EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000016590 (Gene tree)
Gene ID: 100521760
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 392145 bases
Position: chr18:20261473-20653617
Accession: 100521760
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000017574	TUDOR	PF00567.24	9.5e-28	1	1
ENSSSCP00000017574	SNase	PF00565.17	1.3e-68	1	5
ENSSSCP00000017574	SNase	PF00565.17	1.3e-68	2	5
ENSSSCP00000017574	SNase	PF00565.17	1.3e-68	3	5
ENSSSCP00000017574	SNase	PF00565.17	1.3e-68	4	5
ENSSSCP00000017574	SNase	PF00565.17	1.3e-68	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000018062	SND1-201	3532	XM_021078633	ENSSSCP00000017574	910 (aa)	XP_020934292	F1SML4

Gene Model

Click here to download ENSSSCG00000016590's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000016590's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000016590	SND1	100	98.681	ENSG00000197157	SND1	100	98.681	Homo_sapiens
ENSSSCG00000016590	SND1	100	83.553	ENSAPOG00000017599	snd1	99	84.427	Acanthochromis_polyacanthus
ENSSSCG00000016590	SND1	100	98.575	ENSAMEG00000004664	SND1	94	98.575	Ailuropoda_melanoleuca
ENSSSCG00000016590	SND1	98	81.971	ENSACIG00000003551	snd1	99	81.849	Amphilophus_citrinellus
ENSSSCG00000016590	SND1	100	83.333	ENSAOCG00000014166	snd1	99	84.205	Amphiprion_ocellaris
ENSSSCG00000016590	SND1	100	83.333	ENSAPEG00000007067	snd1	99	84.205	Amphiprion_percula
ENSSSCG00000016590	SND1	98	82.793	ENSATEG00000018475	snd1	88	84.036	Anabas_testudineus
ENSSSCG00000016590	SND1	100	98.901	ENSANAG00000034463	SND1	100	98.901	Aotus_nancymaae
ENSSSCG00000016590	SND1	99	83.187	ENSACLG00000022897	snd1	99	84.187	Astatotilapia_calliptera
ENSSSCG00000016590	SND1	99	84.378	ENSAMXG00000016318	snd1	98	84.967	Astyanax_mexicanus
ENSSSCG00000016590	SND1	100	98.681	ENSBTAG00000010692	SND1	100	98.681	Bos_taurus
ENSSSCG00000016590	SND1	98	46.762	WBGene00006626	tsn-1	98	47.201	Caenorhabditis_elegans
ENSSSCG00000016590	SND1	100	98.681	ENSCJAG00000017668	SND1	100	98.681	Callithrix_jacchus
ENSSSCG00000016590	SND1	100	98.901	ENSCAFG00000001700	SND1	100	98.901	Canis_familiaris
ENSSSCG00000016590	SND1	100	98.901	ENSCAFG00020021639	SND1	100	98.901	Canis_lupus_dingo
ENSSSCG00000016590	SND1	100	99.011	ENSCHIG00000023390	SND1	100	99.011	Capra_hircus
ENSSSCG00000016590	SND1	70	98.592	ENSTSYG00000004979	SND1	96	98.592	Carlito_syrichta
ENSSSCG00000016590	SND1	99	84.667	ENSCAPG00000010677	SND1	98	84.710	Cavia_aperea
ENSSSCG00000016590	SND1	100	97.912	ENSCPOG00000006251	SND1	100	97.912	Cavia_porcellus
ENSSSCG00000016590	SND1	100	99.011	ENSCCAG00000036847	SND1	100	99.011	Cebus_capucinus
ENSSSCG00000016590	SND1	100	98.901	ENSCATG00000035214	SND1	100	98.901	Cercocebus_atys
ENSSSCG00000016590	SND1	100	98.352	ENSCLAG00000011796	SND1	100	98.352	Chinchilla_lanigera
ENSSSCG00000016590	SND1	100	98.901	ENSCSAG00000010182	SND1	100	98.901	Chlorocebus_sabaeus
ENSSSCG00000016590	SND1	77	91.176	ENSCHOG00000002218	SND1	86	91.176	Choloepus_hoffmanni
ENSSSCG00000016590	SND1	100	91.978	ENSCPBG00000018094	SND1	98	92.937	Chrysemys_picta_bellii
ENSSSCG00000016590	SND1	98	57.032	ENSCING00000000524	-	98	57.032	Ciona_intestinalis
ENSSSCG00000016590	SND1	99	57.976	ENSCSAVG00000008807	-	99	58.122	Ciona_savignyi
ENSSSCG00000016590	SND1	100	98.901	ENSCANG00000035119	SND1	100	98.901	Colobus_angolensis_palliatus
ENSSSCG00000016590	SND1	100	96.923	ENSCGRG00001022514	Snd1	100	96.923	Cricetulus_griseus_chok1gshd
ENSSSCG00000016590	SND1	97	96.946	ENSCGRG00000012277	Snd1	99	96.946	Cricetulus_griseus_crigri
ENSSSCG00000016590	SND1	98	84.004	ENSCSEG00000008661	snd1	98	84.004	Cynoglossus_semilaevis
ENSSSCG00000016590	SND1	100	83.882	ENSCVAG00000010316	snd1	100	83.563	Cyprinodon_variegatus
ENSSSCG00000016590	SND1	100	84.337	ENSDARG00000006766	snd1	97	87.050	Danio_rerio
ENSSSCG00000016590	SND1	97	96.054	ENSDNOG00000006795	SND1	100	96.054	Dasypus_novemcinctus
ENSSSCG00000016590	SND1	100	98.352	ENSDORG00000000336	Snd1	100	98.352	Dipodomys_ordii
ENSSSCG00000016590	SND1	98	50.595	FBgn0035121	Tudor-SN	98	50.704	Drosophila_melanogaster
ENSSSCG00000016590	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSSSCG00000016590	SND1	60	67.027	ENSEBUG00000014201	-	84	74.863	Eptatretus_burgeri
ENSSSCG00000016590	SND1	100	97.300	ENSEASG00005008513	SND1	100	97.300	Equus_asinus_asinus
ENSSSCG00000016590	SND1	100	98.901	ENSECAG00000011451	SND1	100	98.901	Equus_caballus
ENSSSCG00000016590	SND1	100	86.484	ENSEEUG00000014737	SND1	100	86.484	Erinaceus_europaeus
ENSSSCG00000016590	SND1	99	82.127	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
ENSSSCG00000016590	SND1	100	99.011	ENSFCAG00000008289	SND1	100	99.011	Felis_catus
ENSSSCG00000016590	SND1	100	98.242	ENSFDAG00000015881	SND1	100	98.242	Fukomys_damarensis
ENSSSCG00000016590	SND1	99	82.093	ENSFHEG00000004093	snd1	97	84.633	Fundulus_heteroclitus
ENSSSCG00000016590	SND1	64	75.141	ENSGMOG00000018932	snd1	64	75.141	Gadus_morhua
ENSSSCG00000016590	SND1	100	83.991	ENSGAFG00000008421	snd1	99	84.893	Gambusia_affinis
ENSSSCG00000016590	SND1	100	53.746	ENSGACG00000019793	snd1	98	54.204	Gasterosteus_aculeatus
ENSSSCG00000016590	SND1	100	98.901	ENSGGOG00000009614	SND1	100	98.901	Gorilla_gorilla
ENSSSCG00000016590	SND1	99	83.700	ENSHBUG00000019135	snd1	99	84.187	Haplochromis_burtoni
ENSSSCG00000016590	SND1	100	97.912	ENSHGLG00000003618	SND1	100	97.912	Heterocephalus_glaber_female
ENSSSCG00000016590	SND1	99	97.459	ENSHGLG00100012449	SND1	100	97.459	Heterocephalus_glaber_male
ENSSSCG00000016590	SND1	100	82.675	ENSHCOG00000005266	snd1	98	83.893	Hippocampus_comes
ENSSSCG00000016590	SND1	100	82.713	ENSIPUG00000013279	snd1	98	83.742	Ictalurus_punctatus
ENSSSCG00000016590	SND1	100	98.352	ENSSTOG00000002140	SND1	100	98.352	Ictidomys_tridecemlineatus
ENSSSCG00000016590	SND1	100	98.791	ENSJJAG00000009561	Snd1	100	98.791	Jaculus_jaculus
ENSSSCG00000016590	SND1	100	83.772	ENSKMAG00000016997	snd1	98	84.787	Kryptolebias_marmoratus
ENSSSCG00000016590	SND1	100	84.732	ENSLBEG00000013563	snd1	99	83.315	Labrus_bergylta
ENSSSCG00000016590	SND1	99	85.557	ENSLOCG00000015537	snd1	98	85.557	Lepisosteus_oculatus
ENSSSCG00000016590	SND1	100	98.132	ENSLAFG00000009696	SND1	100	98.132	Loxodonta_africana
ENSSSCG00000016590	SND1	100	98.901	ENSMFAG00000038114	SND1	100	98.901	Macaca_fascicularis
ENSSSCG00000016590	SND1	100	98.901	ENSMMUG00000015432	SND1	100	98.901	Macaca_mulatta
ENSSSCG00000016590	SND1	100	98.901	ENSMNEG00000039808	SND1	100	98.901	Macaca_nemestrina
ENSSSCG00000016590	SND1	100	98.791	ENSMLEG00000029040	SND1	100	98.791	Mandrillus_leucophaeus
ENSSSCG00000016590	SND1	99	83.572	ENSMAMG00000011739	snd1	98	84.263	Mastacembelus_armatus
ENSSSCG00000016590	SND1	99	83.187	ENSMZEG00005005681	snd1	99	84.187	Maylandia_zebra
ENSSSCG00000016590	SND1	100	98.681	ENSMICG00000000097	SND1	100	98.681	Microcebus_murinus
ENSSSCG00000016590	SND1	100	97.802	ENSMOCG00000005040	Snd1	100	97.802	Microtus_ochrogaster
ENSSSCG00000016590	SND1	100	83.114	ENSMMOG00000001795	snd1	99	83.982	Mola_mola
ENSSSCG00000016590	SND1	99	95.764	ENSMODG00000015182	SND1	99	95.764	Monodelphis_domestica
ENSSSCG00000016590	SND1	100	83.114	ENSMALG00000012071	snd1	98	83.929	Monopterus_albus
ENSSSCG00000016590	SND1	100	97.363	MGP_CAROLIEiJ_G0028159	Snd1	100	97.363	Mus_caroli
ENSSSCG00000016590	SND1	100	97.143	ENSMUSG00000001424	Snd1	100	97.143	Mus_musculus
ENSSSCG00000016590	SND1	100	97.363	MGP_PahariEiJ_G0021917	Snd1	100	97.639	Mus_pahari
ENSSSCG00000016590	SND1	100	97.363	MGP_SPRETEiJ_G0029159	Snd1	100	97.363	Mus_spretus
ENSSSCG00000016590	SND1	100	98.352	ENSMPUG00000006545	SND1	100	98.352	Mustela_putorius_furo
ENSSSCG00000016590	SND1	97	96.983	ENSMLUG00000017130	SND1	99	96.983	Myotis_lucifugus
ENSSSCG00000016590	SND1	100	97.692	ENSNGAG00000011186	Snd1	100	97.692	Nannospalax_galili
ENSSSCG00000016590	SND1	99	83.077	ENSNBRG00000006681	snd1	99	84.076	Neolamprologus_brichardi
ENSSSCG00000016590	SND1	100	98.791	ENSNLEG00000012263	SND1	100	98.870	Nomascus_leucogenys
ENSSSCG00000016590	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSSSCG00000016590	SND1	100	98.242	ENSODEG00000011502	SND1	100	98.242	Octodon_degus
ENSSSCG00000016590	SND1	99	83.077	ENSONIG00000011481	snd1	96	84.076	Oreochromis_niloticus
ENSSSCG00000016590	SND1	98	94.369	ENSOANG00000000817	SND1	99	93.757	Ornithorhynchus_anatinus
ENSSSCG00000016590	SND1	100	97.582	ENSOCUG00000001620	SND1	100	97.582	Oryctolagus_cuniculus
ENSSSCG00000016590	SND1	98	83.799	ENSORLG00000015201	snd1	98	83.799	Oryzias_latipes
ENSSSCG00000016590	SND1	98	83.911	ENSORLG00020013991	snd1	98	83.911	Oryzias_latipes_hni
ENSSSCG00000016590	SND1	98	83.911	ENSORLG00015012436	snd1	98	83.911	Oryzias_latipes_hsok
ENSSSCG00000016590	SND1	100	83.224	ENSOMEG00000006406	snd1	98	84.452	Oryzias_melastigma
ENSSSCG00000016590	SND1	100	98.465	ENSOGAG00000013356	SND1	94	98.465	Otolemur_garnettii
ENSSSCG00000016590	SND1	97	96.045	ENSOARG00000002149	SND1	100	96.045	Ovis_aries
ENSSSCG00000016590	SND1	100	98.791	ENSPPAG00000042947	SND1	100	98.791	Pan_paniscus
ENSSSCG00000016590	SND1	100	99.011	ENSPPRG00000004494	SND1	100	99.011	Panthera_pardus
ENSSSCG00000016590	SND1	100	98.901	ENSPTIG00000014214	SND1	100	98.901	Panthera_tigris_altaica
ENSSSCG00000016590	SND1	100	98.791	ENSPTRG00000023911	SND1	100	98.791	Pan_troglodytes
ENSSSCG00000016590	SND1	97	98.869	ENSPANG00000011997	SND1	99	98.869	Papio_anubis
ENSSSCG00000016590	SND1	99	81.367	ENSPKIG00000023494	snd1	98	81.687	Paramormyrops_kingsleyae
ENSSSCG00000016590	SND1	92	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSSSCG00000016590	SND1	100	97.692	ENSPEMG00000010240	Snd1	100	97.692	Peromyscus_maniculatus_bairdii
ENSSSCG00000016590	SND1	97	73.672	ENSPMAG00000007915	-	99	73.672	Petromyzon_marinus
ENSSSCG00000016590	SND1	99	96.210	ENSPCIG00000011561	SND1	99	96.210	Phascolarctos_cinereus
ENSSSCG00000016590	SND1	100	83.443	ENSPFOG00000001557	snd1	99	84.316	Poecilia_formosa
ENSSSCG00000016590	SND1	100	83.443	ENSPLAG00000018459	snd1	96	84.316	Poecilia_latipinna
ENSSSCG00000016590	SND1	100	83.882	ENSPMEG00000006803	snd1	99	84.761	Poecilia_mexicana
ENSSSCG00000016590	SND1	100	83.772	ENSPREG00000002189	snd1	99	84.650	Poecilia_reticulata
ENSSSCG00000016590	SND1	93	98.635	ENSPPYG00000017972	SND1	100	98.635	Pongo_abelii
ENSSSCG00000016590	SND1	100	86.703	ENSPCAG00000011305	SND1	99	86.622	Procavia_capensis
ENSSSCG00000016590	SND1	100	98.681	ENSPCOG00000026791	SND1	100	98.681	Propithecus_coquereli
ENSSSCG00000016590	SND1	100	97.033	ENSPVAG00000013945	SND1	100	97.033	Pteropus_vampyrus
ENSSSCG00000016590	SND1	99	83.187	ENSPNYG00000000932	snd1	99	84.187	Pundamilia_nyererei
ENSSSCG00000016590	SND1	100	83.370	ENSPNAG00000001206	snd1	98	84.333	Pygocentrus_nattereri
ENSSSCG00000016590	SND1	99	97.026	ENSRNOG00000031173	Snd1	99	97.026	Rattus_norvegicus
ENSSSCG00000016590	SND1	70	98.684	ENSRBIG00000027782	-	93	98.859	Rhinopithecus_bieti
ENSSSCG00000016590	SND1	100	98.901	ENSRROG00000033020	SND1	100	98.901	Rhinopithecus_roxellana
ENSSSCG00000016590	SND1	100	98.901	ENSSBOG00000032461	SND1	100	98.901	Saimiri_boliviensis_boliviensis
ENSSSCG00000016590	SND1	98	92.793	ENSSHAG00000015359	SND1	100	92.793	Sarcophilus_harrisii
ENSSSCG00000016590	SND1	100	82.155	ENSSFOG00015001103	snd1	98	83.241	Scleropages_formosus
ENSSSCG00000016590	SND1	98	83.557	ENSSMAG00000001932	snd1	93	83.296	Scophthalmus_maximus
ENSSSCG00000016590	SND1	100	83.443	ENSSDUG00000002699	snd1	92	84.316	Seriola_dumerili
ENSSSCG00000016590	SND1	100	76.206	ENSSLDG00000001950	snd1	98	76.974	Seriola_lalandi_dorsalis
ENSSSCG00000016590	SND1	86	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSSSCG00000016590	SND1	73	87.478	ENSSPUG00000017586	SND1	96	87.478	Sphenodon_punctatus
ENSSSCG00000016590	SND1	75	84.264	ENSSPAG00000021398	snd1	96	86.387	Stegastes_partitus
ENSSSCG00000016590	SND1	99	83.755	ENSTRUG00000014067	snd1	98	83.669	Takifugu_rubripes
ENSSSCG00000016590	SND1	100	83.224	ENSTNIG00000011019	snd1	98	84.228	Tetraodon_nigroviridis
ENSSSCG00000016590	SND1	93	92.807	ENSTBEG00000003999	SND1	100	92.807	Tupaia_belangeri
ENSSSCG00000016590	SND1	100	94.066	ENSTTRG00000006059	SND1	100	94.066	Tursiops_truncatus
ENSSSCG00000016590	SND1	71	89.091	ENSUAMG00000002820	-	86	88.978	Ursus_americanus
ENSSSCG00000016590	SND1	91	99.430	ENSUAMG00000005604	-	93	99.430	Ursus_americanus
ENSSSCG00000016590	SND1	100	98.791	ENSUMAG00000005960	SND1	100	98.791	Ursus_maritimus
ENSSSCG00000016590	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSSSCG00000016590	SND1	100	98.681	ENSVVUG00000007226	SND1	100	98.681	Vulpes_vulpes
ENSSSCG00000016590	SND1	97	84.859	ENSXETG00000023043	snd1	100	84.783	Xenopus_tropicalis
ENSSSCG00000016590	SND1	92	81.235	ENSXCOG00000013629	snd1	99	81.235	Xiphophorus_couchianus
ENSSSCG00000016590	SND1	100	83.991	ENSXMAG00000011469	snd1	99	84.872	Xiphophorus_maculatus