EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000016075 (Gene tree)
Gene ID: 100157887
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 146063 bases
Position: chr15:101191854-101337916
Accession: 100157887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000040230	SF3b1	PF08920.10	5.5e-47	1	1
ENSSSCP00000031130	SF3b1	PF08920.10	5.7e-47	1	1
ENSSSCP00000047792	SF3b1	PF08920.10	5.7e-47	1	1
ENSSSCP00000048653	SF3b1	PF08920.10	5.7e-47	1	1
ENSSSCP00000050357	SF3b1	PF08920.10	5.7e-47	1	1
ENSSSCP00000017031	SF3b1	PF08920.10	6.1e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000017503	SF3B1-201	3825	-	ENSSSCP00000017031	1223 (aa)	-	F1SMZ9
ENSSSCT00000054674	SF3B1-205	6272	-	ENSSSCP00000031130	1158 (aa)	-	A0A286ZHW0
ENSSSCT00000055542	SF3B1-204	7806	XM_021075514	ENSSSCP00000047792	1158 (aa)	XP_020931173	A0A286ZHW0
ENSSSCT00000058408	SF3B1-206	5867	-	ENSSSCP00000058834	146 (aa)	-	A0A287BQW4
ENSSSCT00000048286	SF3B1-203	8304	XM_021075515	ENSSSCP00000048653	1158 (aa)	XP_020931174	A0A286ZHW0
ENSSSCT00000059157	SF3B1-207	3453	XM_001928794	ENSSSCP00000040230	1099 (aa)	XP_001928829	A0A287A8G7
ENSSSCT00000046500	SF3B1-202	8010	-	ENSSSCP00000050357	1158 (aa)	-	A0A286ZHW0

Gene Model

Click here to download ENSSSCG00000016075's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000016075's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000016075	SF3B1	100	100.000	ENSG00000115524	SF3B1	100	100.000	Homo_sapiens
ENSSSCG00000016075	SF3B1	100	94.953	ENSAPOG00000011894	sf3b1	95	93.462	Acanthochromis_polyacanthus
ENSSSCG00000016075	SF3B1	100	100.000	ENSAMEG00000013809	SF3B1	90	99.492	Ailuropoda_melanoleuca
ENSSSCG00000016075	SF3B1	100	94.416	ENSACIG00000020910	sf3b1	88	92.565	Amphilophus_citrinellus
ENSSSCG00000016075	SF3B1	100	95.038	ENSAOCG00000004478	sf3b1	91	93.095	Amphiprion_ocellaris
ENSSSCG00000016075	SF3B1	100	95.038	ENSAPEG00000012937	sf3b1	91	93.095	Amphiprion_percula
ENSSSCG00000016075	SF3B1	100	94.949	ENSATEG00000020435	sf3b1	91	93.256	Anabas_testudineus
ENSSSCG00000016075	SF3B1	100	99.741	ENSAPLG00000003993	SF3B1	90	98.983	Anas_platyrhynchos
ENSSSCG00000016075	SF3B1	100	99.223	ENSACAG00000009612	SF3B1	91	98.486	Anolis_carolinensis
ENSSSCG00000016075	SF3B1	100	100.000	ENSANAG00000021577	SF3B1	100	100.000	Aotus_nancymaae
ENSSSCG00000016075	SF3B1	100	94.264	ENSACLG00000023470	sf3b1	89	94.264	Astatotilapia_calliptera
ENSSSCG00000016075	SF3B1	100	95.377	ENSAMXG00000002219	sf3b1	91	93.672	Astyanax_mexicanus
ENSSSCG00000016075	SF3B1	100	99.914	ENSBTAG00000008915	SF3B1	91	99.495	Bos_taurus
ENSSSCG00000016075	SF3B1	99	70.318	WBGene00011605	sftb-1	89	70.401	Caenorhabditis_elegans
ENSSSCG00000016075	SF3B1	100	100.000	ENSCJAG00000003902	SF3B1	91	99.579	Callithrix_jacchus
ENSSSCG00000016075	SF3B1	100	100.000	ENSCAFG00000010826	SF3B1	91	99.579	Canis_familiaris
ENSSSCG00000016075	SF3B1	100	100.000	ENSCAFG00020004750	SF3B1	91	99.579	Canis_lupus_dingo
ENSSSCG00000016075	SF3B1	100	99.914	ENSCHIG00000015226	SF3B1	91	99.495	Capra_hircus
ENSSSCG00000016075	SF3B1	100	99.914	ENSTSYG00000009214	SF3B1	91	99.495	Carlito_syrichta
ENSSSCG00000016075	SF3B1	100	100.000	ENSCAPG00000006547	SF3B1	91	99.409	Cavia_aperea
ENSSSCG00000016075	SF3B1	100	100.000	ENSCPOG00000009353	SF3B1	91	99.576	Cavia_porcellus
ENSSSCG00000016075	SF3B1	100	100.000	ENSCCAG00000020506	SF3B1	91	99.579	Cebus_capucinus
ENSSSCG00000016075	SF3B1	100	100.000	ENSCATG00000035735	SF3B1	91	99.579	Cercocebus_atys
ENSSSCG00000016075	SF3B1	100	100.000	ENSCLAG00000014767	SF3B1	90	99.576	Chinchilla_lanigera
ENSSSCG00000016075	SF3B1	100	100.000	ENSCSAG00000011505	SF3B1	91	99.579	Chlorocebus_sabaeus
ENSSSCG00000016075	SF3B1	78	98.462	ENSCHOG00000009860	SF3B1	72	98.438	Choloepus_hoffmanni
ENSSSCG00000016075	SF3B1	100	99.396	ENSCPBG00000021902	SF3B1	98	99.396	Chrysemys_picta_bellii
ENSSSCG00000016075	SF3B1	81	78.060	ENSCING00000002558	-	99	78.771	Ciona_intestinalis
ENSSSCG00000016075	SF3B1	99	83.348	ENSCSAVG00000002559	-	96	75.960	Ciona_savignyi
ENSSSCG00000016075	SF3B1	100	100.000	ENSCANG00000029415	SF3B1	91	99.579	Colobus_angolensis_palliatus
ENSSSCG00000016075	SF3B1	100	100.000	ENSCGRG00001016990	Sf3b1	91	99.579	Cricetulus_griseus_chok1gshd
ENSSSCG00000016075	SF3B1	100	100.000	ENSCGRG00000005301	Sf3b1	91	99.579	Cricetulus_griseus_crigri
ENSSSCG00000016075	SF3B1	100	91.495	ENSCSEG00000003860	sf3b1	89	91.495	Cynoglossus_semilaevis
ENSSSCG00000016075	SF3B1	100	92.896	ENSCVAG00000003680	sf3b1	95	93.012	Cyprinodon_variegatus
ENSSSCG00000016075	SF3B1	100	94.949	ENSDARG00000056138	sf3b1	89	94.949	Danio_rerio
ENSSSCG00000016075	SF3B1	100	100.000	ENSDNOG00000011754	SF3B1	91	99.496	Dasypus_novemcinctus
ENSSSCG00000016075	SF3B1	100	100.000	ENSDORG00000002399	Sf3b1	92	100.000	Dipodomys_ordii
ENSSSCG00000016075	SF3B1	100	80.000	FBgn0031266	Sf3b1	89	80.000	Drosophila_melanogaster
ENSSSCG00000016075	SF3B1	98	99.351	ENSETEG00000009188	SF3B1	100	99.351	Echinops_telfairi
ENSSSCG00000016075	SF3B1	100	89.338	ENSEBUG00000004325	sf3b1	100	90.191	Eptatretus_burgeri
ENSSSCG00000016075	SF3B1	100	99.914	ENSEASG00005020159	SF3B1	89	99.495	Equus_asinus_asinus
ENSSSCG00000016075	SF3B1	100	99.914	ENSECAG00000021657	SF3B1	89	99.495	Equus_caballus
ENSSSCG00000016075	SF3B1	91	100.000	ENSEEUG00000000836	SF3B1	77	100.000	Erinaceus_europaeus
ENSSSCG00000016075	SF3B1	100	94.048	ENSELUG00000005977	sf3b1	90	92.479	Esox_lucius
ENSSSCG00000016075	SF3B1	100	100.000	ENSFCAG00000005038	SF3B1	91	99.579	Felis_catus
ENSSSCG00000016075	SF3B1	100	99.827	ENSFALG00000004281	SF3B1	90	98.983	Ficedula_albicollis
ENSSSCG00000016075	SF3B1	100	100.000	ENSFDAG00000017510	SF3B1	91	99.579	Fukomys_damarensis
ENSSSCG00000016075	SF3B1	100	94.949	ENSFHEG00000014333	sf3b1	89	94.949	Fundulus_heteroclitus
ENSSSCG00000016075	SF3B1	100	94.597	ENSGMOG00000006773	sf3b1	91	93.244	Gadus_morhua
ENSSSCG00000016075	SF3B1	100	99.741	ENSGALG00000008038	SF3B1	91	98.991	Gallus_gallus
ENSSSCG00000016075	SF3B1	100	94.692	ENSGAFG00000000704	sf3b1	90	94.692	Gambusia_affinis
ENSSSCG00000016075	SF3B1	100	94.931	ENSGACG00000008839	sf3b1	91	93.150	Gasterosteus_aculeatus
ENSSSCG00000016075	SF3B1	100	99.396	ENSGAGG00000017478	SF3B1	91	98.080	Gopherus_agassizii
ENSSSCG00000016075	SF3B1	100	92.367	ENSGGOG00000009264	SF3B1	91	93.559	Gorilla_gorilla
ENSSSCG00000016075	SF3B1	99	94.340	ENSHBUG00000007705	sf3b1	89	94.340	Haplochromis_burtoni
ENSSSCG00000016075	SF3B1	100	100.000	ENSHGLG00000008285	-	90	99.576	Heterocephalus_glaber_female
ENSSSCG00000016075	SF3B1	99	99.725	ENSHGLG00100005535	-	92	99.322	Heterocephalus_glaber_male
ENSSSCG00000016075	SF3B1	100	94.553	ENSHCOG00000016775	sf3b1	89	94.553	Hippocampus_comes
ENSSSCG00000016075	SF3B1	100	95.291	ENSIPUG00000013171	sf3b1	91	93.589	Ictalurus_punctatus
ENSSSCG00000016075	SF3B1	100	100.000	ENSSTOG00000011034	SF3B1	91	100.000	Ictidomys_tridecemlineatus
ENSSSCG00000016075	SF3B1	100	99.914	ENSJJAG00000010903	Sf3b1	91	99.574	Jaculus_jaculus
ENSSSCG00000016075	SF3B1	100	94.369	ENSKMAG00000004009	sf3b1	91	92.531	Kryptolebias_marmoratus
ENSSSCG00000016075	SF3B1	100	95.095	ENSLBEG00000022208	sf3b1	89	95.095	Labrus_bergylta
ENSSSCG00000016075	SF3B1	100	93.499	ENSLACG00000014832	SF3B1	89	93.499	Latimeria_chalumnae
ENSSSCG00000016075	SF3B1	100	96.147	ENSLOCG00000003899	sf3b1	91	94.181	Lepisosteus_oculatus
ENSSSCG00000016075	SF3B1	100	100.000	ENSLAFG00000001956	SF3B1	91	99.579	Loxodonta_africana
ENSSSCG00000016075	SF3B1	100	100.000	ENSMMUG00000022430	SF3B1	90	99.576	Macaca_mulatta
ENSSSCG00000016075	SF3B1	100	100.000	ENSMNEG00000042333	SF3B1	100	100.000	Macaca_nemestrina
ENSSSCG00000016075	SF3B1	100	93.023	ENSMLEG00000026141	SF3B1	92	93.610	Mandrillus_leucophaeus
ENSSSCG00000016075	SF3B1	100	94.863	ENSMAMG00000010241	sf3b1	91	93.256	Mastacembelus_armatus
ENSSSCG00000016075	SF3B1	100	94.264	ENSMZEG00005021254	sf3b1	89	94.264	Maylandia_zebra
ENSSSCG00000016075	SF3B1	100	99.741	ENSMGAG00000007017	SF3B1	90	99.741	Meleagris_gallopavo
ENSSSCG00000016075	SF3B1	100	95.250	ENSMAUG00000009071	Sf3b1	90	94.915	Mesocricetus_auratus
ENSSSCG00000016075	SF3B1	100	99.914	ENSMICG00000013879	SF3B1	91	99.495	Microcebus_murinus
ENSSSCG00000016075	SF3B1	100	95.078	ENSMOCG00000000455	Sf3b1	90	94.666	Microtus_ochrogaster
ENSSSCG00000016075	SF3B1	99	93.059	ENSMMOG00000000475	sf3b1	100	93.059	Mola_mola
ENSSSCG00000016075	SF3B1	100	99.655	ENSMODG00000012275	SF3B1	91	98.907	Monodelphis_domestica
ENSSSCG00000016075	SF3B1	100	94.777	ENSMALG00000017211	sf3b1	91	93.172	Monopterus_albus
ENSSSCG00000016075	SF3B1	100	100.000	MGP_CAROLIEiJ_G0014141	Sf3b1	91	99.579	Mus_caroli
ENSSSCG00000016075	SF3B1	100	100.000	ENSMUSG00000025982	Sf3b1	91	99.579	Mus_musculus
ENSSSCG00000016075	SF3B1	100	100.000	MGP_SPRETEiJ_G0014947	Sf3b1	91	99.579	Mus_spretus
ENSSSCG00000016075	SF3B1	100	100.000	ENSMPUG00000007799	SF3B1	91	99.579	Mustela_putorius_furo
ENSSSCG00000016075	SF3B1	100	98.618	ENSMLUG00000000840	SF3B1	91	98.234	Myotis_lucifugus
ENSSSCG00000016075	SF3B1	100	100.000	ENSNGAG00000021884	-	91	99.241	Nannospalax_galili
ENSSSCG00000016075	SF3B1	100	94.502	ENSNBRG00000015816	sf3b1	91	94.502	Neolamprologus_brichardi
ENSSSCG00000016075	SF3B1	100	100.000	ENSNLEG00000006861	SF3B1	91	99.579	Nomascus_leucogenys
ENSSSCG00000016075	SF3B1	71	100.000	ENSMEUG00000015848	-	60	100.000	Notamacropus_eugenii
ENSSSCG00000016075	SF3B1	100	89.637	ENSOPRG00000008596	SF3B1	89	89.637	Ochotona_princeps
ENSSSCG00000016075	SF3B1	100	100.000	ENSODEG00000011153	-	91	99.579	Octodon_degus
ENSSSCG00000016075	SF3B1	100	94.264	ENSONIG00000013758	sf3b1	89	94.264	Oreochromis_niloticus
ENSSSCG00000016075	SF3B1	94	98.985	ENSOCUG00000012722	-	96	98.985	Oryctolagus_cuniculus
ENSSSCG00000016075	SF3B1	100	94.777	ENSORLG00000020219	sf3b1	91	93.006	Oryzias_latipes
ENSSSCG00000016075	SF3B1	100	94.777	ENSORLG00020001746	sf3b1	91	93.006	Oryzias_latipes_hni
ENSSSCG00000016075	SF3B1	76	90.952	ENSORLG00015001759	sf3b1	98	90.952	Oryzias_latipes_hsok
ENSSSCG00000016075	SF3B1	100	94.777	ENSOMEG00000019231	sf3b1	91	93.012	Oryzias_melastigma
ENSSSCG00000016075	SF3B1	58	83.281	ENSOGAG00000000267	-	100	83.281	Otolemur_garnettii
ENSSSCG00000016075	SF3B1	100	99.914	ENSOARG00000015374	SF3B1	91	99.495	Ovis_aries
ENSSSCG00000016075	SF3B1	100	100.000	ENSPPAG00000035007	SF3B1	91	99.579	Pan_paniscus
ENSSSCG00000016075	SF3B1	100	100.000	ENSPPRG00000009090	SF3B1	91	99.579	Panthera_pardus
ENSSSCG00000016075	SF3B1	100	100.000	ENSPTIG00000021557	SF3B1	91	99.579	Panthera_tigris_altaica
ENSSSCG00000016075	SF3B1	100	90.448	ENSPTRG00000012771	SF3B1	91	90.203	Pan_troglodytes
ENSSSCG00000016075	SF3B1	100	100.000	ENSPANG00000013417	SF3B1	91	99.579	Papio_anubis
ENSSSCG00000016075	SF3B1	100	96.055	ENSPKIG00000000784	sf3b1	91	94.579	Paramormyrops_kingsleyae
ENSSSCG00000016075	SF3B1	100	98.014	ENSPSIG00000017222	SF3B1	90	97.455	Pelodiscus_sinensis
ENSSSCG00000016075	SF3B1	100	93.580	ENSPMGG00000004330	sf3b1	99	93.317	Periophthalmus_magnuspinnatus
ENSSSCG00000016075	SF3B1	100	100.000	ENSPEMG00000010699	Sf3b1	91	99.576	Peromyscus_maniculatus_bairdii
ENSSSCG00000016075	SF3B1	99	92.612	ENSPMAG00000001311	sf3b1	91	90.100	Petromyzon_marinus
ENSSSCG00000016075	SF3B1	100	99.655	ENSPCIG00000010642	SF3B1	91	98.823	Phascolarctos_cinereus
ENSSSCG00000016075	SF3B1	100	94.692	ENSPFOG00000000073	sf3b1	91	93.017	Poecilia_formosa
ENSSSCG00000016075	SF3B1	100	94.692	ENSPLAG00000002293	sf3b1	91	93.095	Poecilia_latipinna
ENSSSCG00000016075	SF3B1	100	94.692	ENSPMEG00000000446	sf3b1	89	93.095	Poecilia_mexicana
ENSSSCG00000016075	SF3B1	100	94.777	ENSPREG00000019652	sf3b1	91	93.095	Poecilia_reticulata
ENSSSCG00000016075	SF3B1	100	98.541	ENSPPYG00000013044	SF3B1	96	98.814	Pongo_abelii
ENSSSCG00000016075	SF3B1	100	100.000	ENSPCAG00000009292	SF3B1	91	99.411	Procavia_capensis
ENSSSCG00000016075	SF3B1	100	99.914	ENSPCOG00000024074	SF3B1	91	99.495	Propithecus_coquereli
ENSSSCG00000016075	SF3B1	100	100.000	ENSPVAG00000008302	SF3B1	91	99.579	Pteropus_vampyrus
ENSSSCG00000016075	SF3B1	100	94.264	ENSPNYG00000014939	sf3b1	89	94.264	Pundamilia_nyererei
ENSSSCG00000016075	SF3B1	100	95.291	ENSPNAG00000008288	sf3b1	91	93.589	Pygocentrus_nattereri
ENSSSCG00000016075	SF3B1	100	100.000	ENSRNOG00000013516	Sf3b1	91	99.579	Rattus_norvegicus
ENSSSCG00000016075	SF3B1	100	96.028	ENSRBIG00000026096	SF3B1	91	95.451	Rhinopithecus_bieti
ENSSSCG00000016075	SF3B1	100	100.000	ENSRROG00000031308	SF3B1	91	99.579	Rhinopithecus_roxellana
ENSSSCG00000016075	SF3B1	100	100.000	ENSSBOG00000020080	SF3B1	91	99.579	Saimiri_boliviensis_boliviensis
ENSSSCG00000016075	SF3B1	100	99.655	ENSSHAG00000017564	SF3B1	91	98.907	Sarcophilus_harrisii
ENSSSCG00000016075	SF3B1	100	95.637	ENSSFOG00015021535	sf3b1	91	94.343	Scleropages_formosus
ENSSSCG00000016075	SF3B1	99	94.364	ENSSMAG00000013977	sf3b1	91	92.301	Scophthalmus_maximus
ENSSSCG00000016075	SF3B1	100	94.863	ENSSDUG00000017422	sf3b1	91	93.006	Seriola_dumerili
ENSSSCG00000016075	SF3B1	100	94.777	ENSSLDG00000019495	sf3b1	91	92.923	Seriola_lalandi_dorsalis
ENSSSCG00000016075	SF3B1	79	100.000	ENSSARG00000007016	SF3B1	70	100.000	Sorex_araneus
ENSSSCG00000016075	SF3B1	100	99.223	ENSSPUG00000000410	SF3B1	91	98.654	Sphenodon_punctatus
ENSSSCG00000016075	SF3B1	100	95.034	ENSSPAG00000010451	sf3b1	90	93.172	Stegastes_partitus
ENSSSCG00000016075	SF3B1	100	99.655	ENSTGUG00000010553	SF3B1	91	98.907	Taeniopygia_guttata
ENSSSCG00000016075	SF3B1	100	94.521	ENSTRUG00000015534	sf3b1	91	92.756	Takifugu_rubripes
ENSSSCG00000016075	SF3B1	93	100.000	ENSTBEG00000008714	SF3B1	93	100.000	Tupaia_belangeri
ENSSSCG00000016075	SF3B1	91	100.000	ENSTTRG00000003414	SF3B1	81	100.000	Tursiops_truncatus
ENSSSCG00000016075	SF3B1	93	95.688	ENSUAMG00000018506	SF3B1	96	98.919	Ursus_americanus
ENSSSCG00000016075	SF3B1	100	100.000	ENSUMAG00000020945	SF3B1	91	99.579	Ursus_maritimus
ENSSSCG00000016075	SF3B1	100	90.846	ENSVPAG00000005798	SF3B1	91	90.664	Vicugna_pacos
ENSSSCG00000016075	SF3B1	100	100.000	ENSVVUG00000025948	SF3B1	86	99.579	Vulpes_vulpes
ENSSSCG00000016075	SF3B1	100	97.755	ENSXETG00000013339	sf3b1	91	95.966	Xenopus_tropicalis
ENSSSCG00000016075	SF3B1	100	90.768	ENSXCOG00000018086	sf3b1	91	89.065	Xiphophorus_couchianus
ENSSSCG00000016075	SF3B1	100	94.692	ENSXMAG00000007369	sf3b1	92	93.012	Xiphophorus_maculatus