EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000016395 (Gene tree)
Gene ID: 100622500
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 57820 bases
Position: chr15:774191-832010
Accession: 100622500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000017370	Rif1_N	PF12231.8	3.8e-77	1	1
ENSSSCP00000034147	Rif1_N	PF12231.8	3.9e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000055870	RIF1-201	8921	XM_003359717	ENSSSCP00000034147	2466 (aa)	XP_003359765	A0A286ZR91
ENSSSCT00000017851	RIF1-202	8724	XM_003359718	ENSSSCP00000017370	2440 (aa)	XP_003359766	F1SHX3

Gene Model

Click here to download ENSSSCG00000016395's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000016395's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000016395	RIF1	100	79.259	ENSG00000080345	RIF1	97	90.743	Homo_sapiens
ENSSSCG00000016395	RIF1	51	49.342	ENSAPOG00000011073	rif1	51	48.954	Acanthochromis_polyacanthus
ENSSSCG00000016395	RIF1	99	82.668	ENSAMEG00000008461	RIF1	100	82.547	Ailuropoda_melanoleuca
ENSSSCG00000016395	RIF1	64	50.622	ENSACIG00000017765	rif1	70	50.311	Amphilophus_citrinellus
ENSSSCG00000016395	RIF1	70	48.933	ENSAOCG00000017231	rif1	72	48.704	Amphiprion_ocellaris
ENSSSCG00000016395	RIF1	69	56.298	ENSAPEG00000013228	rif1	71	54.002	Amphiprion_percula
ENSSSCG00000016395	RIF1	64	48.339	ENSATEG00000022887	rif1	66	48.418	Anabas_testudineus
ENSSSCG00000016395	RIF1	84	67.257	ENSAPLG00000007092	RIF1	92	67.257	Anas_platyrhynchos
ENSSSCG00000016395	RIF1	86	57.429	ENSACAG00000003714	RIF1	93	57.429	Anolis_carolinensis
ENSSSCG00000016395	RIF1	100	78.131	ENSANAG00000024840	RIF1	100	78.131	Aotus_nancymaae
ENSSSCG00000016395	RIF1	51	51.266	ENSAMXG00000010910	rif1	52	51.373	Astyanax_mexicanus
ENSSSCG00000016395	RIF1	91	95.939	ENSBTAG00000021020	RIF1	100	84.500	Bos_taurus
ENSSSCG00000016395	RIF1	100	77.760	ENSCJAG00000003138	RIF1	100	77.760	Callithrix_jacchus
ENSSSCG00000016395	RIF1	100	81.408	ENSCAFG00000005670	RIF1	97	81.489	Canis_familiaris
ENSSSCG00000016395	RIF1	100	80.346	ENSCAFG00020016401	RIF1	100	80.427	Canis_lupus_dingo
ENSSSCG00000016395	RIF1	100	84.482	ENSCHIG00000020327	RIF1	100	84.482	Capra_hircus
ENSSSCG00000016395	RIF1	99	76.802	ENSTSYG00000008861	RIF1	100	76.802	Carlito_syrichta
ENSSSCG00000016395	RIF1	79	76.744	ENSCAPG00000008957	RIF1	94	75.000	Cavia_aperea
ENSSSCG00000016395	RIF1	99	70.446	ENSCPOG00000037898	RIF1	99	70.406	Cavia_porcellus
ENSSSCG00000016395	RIF1	100	77.236	ENSCCAG00000024760	RIF1	100	77.236	Cebus_capucinus
ENSSSCG00000016395	RIF1	100	79.581	ENSCATG00000033353	RIF1	100	79.581	Cercocebus_atys
ENSSSCG00000016395	RIF1	96	72.993	ENSCLAG00000001517	RIF1	99	72.815	Chinchilla_lanigera
ENSSSCG00000016395	RIF1	100	79.541	ENSCSAG00000016089	RIF1	100	79.541	Chlorocebus_sabaeus
ENSSSCG00000016395	RIF1	97	75.217	ENSCHOG00000007187	RIF1	97	75.217	Choloepus_hoffmanni
ENSSSCG00000016395	RIF1	90	67.598	ENSCPBG00000025885	RIF1	97	67.620	Chrysemys_picta_bellii
ENSSSCG00000016395	RIF1	100	78.180	ENSCANG00000028962	RIF1	100	79.125	Colobus_angolensis_palliatus
ENSSSCG00000016395	RIF1	99	70.068	ENSCGRG00001024589	Rif1	100	70.068	Cricetulus_griseus_chok1gshd
ENSSSCG00000016395	RIF1	99	71.231	ENSCGRG00000010713	Rif1	100	71.231	Cricetulus_griseus_crigri
ENSSSCG00000016395	RIF1	62	55.870	ENSCSEG00000003945	rif1	66	55.645	Cynoglossus_semilaevis
ENSSSCG00000016395	RIF1	64	47.997	ENSCVAG00000022479	rif1	73	47.921	Cyprinodon_variegatus
ENSSSCG00000016395	RIF1	70	51.691	ENSDARG00000062650	rif1	74	51.564	Danio_rerio
ENSSSCG00000016395	RIF1	99	76.568	ENSDNOG00000011194	RIF1	97	76.568	Dasypus_novemcinctus
ENSSSCG00000016395	RIF1	92	71.873	ENSETEG00000012421	RIF1	92	71.873	Echinops_telfairi
ENSSSCG00000016395	RIF1	93	94.667	ENSEASG00005023434	RIF1	99	94.667	Equus_asinus_asinus
ENSSSCG00000016395	RIF1	97	92.436	ENSECAG00000012679	RIF1	100	92.436	Equus_caballus
ENSSSCG00000016395	RIF1	62	51.481	ENSELUG00000006826	rif1	56	51.469	Esox_lucius
ENSSSCG00000016395	RIF1	100	82.602	ENSFCAG00000029742	RIF1	100	82.602	Felis_catus
ENSSSCG00000016395	RIF1	78	64.329	ENSFALG00000013874	RIF1	99	64.329	Ficedula_albicollis
ENSSSCG00000016395	RIF1	99	74.405	ENSFDAG00000006538	RIF1	99	74.083	Fukomys_damarensis
ENSSSCG00000016395	RIF1	63	50.202	ENSFHEG00000013721	rif1	67	49.292	Fundulus_heteroclitus
ENSSSCG00000016395	RIF1	55	48.859	ENSGMOG00000003517	rif1	83	52.703	Gadus_morhua
ENSSSCG00000016395	RIF1	77	66.364	ENSGALG00000012484	RIF1	89	66.667	Gallus_gallus
ENSSSCG00000016395	RIF1	62	54.237	ENSGAFG00000017196	rif1	69	53.963	Gambusia_affinis
ENSSSCG00000016395	RIF1	59	55.510	ENSGACG00000008579	rif1	65	54.618	Gasterosteus_aculeatus
ENSSSCG00000016395	RIF1	90	68.421	ENSGAGG00000012595	RIF1	97	69.299	Gopherus_agassizii
ENSSSCG00000016395	RIF1	90	91.117	ENSGGOG00000040178	RIF1	96	91.117	Gorilla_gorilla
ENSSSCG00000016395	RIF1	73	53.208	ENSHBUG00000007125	rif1	68	53.585	Haplochromis_burtoni
ENSSSCG00000016395	RIF1	95	74.383	ENSHGLG00100009807	RIF1	99	74.340	Heterocephalus_glaber_male
ENSSSCG00000016395	RIF1	63	50.040	ENSHCOG00000015943	rif1	60	49.879	Hippocampus_comes
ENSSSCG00000016395	RIF1	50	52.342	ENSIPUG00000021703	rif1	52	50.775	Ictalurus_punctatus
ENSSSCG00000016395	RIF1	100	76.732	ENSSTOG00000020712	RIF1	100	77.154	Ictidomys_tridecemlineatus
ENSSSCG00000016395	RIF1	99	68.680	ENSJJAG00000023000	Rif1	100	68.841	Jaculus_jaculus
ENSSSCG00000016395	RIF1	63	50.197	ENSKMAG00000002852	rif1	67	50.197	Kryptolebias_marmoratus
ENSSSCG00000016395	RIF1	63	51.808	ENSLBEG00000023196	rif1	59	51.730	Labrus_bergylta
ENSSSCG00000016395	RIF1	84	63.582	ENSLACG00000005425	RIF1	89	63.582	Latimeria_chalumnae
ENSSSCG00000016395	RIF1	64	53.972	ENSLOCG00000002657	rif1	85	50.613	Lepisosteus_oculatus
ENSSSCG00000016395	RIF1	99	77.469	ENSLAFG00000009796	RIF1	100	77.106	Loxodonta_africana
ENSSSCG00000016395	RIF1	100	79.581	ENSMFAG00000032233	RIF1	100	79.581	Macaca_fascicularis
ENSSSCG00000016395	RIF1	100	79.662	ENSMMUG00000008611	RIF1	100	79.662	Macaca_mulatta
ENSSSCG00000016395	RIF1	100	79.541	ENSMNEG00000031616	RIF1	100	79.541	Macaca_nemestrina
ENSSSCG00000016395	RIF1	100	79.662	ENSMLEG00000042945	RIF1	100	79.662	Mandrillus_leucophaeus
ENSSSCG00000016395	RIF1	75	49.880	ENSMAMG00000001745	rif1	76	49.880	Mastacembelus_armatus
ENSSSCG00000016395	RIF1	65	51.235	ENSMZEG00005020920	rif1	71	51.080	Maylandia_zebra
ENSSSCG00000016395	RIF1	83	61.756	ENSMGAG00000012732	RIF1	90	62.040	Meleagris_gallopavo
ENSSSCG00000016395	RIF1	95	86.908	ENSMAUG00000013158	Rif1	99	86.908	Mesocricetus_auratus
ENSSSCG00000016395	RIF1	100	81.467	ENSMICG00000046127	RIF1	100	81.467	Microcebus_murinus
ENSSSCG00000016395	RIF1	99	69.653	ENSMOCG00000009381	Rif1	100	69.653	Microtus_ochrogaster
ENSSSCG00000016395	RIF1	63	49.515	ENSMMOG00000006519	rif1	64	49.515	Mola_mola
ENSSSCG00000016395	RIF1	100	59.785	ENSMODG00000003703	RIF1	100	59.618	Monodelphis_domestica
ENSSSCG00000016395	RIF1	58	52.462	ENSMALG00000016759	rif1	67	52.878	Monopterus_albus
ENSSSCG00000016395	RIF1	99	69.141	MGP_CAROLIEiJ_G0023555	Rif1	100	69.221	Mus_caroli
ENSSSCG00000016395	RIF1	99	69.317	ENSMUSG00000036202	Rif1	100	69.398	Mus_musculus
ENSSSCG00000016395	RIF1	99	68.430	MGP_PahariEiJ_G0025006	Rif1	100	68.470	Mus_pahari
ENSSSCG00000016395	RIF1	99	69.370	MGP_SPRETEiJ_G0024476	Rif1	100	69.370	Mus_spretus
ENSSSCG00000016395	RIF1	100	81.426	ENSMPUG00000000371	RIF1	100	81.426	Mustela_putorius_furo
ENSSSCG00000016395	RIF1	90	79.839	ENSMLUG00000003376	RIF1	100	79.839	Myotis_lucifugus
ENSSSCG00000016395	RIF1	100	72.621	ENSNGAG00000009268	Rif1	100	72.610	Nannospalax_galili
ENSSSCG00000016395	RIF1	86	43.048	ENSNBRG00000014257	rif1	80	49.503	Neolamprologus_brichardi
ENSSSCG00000016395	RIF1	100	78.566	ENSNLEG00000010955	RIF1	100	79.011	Nomascus_leucogenys
ENSSSCG00000016395	RIF1	77	78.027	ENSMEUG00000007601	-	84	78.027	Notamacropus_eugenii
ENSSSCG00000016395	RIF1	99	71.302	ENSODEG00000003950	RIF1	99	71.400	Octodon_degus
ENSSSCG00000016395	RIF1	75	45.937	ENSONIG00000013657	rif1	64	49.885	Oreochromis_niloticus
ENSSSCG00000016395	RIF1	83	74.765	ENSOANG00000006078	-	85	74.765	Ornithorhynchus_anatinus
ENSSSCG00000016395	RIF1	100	76.238	ENSOCUG00000017435	RIF1	100	76.269	Oryctolagus_cuniculus
ENSSSCG00000016395	RIF1	63	49.322	ENSORLG00020001302	rif1	68	49.161	Oryzias_latipes_hni
ENSSSCG00000016395	RIF1	62	49.561	ENSORLG00015000009	rif1	67	48.742	Oryzias_latipes_hsok
ENSSSCG00000016395	RIF1	62	49.436	ENSOMEG00000021513	rif1	67	49.281	Oryzias_melastigma
ENSSSCG00000016395	RIF1	99	77.679	ENSOGAG00000006141	RIF1	99	77.639	Otolemur_garnettii
ENSSSCG00000016395	RIF1	100	84.851	ENSOARG00000008930	RIF1	100	84.851	Ovis_aries
ENSSSCG00000016395	RIF1	100	79.541	ENSPPAG00000023754	RIF1	100	79.541	Pan_paniscus
ENSSSCG00000016395	RIF1	100	82.367	ENSPPRG00000003618	RIF1	100	82.367	Panthera_pardus
ENSSSCG00000016395	RIF1	100	82.528	ENSPTIG00000020652	RIF1	100	82.528	Panthera_tigris_altaica
ENSSSCG00000016395	RIF1	100	79.541	ENSPTRG00000012534	RIF1	100	79.541	Pan_troglodytes
ENSSSCG00000016395	RIF1	100	79.783	ENSPANG00000008525	RIF1	100	79.783	Papio_anubis
ENSSSCG00000016395	RIF1	62	52.636	ENSPKIG00000004267	rif1	67	52.771	Paramormyrops_kingsleyae
ENSSSCG00000016395	RIF1	66	46.462	ENSPMGG00000016141	rif1	79	45.242	Periophthalmus_magnuspinnatus
ENSSSCG00000016395	RIF1	99	71.154	ENSPEMG00000000446	Rif1	99	71.154	Peromyscus_maniculatus_bairdii
ENSSSCG00000016395	RIF1	56	51.801	ENSPFOG00000000554	-	67	50.723	Poecilia_formosa
ENSSSCG00000016395	RIF1	63	51.554	ENSPFOG00000017804	rif1	69	50.704	Poecilia_formosa
ENSSSCG00000016395	RIF1	65	50.628	ENSPLAG00000017945	rif1	72	50.392	Poecilia_latipinna
ENSSSCG00000016395	RIF1	64	51.176	ENSPREG00000018052	rif1	66	53.860	Poecilia_reticulata
ENSSSCG00000016395	RIF1	100	79.340	ENSPPYG00000012846	RIF1	100	79.783	Pongo_abelii
ENSSSCG00000016395	RIF1	80	87.879	ENSPCAG00000009032	RIF1	83	84.314	Procavia_capensis
ENSSSCG00000016395	RIF1	100	81.587	ENSPCOG00000027888	RIF1	100	81.587	Propithecus_coquereli
ENSSSCG00000016395	RIF1	93	90.669	ENSPVAG00000014276	RIF1	95	90.669	Pteropus_vampyrus
ENSSSCG00000016395	RIF1	64	49.451	ENSPNYG00000012940	rif1	69	49.099	Pundamilia_nyererei
ENSSSCG00000016395	RIF1	51	52.060	ENSPNAG00000016685	rif1	52	52.003	Pygocentrus_nattereri
ENSSSCG00000016395	RIF1	99	68.720	ENSRNOG00000054901	Rif1	100	68.478	Rattus_norvegicus
ENSSSCG00000016395	RIF1	100	78.453	ENSRBIG00000003704	RIF1	100	78.896	Rhinopithecus_bieti
ENSSSCG00000016395	RIF1	100	79.340	ENSRROG00000028206	RIF1	100	79.783	Rhinopithecus_roxellana
ENSSSCG00000016395	RIF1	100	74.194	ENSSBOG00000029530	RIF1	100	74.113	Saimiri_boliviensis_boliviensis
ENSSSCG00000016395	RIF1	62	53.560	ENSSFOG00015021539	rif1	69	53.441	Scleropages_formosus
ENSSSCG00000016395	RIF1	62	51.584	ENSSDUG00000015632	rif1	68	50.629	Seriola_dumerili
ENSSSCG00000016395	RIF1	50	51.549	ENSSLDG00000019531	rif1	51	50.194	Seriola_lalandi_dorsalis
ENSSSCG00000016395	RIF1	61	83.051	ENSSARG00000007161	-	62	83.051	Sorex_araneus
ENSSSCG00000016395	RIF1	92	69.461	ENSSPUG00000003062	RIF1	99	69.461	Sphenodon_punctatus
ENSSSCG00000016395	RIF1	52	57.938	ENSSPAG00000018359	rif1	79	57.938	Stegastes_partitus
ENSSSCG00000016395	RIF1	63	50.438	ENSTRUG00000015808	rif1	69	50.079	Takifugu_rubripes
ENSSSCG00000016395	RIF1	66	50.720	ENSTNIG00000011538	rif1	70	50.432	Tetraodon_nigroviridis
ENSSSCG00000016395	RIF1	83	92.405	ENSTBEG00000016082	RIF1	82	92.405	Tupaia_belangeri
ENSSSCG00000016395	RIF1	100	87.535	ENSTTRG00000011190	RIF1	100	87.535	Tursiops_truncatus
ENSSSCG00000016395	RIF1	86	90.385	ENSUAMG00000026385	RIF1	97	90.385	Ursus_americanus
ENSSSCG00000016395	RIF1	96	90.068	ENSUMAG00000000337	RIF1	99	90.068	Ursus_maritimus
ENSSSCG00000016395	RIF1	100	83.777	ENSVPAG00000002162	RIF1	100	83.877	Vicugna_pacos
ENSSSCG00000016395	RIF1	100	80.998	ENSVVUG00000011293	RIF1	100	80.998	Vulpes_vulpes
ENSSSCG00000016395	RIF1	97	58.713	ENSXETG00000004530	rif1	99	58.713	Xenopus_tropicalis
ENSSSCG00000016395	RIF1	65	48.151	ENSXMAG00000000506	rif1	66	48.110	Xiphophorus_maculatus