ssb	89	54.570	Monopterus_albus
ENSSSCG00000015938	SSB	99	71.223	MGP_CAROLIEiJ_G0023629	-	100	90.217	Mus_caroli
ENSSSCG00000015938	SSB	99	71.463	ENSMUSG00000068882	Ssb	100	90.217	Mus_musculus
ENSSSCG00000015938	SSB	99	71.463	MGP_PahariEiJ_G0025081	-	100	91.304	Mus_pahari
ENSSSCG00000015938	SSB	99	71.463	MGP_SPRETEiJ_G0024551	Ssb	100	90.217	Mus_spretus
ENSSSCG00000015938	SSB	98	78.894	ENSMPUG00000000785	SSB	98	78.338	Mustela_putorius_furo
ENSSSCG00000015938	SSB	98	75.912	ENSMLUG00000016316	SSB	98	74.696	Myotis_lucifugus
ENSSSCG00000015938	SSB	96	52.564	ENSNBRG00000012661	ssb	98	50.933	Neolamprologus_brichardi
ENSSSCG00000015938	SSB	84	66.864	ENSNLEG00000028754	-	79	67.576	Nomascus_leucogenys
ENSSSCG00000015938	SSB	98	77.638	ENSNLEG00000004958	SSB	86	96.522	Nomascus_leucogenys
ENSSSCG00000015938	SSB	62	79.839	ENSMEUG00000001650	-	100	79.839	Notamacropus_eugenii
ENSSSCG00000015938	SSB	69	55.674	ENSOPRG00000008475	-	97	55.674	Ochotona_princeps
ENSSSCG00000015938	SSB	91	75.815	ENSODEG00000004202	-	98	73.925	Octodon_degus
ENSSSCG00000015938	SSB	81	55.927	ENSONIG00000008776	ssb	96	51.948	Oreochromis_niloticus
ENSSSCG00000015938	SSB	98	70.000	ENSOANG00000008543	SSB	98	71.500	Ornithorhynchus_anatinus
ENSSSCG00000015938	SSB	98	77.330	ENSOCUG00000010396	SSB	98	77.330	Oryctolagus_cuniculus
ENSSSCG00000015938	SSB	93	54.090	ENSORLG00000017208	ssb	94	55.145	Oryzias_latipes
ENSSSCG00000015938	SSB	81	57.143	ENSORLG00020022574	ssb	95	53.149	Oryzias_latipes_hni
ENSSSCG00000015938	SSB	82	56.627	ENSORLG00015016592	ssb	94	54.881	Oryzias_latipes_hsok
ENSSSCG00000015938	SSB	90	54.945	ENSOMEG00000003193	ssb	94	54.856	Oryzias_melastigma
ENSSSCG00000015938	SSB	99	72.596	ENSOGAG00000029768	SSB	99	70.335	Otolemur_garnettii
ENSSSCG00000015938	SSB	98	77.387	ENSOARG00000002906	SSB	98	77.330	Ovis_aries
ENSSSCG00000015938	SSB	97	57.398	ENSPPAG00000006189	-	93	60.167	Pan_paniscus
ENSSSCG00000015938	SSB	99	62.376	ENSPPAG00000032427	-	100	84.496	Pan_paniscus
ENSSSCG00000015938	SSB	98	77.307	ENSPPAG00000042673	SSB	86	96.522	Pan_paniscus
ENSSSCG00000015938	SSB	98	78.697	ENSPPRG00000006599	SSB	97	78.571	Panthera_pardus
ENSSSCG00000015938	SSB	98	78.446	ENSPTIG00000011021	SSB	94	78.316	Panthera_tigris_altaica
ENSSSCG00000015938	SSB	98	77.307	ENSPTRG00000012620	SSB	86	96.522	Pan_troglodytes
ENSSSCG00000015938	SSB	99	58.354	ENSPTRG00000042880	-	99	58.354	Pan_troglodytes
ENSSSCG00000015938	SSB	98	55.919	ENSPANG00000034126	-	79	60.909	Papio_anubis
ENSSSCG00000015938	SSB	98	77.387	ENSPANG00000007440	SSB	85	96.522	Papio_anubis
ENSSSCG00000015938	SSB	98	53.535	ENSPANG00000031877	-	94	52.538	Papio_anubis
ENSSSCG00000015938	SSB	95	60.260	ENSPKIG00000019325	ssb	97	60.218	Paramormyrops_kingsleyae
ENSSSCG00000015938	SSB	98	64.339	ENSPSIG00000002265	SSB	92	65.337	Pelodiscus_sinensis
ENSSSCG00000015938	SSB	72	51.027	ENSPMGG00000020075	ssb	89	50.148	Periophthalmus_magnuspinnatus
ENSSSCG00000015938	SSB	82	47.720	ENSPMAG00000002982	ssb	87	46.092	Petromyzon_marinus
ENSSSCG00000015938	SSB	95	71.354	ENSPCIG00000028591	-	98	70.603	Phascolarctos_cinereus
ENSSSCG00000015938	SSB	91	53.659	ENSPFOG00000009650	ssb	92	55.285	Poecilia_formosa
ENSSSCG00000015938	SSB	82	55.120	ENSPLAG00000020498	ssb	92	55.285	Poecilia_latipinna
ENSSSCG00000015938	SSB	91	54.201	ENSPMEG00000001051	ssb	92	55.014	Poecilia_mexicana
ENSSSCG00000015938	SSB	91	53.659	ENSPREG00000003708	ssb	96	55.285	Poecilia_reticulata
ENSSSCG00000015938	SSB	98	77.638	ENSPPYG00000012919	SSB	98	77.330	Pongo_abelii
ENSSSCG00000015938	SSB	93	74.133	ENSPCAG00000010276	SSB	98	74.133	Procavia_capensis
ENSSSCG00000015938	SSB	98	72.544	ENSPCOG00000015741	-	92	89.655	Propithecus_coquereli
ENSSSCG00000015938	SSB	98	65.829	ENSPCOG00000023189	-	98	65.743	Propithecus_coquereli
ENSSSCG00000015938	SSB	87	79.885	ENSPVAG00000006615	SSB	98	79.885	Pteropus_vampyrus
ENSSSCG00000015938	SSB	96	53.077	ENSPNYG00000006444	ssb	98	51.070	Pundamilia_nyererei
ENSSSCG00000015938	SSB	80	57.231	ENSPNAG00000011708	ssb	89	55.586	Pygocentrus_nattereri
ENSSSCG00000015938	SSB	99	72.182	ENSRNOG00000007998	Ssb	99	71.635	Rattus_norvegicus
ENSSSCG00000015938	SSB	99	73.020	ENSRNOG00000011606	AABR07061825.1	99	71.535	Rattus_norvegicus
ENSSSCG00000015938	SSB	87	68.169	ENSRBIG00000041608	-	96	66.949	Rhinopithecus_bieti
ENSSSCG00000015938	SSB	98	64.428	ENSRBIG00000041972	SSB	88	96.522	Rhinopithecus_bieti
ENSSSCG00000015938	SSB	89	64.426	ENSRBIG00000041232	-	84	81.955	Rhinopithecus_bieti
ENSSSCG00000015938	SSB	98	52.764	ENSRBIG00000029918	-	98	52.393	Rhinopithecus_bieti
ENSSSCG00000015938	SSB	97	64.286	ENSRROG00000031684	-	86	82.877	Rhinopithecus_roxellana
ENSSSCG00000015938	SSB	98	61.558	ENSRROG00000007149	-	98	60.957	Rhinopithecus_roxellana
ENSSSCG00000015938	SSB	87	72.113	ENSRROG00000034102	-	96	67.436	Rhinopithecus_roxellana
ENSSSCG00000015938	SSB	98	77.638	ENSRROG00000040346	SSB	85	96.522	Rhinopithecus_roxellana
ENSSSCG00000015938	SSB	98	77.889	ENSSBOG00000027204	SSB	86	96.522	Saimiri_boliviensis_boliviensis
ENSSSCG00000015938	SSB	92	72.507	ENSSHAG00000018062	SSB	98	70.352	Sarcophilus_harrisii
ENSSSCG00000015938	SSB	94	59.474	ENSSFOG00015000550	ssb	94	61.198	Scleropages_formosus
ENSSSCG00000015938	SSB	96	50.130	ENSSMAG00000013885	ssb	98	52.703	Scophthalmus_maximus
ENSSSCG00000015938	SSB	93	53.581	ENSSDUG00000020117	ssb	94	54.642	Seriola_dumerili
ENSSSCG00000015938	SSB	93	51.475	ENSSLDG00000002525	ssb	94	51.475	Seriola_lalandi_dorsalis
ENSSSCG00000015938	SSB	93	68.267	ENSSARG00000007747	SSB	98	68.267	Sorex_araneus
ENSSSCG00000015938	SSB	98	67.920	ENSSPUG00000012112	SSB	91	71.003	Sphenodon_punctatus
ENSSSCG00000015938	SSB	94	52.895	ENSSPAG00000005696	ssb	99	53.385	Stegastes_partitus
ENSSSCG00000015938	SSB	92	68.022	ENSTGUG00000007942	SSB	90	68.835	Taeniopygia_guttata
ENSSSCG00000015938	SSB	93	52.800	ENSTRUG00000017839	ssb	94	52.800	Takifugu_rubripes
ENSSSCG00000015938	SSB	91	54.201	ENSTNIG00000000915	ssb	91	57.143	Tetraodon_nigroviridis
ENSSSCG00000015938	SSB	81	96.522	ENSTBEG00000009056	SSB	80	96.522	Tupaia_belangeri
ENSSSCG00000015938	SSB	98	77.078	ENSTTRG00000002152	SSB	98	76.515	Tursiops_truncatus
ENSSSCG00000015938	SSB	92	81.622	ENSUAMG00000027833	SSB	97	81.030	Ursus_americanus
ENSSSCG00000015938	SSB	98	78.947	ENSUMAG00000013907	SSB	98	78.392	Ursus_maritimus
ENSSSCG00000015938	SSB	98	78.141	ENSVPAG00000007183	SSB	98	77.582	Vicugna_pacos
ENSSSCG00000015938	SSB	98	78.446	ENSVVUG00000016573	SSB	76	77.889	Vulpes_vulpes
ENSSSCG00000015938	SSB	91	59.290	ENSXETG00000025402	ssb	86	59.290	Xenopus_tropicalis
ENSSSCG00000015938	SSB	91	51.892	ENSXCOG00000019109	ssb	93	60.156	Xiphophorus_couchianus
ENSSSCG00000015938	SSB	82	55.422	ENSXMAG00000004888	ssb	91	54.743	Xiphophorus_maculatus