EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000016970 (Gene tree)
Gene ID: 100170853
Gene Symbol: -
Alias: -
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 38597 bases
Position: chr16:47738777-47777373
Accession: 100170853
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000017979	SMN	PF06003.12	1.3e-106	1	1
ENSSSCP00000051681	SMN	PF06003.12	3.5e-86	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000018479	-	1313	XM_005672519	ENSSSCP00000017979	293 (aa)	XP_005672576	F1SK26
ENSSSCT00000065110	-	1190	XM_013984845	ENSSSCP00000051681	269 (aa)	XP_013840299	A0A287B5F8

Gene Model

Click here to download ENSSSCG00000016970's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000016970's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000016970	-	80	66.355	ENSSSCG00000033865	-	95	64.815
ENSSSCG00000016970	-	96	73.050	ENSSSCG00000029127	-	94	73.050

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000016970	-	99	89.384	ENSG00000205571	SMN2	99	89.384	Homo_sapiens
ENSSSCG00000016970	-	99	89.384	ENSG00000172062	SMN1	99	89.384	Homo_sapiens
ENSSSCG00000016970	-	92	53.597	ENSAPOG00000011324	smn1	94	51.986	Acanthochromis_polyacanthus
ENSSSCG00000016970	-	96	92.199	ENSAMEG00000003316	-	93	92.199	Ailuropoda_melanoleuca
ENSSSCG00000016970	-	88	51.504	ENSACIG00000019772	-	97	48.473	Amphilophus_citrinellus
ENSSSCG00000016970	-	92	52.347	ENSAOCG00000024444	smn1	94	52.708	Amphiprion_ocellaris
ENSSSCG00000016970	-	92	54.676	ENSAPEG00000016504	smn1	94	53.069	Amphiprion_percula
ENSSSCG00000016970	-	90	53.405	ENSATEG00000002182	smn1	79	53.409	Anabas_testudineus
ENSSSCG00000016970	-	74	57.789	ENSAPLG00000010912	-	97	55.779	Anas_platyrhynchos
ENSSSCG00000016970	-	93	56.475	ENSACAG00000010017	-	95	59.498	Anolis_carolinensis
ENSSSCG00000016970	-	99	84.694	ENSANAG00000032133	-	99	84.694	Aotus_nancymaae
ENSSSCG00000016970	-	92	53.430	ENSACLG00000007308	smn1	88	53.532	Astatotilapia_calliptera
ENSSSCG00000016970	-	94	47.423	ENSAMXG00000013884	smn1	97	47.569	Astyanax_mexicanus
ENSSSCG00000016970	-	96	87.589	ENSBTAG00000005743	SMN2	97	83.630	Bos_taurus
ENSSSCG00000016970	-	99	86.007	ENSCJAG00000016290	-	99	86.007	Callithrix_jacchus
ENSSSCG00000016970	-	96	91.135	ENSCAFG00000007812	SMN	97	91.135	Canis_familiaris
ENSSSCG00000016970	-	96	91.103	ENSCAFG00020019229	-	90	91.103	Canis_lupus_dingo
ENSSSCG00000016970	-	96	87.324	ENSCHIG00000015559	-	95	83.392	Capra_hircus
ENSSSCG00000016970	-	99	88.660	ENSTSYG00000012058	-	97	90.000	Carlito_syrichta
ENSSSCG00000016970	-	83	68.722	ENSCAPG00000011021	-	87	70.854	Cavia_aperea
ENSSSCG00000016970	-	99	80.471	ENSCPOG00000012328	-	97	80.556	Cavia_porcellus
ENSSSCG00000016970	-	100	80.952	ENSCPOG00000036973	-	100	79.592	Cavia_porcellus
ENSSSCG00000016970	-	99	86.254	ENSCCAG00000018127	-	99	86.254	Cebus_capucinus
ENSSSCG00000016970	-	99	88.014	ENSCATG00000037002	-	99	88.014	Cercocebus_atys
ENSSSCG00000016970	-	100	78.859	ENSCLAG00000000284	-	100	78.859	Chinchilla_lanigera
ENSSSCG00000016970	-	99	88.699	ENSCSAG00000015688	-	99	88.699	Chlorocebus_sabaeus
ENSSSCG00000016970	-	86	77.381	ENSCHOG00000007346	-	67	87.500	Choloepus_hoffmanni
ENSSSCG00000016970	-	99	62.500	ENSCPBG00000010968	-	99	62.825	Chrysemys_picta_bellii
ENSSSCG00000016970	-	99	88.660	ENSCANG00000038242	-	100	88.489	Colobus_angolensis_palliatus
ENSSSCG00000016970	-	95	82.562	ENSCANG00000033324	-	95	81.851	Colobus_angolensis_palliatus
ENSSSCG00000016970	-	100	82.935	ENSCGRG00001017959	-	97	81.915	Cricetulus_griseus_chok1gshd
ENSSSCG00000016970	-	100	68.401	ENSCGRG00001016998	-	97	67.829	Cricetulus_griseus_chok1gshd
ENSSSCG00000016970	-	100	82.935	ENSCGRG00000007698	Smn1	97	81.915	Cricetulus_griseus_crigri
ENSSSCG00000016970	-	92	48.239	ENSCSEG00000015227	smn1	97	50.883	Cynoglossus_semilaevis
ENSSSCG00000016970	-	92	53.455	ENSCVAG00000007498	smn1	94	52.364	Cyprinodon_variegatus
ENSSSCG00000016970	-	94	51.246	ENSDARG00000018494	smn1	96	49.653	Danio_rerio
ENSSSCG00000016970	-	90	87.190	ENSDNOG00000007283	-	100	87.190	Dasypus_novemcinctus
ENSSSCG00000016970	-	79	71.552	ENSDNOG00000045949	-	92	69.545	Dasypus_novemcinctus
ENSSSCG00000016970	-	100	85.130	ENSDORG00000007082	Smn1	99	85.130	Dipodomys_ordii
ENSSSCG00000016970	-	72	72.381	ENSETEG00000001406	-	89	72.283	Echinops_telfairi
ENSSSCG00000016970	-	92	37.542	ENSEBUG00000011902	smn1	50	46.207	Eptatretus_burgeri
ENSSSCG00000016970	-	96	78.445	ENSEASG00005018000	-	93	83.270	Equus_asinus_asinus
ENSSSCG00000016970	-	96	89.362	ENSECAG00000015215	-	97	89.716	Equus_caballus
ENSSSCG00000016970	-	86	82.072	ENSEEUG00000015777	-	100	82.072	Erinaceus_europaeus
ENSSSCG00000016970	-	91	56.679	ENSELUG00000018067	smn1	94	54.152	Esox_lucius
ENSSSCG00000016970	-	100	91.809	ENSFCAG00000028292	SMN	96	94.656	Felis_catus
ENSSSCG00000016970	-	89	63.258	ENSFALG00000012320	-	91	62.357	Ficedula_albicollis
ENSSSCG00000016970	-	100	81.208	ENSFDAG00000017683	-	100	81.208	Fukomys_damarensis
ENSSSCG00000016970	-	61	54.144	ENSFHEG00000018508	smn1	96	50.542	Fundulus_heteroclitus
ENSSSCG00000016970	-	95	51.613	ENSGMOG00000017279	smn1	92	47.464	Gadus_morhua
ENSSSCG00000016970	-	92	61.993	ENSGALG00000002430	SMN	95	59.630	Gallus_gallus
ENSSSCG00000016970	-	92	53.047	ENSGAFG00000009501	smn1	94	52.536	Gambusia_affinis
ENSSSCG00000016970	-	92	54.444	ENSGACG00000010584	smn1	91	51.493	Gasterosteus_aculeatus
ENSSSCG00000016970	-	94	38.916	ENSGAGG00000013639	-	56	54.237	Gopherus_agassizii
ENSSSCG00000016970	-	99	61.565	ENSGAGG00000011374	-	97	63.214	Gopherus_agassizii
ENSSSCG00000016970	-	67	87.179	ENSGGOG00000026704	-	91	87.179	Gorilla_gorilla
ENSSSCG00000016970	-	98	76.389	ENSGGOG00000003872	-	100	77.338	Gorilla_gorilla
ENSSSCG00000016970	-	91	52.399	ENSHBUG00000013987	smn1	94	54.152	Haplochromis_burtoni
ENSSSCG00000016970	-	100	78.840	ENSHGLG00000001905	-	100	78.840	Heterocephalus_glaber_female
ENSSSCG00000016970	-	100	81.544	ENSHGLG00000001018	-	96	80.488	Heterocephalus_glaber_female
ENSSSCG00000016970	-	100	81.544	ENSHGLG00100011252	-	96	80.488	Heterocephalus_glaber_male
ENSSSCG00000016970	-	96	78.292	ENSHGLG00100018676	-	100	78.292	Heterocephalus_glaber_male
ENSSSCG00000016970	-	88	51.311	ENSHCOG00000017136	smn1	87	50.000	Hippocampus_comes
ENSSSCG00000016970	-	94	51.087	ENSIPUG00000012580	smn1	86	50.725	Ictalurus_punctatus
ENSSSCG00000016970	-	95	89.568	ENSSTOG00000012288	-	100	87.410	Ictidomys_tridecemlineatus
ENSSSCG00000016970	-	59	65.517	ENSJJAG00000014853	-	89	65.714	Jaculus_jaculus
ENSSSCG00000016970	-	92	51.220	ENSKMAG00000007239	smn1	96	50.000	Kryptolebias_marmoratus
ENSSSCG00000016970	-	92	52.482	ENSLBEG00000022550	smn1	94	52.206	Labrus_bergylta
ENSSSCG00000016970	-	91	51.111	ENSLOCG00000011339	smn1	94	52.593	Lepisosteus_oculatus
ENSSSCG00000016970	-	100	85.522	ENSLAFG00000003425	-	93	86.364	Loxodonta_africana
ENSSSCG00000016970	-	99	84.247	ENSMFAG00000008812	-	99	84.589	Macaca_fascicularis
ENSSSCG00000016970	-	99	89.041	ENSMFAG00000031523	SMN1	99	89.041	Macaca_fascicularis
ENSSSCG00000016970	-	99	89.041	ENSMMUG00000020214	SMN1	99	89.041	Macaca_mulatta
ENSSSCG00000016970	-	99	83.562	ENSMMUG00000030594	-	99	83.904	Macaca_mulatta
ENSSSCG00000016970	-	99	88.699	ENSMNEG00000035094	-	99	88.889	Macaca_nemestrina
ENSSSCG00000016970	-	82	77.376	ENSMNEG00000036423	-	83	77.934	Macaca_nemestrina
ENSSSCG00000016970	-	99	88.356	ENSMLEG00000041902	-	99	88.356	Mandrillus_leucophaeus
ENSSSCG00000016970	-	91	52.747	ENSMAMG00000011034	smn1	94	50.903	Mastacembelus_armatus
ENSSSCG00000016970	-	91	52.030	ENSMZEG00005013634	smn1	94	53.791	Maylandia_zebra
ENSSSCG00000016970	-	74	57.071	ENSMGAG00000008889	-	95	55.051	Meleagris_gallopavo
ENSSSCG00000016970	-	100	80.887	ENSMAUG00000010262	Smn1	97	80.714	Mesocricetus_auratus
ENSSSCG00000016970	-	100	75.932	ENSMICG00000034708	-	98	85.714	Microcebus_murinus
ENSSSCG00000016970	-	100	81.570	ENSMOCG00000017833	Smn1	97	81.915	Microtus_ochrogaster
ENSSSCG00000016970	-	92	47.101	ENSMMOG00000005504	smn1	93	49.446	Mola_mola
ENSSSCG00000016970	-	100	69.492	ENSMODG00000001436	-	96	69.611	Monodelphis_domestica
ENSSSCG00000016970	-	91	52.747	ENSMALG00000008025	smn1	94	51.986	Monopterus_albus
ENSSSCG00000016970	-	100	81.633	MGP_CAROLIEiJ_G0018836	Smn1	97	81.495	Mus_caroli
ENSSSCG00000016970	-	100	81.633	ENSMUSG00000021645	Smn1	97	81.495	Mus_musculus
ENSSSCG00000016970	-	100	78.498	MGP_PahariEiJ_G0015911	Smn1	97	78.929	Mus_pahari
ENSSSCG00000016970	-	100	80.952	MGP_SPRETEiJ_G0019718	Smn1	97	80.783	Mus_spretus
ENSSSCG00000016970	-	95	91.756	ENSMPUG00000014470	-	95	92.537	Mustela_putorius_furo
ENSSSCG00000016970	-	96	90.311	ENSMLUG00000010603	-	93	90.311	Myotis_lucifugus
ENSSSCG00000016970	-	100	82.253	ENSNGAG00000019833	Smn1	97	83.688	Nannospalax_galili
ENSSSCG00000016970	-	91	54.348	ENSNBRG00000023000	smn1	94	55.072	Neolamprologus_brichardi
ENSSSCG00000016970	-	99	89.384	ENSNLEG00000004454	-	99	89.384	Nomascus_leucogenys
ENSSSCG00000016970	-	84	65.502	ENSMEUG00000011393	-	99	65.198	Notamacropus_eugenii
ENSSSCG00000016970	-	86	82.609	ENSOPRG00000002015	-	100	83.004	Ochotona_princeps
ENSSSCG00000016970	-	95	81.295	ENSODEG00000015976	-	97	80.565	Octodon_degus
ENSSSCG00000016970	-	92	53.957	ENSONIG00000011799	smn1	95	54.317	Oreochromis_niloticus
ENSSSCG00000016970	-	94	64.982	ENSOANG00000001626	-	96	64.855	Ornithorhynchus_anatinus
ENSSSCG00000016970	-	100	85.714	ENSOCUG00000025183	-	97	87.405	Oryctolagus_cuniculus
ENSSSCG00000016970	-	99	80.808	ENSOCUG00000026649	-	95	83.451	Oryctolagus_cuniculus
ENSSSCG00000016970	-	100	86.007	ENSOCUG00000017097	-	100	84.983	Oryctolagus_cuniculus
ENSSSCG00000016970	-	92	50.185	ENSORLG00000010552	smn1	94	53.309	Oryzias_latipes
ENSSSCG00000016970	-	92	52.788	ENSORLG00020007936	smn1	93	52.399	Oryzias_latipes_hni
ENSSSCG00000016970	-	53	60.897	ENSORLG00015022425	smn1	94	52.574	Oryzias_latipes_hsok
ENSSSCG00000016970	-	92	51.292	ENSOMEG00000007824	smn1	94	53.875	Oryzias_melastigma
ENSSSCG00000016970	-	91	80.147	ENSOGAG00000031414	-	94	80.147	Otolemur_garnettii
ENSSSCG00000016970	-	94	85.818	ENSOARG00000005425	-	100	81.455	Ovis_aries
ENSSSCG00000016970	-	99	89.041	ENSPPAG00000036640	-	99	89.041	Pan_paniscus
ENSSSCG00000016970	-	100	91.809	ENSPPRG00000005575	-	96	94.656	Panthera_pardus
ENSSSCG00000016970	-	100	91.497	ENSPTIG00000007745	-	96	93.939	Panthera_tigris_altaica
ENSSSCG00000016970	-	99	88.136	ENSPTRG00000016955	-	99	88.475	Pan_troglodytes
ENSSSCG00000016970	-	98	83.391	ENSPANG00000000253	-	98	83.737	Papio_anubis
ENSSSCG00000016970	-	99	89.041	ENSPANG00000013601	-	99	89.041	Papio_anubis
ENSSSCG00000016970	-	91	53.597	ENSPKIG00000011096	smn1	94	53.358	Paramormyrops_kingsleyae
ENSSSCG00000016970	-	92	60.211	ENSPSIG00000014787	-	90	59.155	Pelodiscus_sinensis
ENSSSCG00000016970	-	92	48.929	ENSPMGG00000012285	smn1	94	49.430	Periophthalmus_magnuspinnatus
ENSSSCG00000016970	-	89	42.279	ENSPMAG00000005004	smn1	91	41.818	Petromyzon_marinus
ENSSSCG00000016970	-	97	70.139	ENSPCIG00000025764	-	98	69.965	Phascolarctos_cinereus
ENSSSCG00000016970	-	92	52.857	ENSPFOG00000007786	smn1	94	53.506	Poecilia_formosa
ENSSSCG00000016970	-	92	53.214	ENSPLAG00000012071	smn1	94	53.875	Poecilia_latipinna
ENSSSCG00000016970	-	92	52.857	ENSPMEG00000017085	smn1	94	53.506	Poecilia_mexicana
ENSSSCG00000016970	-	92	53.763	ENSPREG00000005824	smn1	94	53.261	Poecilia_reticulata
ENSSSCG00000016970	-	91	89.513	ENSPPYG00000015533	-	96	89.513	Pongo_abelii
ENSSSCG00000016970	-	85	56.400	ENSPPYG00000019189	-	99	56.000	Pongo_abelii
ENSSSCG00000016970	-	91	81.919	ENSPCAG00000004187	-	100	80.443	Procavia_capensis
ENSSSCG00000016970	-	89	70.943	ENSPCOG00000022307	-	100	72.830	Propithecus_coquereli
ENSSSCG00000016970	-	100	93.174	ENSPVAG00000005977	-	100	93.174	Pteropus_vampyrus
ENSSSCG00000016970	-	91	54.348	ENSPNYG00000014148	smn1	94	55.072	Pundamilia_nyererei
ENSSSCG00000016970	-	92	46.643	ENSPNAG00000014007	smn1	83	49.097	Pygocentrus_nattereri
ENSSSCG00000016970	-	100	80.272	ENSRNOG00000018067	Smn1	97	79.359	Rattus_norvegicus
ENSSSCG00000016970	-	99	88.699	ENSRBIG00000037052	-	99	88.699	Rhinopithecus_bieti
ENSSSCG00000016970	-	95	74.286	ENSRBIG00000036775	-	95	74.021	Rhinopithecus_bieti
ENSSSCG00000016970	-	99	73.379	ENSRROG00000031088	-	99	72.696	Rhinopithecus_roxellana
ENSSSCG00000016970	-	99	88.699	ENSRROG00000039399	-	99	88.699	Rhinopithecus_roxellana
ENSSSCG00000016970	-	83	80.876	ENSSBOG00000020112	-	87	81.275	Saimiri_boliviensis_boliviensis
ENSSSCG00000016970	-	99	85.223	ENSSBOG00000011665	-	99	85.911	Saimiri_boliviensis_boliviensis
ENSSSCG00000016970	-	100	69.831	ENSSHAG00000001499	-	97	70.149	Sarcophilus_harrisii
ENSSSCG00000016970	-	92	52.536	ENSSFOG00015015507	smn1	94	51.273	Scleropages_formosus
ENSSSCG00000016970	-	92	50.357	ENSSMAG00000007922	smn1	94	51.449	Scophthalmus_maximus
ENSSSCG00000016970	-	92	52.688	ENSSDUG00000018533	smn1	94	51.625	Seriola_dumerili
ENSSSCG00000016970	-	92	53.047	ENSSLDG00000021135	smn1	94	51.986	Seriola_lalandi_dorsalis
ENSSSCG00000016970	-	91	64.815	ENSSPUG00000000373	-	93	65.428	Sphenodon_punctatus
ENSSSCG00000016970	-	92	54.317	ENSSPAG00000004345	smn1	94	52.708	Stegastes_partitus
ENSSSCG00000016970	-	95	61.210	ENSTGUG00000001548	-	96	62.406	Taeniopygia_guttata
ENSSSCG00000016970	-	57	57.485	ENSTRUG00000000736	smn	95	48.905	Takifugu_rubripes
ENSSSCG00000016970	-	92	48.582	ENSTNIG00000009892	smn1	95	48.387	Tetraodon_nigroviridis
ENSSSCG00000016970	-	63	85.870	ENSTBEG00000002399	-	89	85.870	Tupaia_belangeri
ENSSSCG00000016970	-	96	85.816	ENSTTRG00000005080	-	96	86.879	Tursiops_truncatus
ENSSSCG00000016970	-	63	92.391	ENSUAMG00000024947	-	67	92.391	Ursus_americanus
ENSSSCG00000016970	-	96	92.908	ENSUMAG00000007842	-	72	92.908	Ursus_maritimus
ENSSSCG00000016970	-	91	77.528	ENSVPAG00000009887	-	96	77.154	Vicugna_pacos
ENSSSCG00000016970	-	96	91.135	ENSVVUG00000006934	-	97	91.135	Vulpes_vulpes
ENSSSCG00000016970	-	94	56.383	ENSXETG00000018189	smn2	96	56.098	Xenopus_tropicalis
ENSSSCG00000016970	-	96	33.692	ENSXETG00000004912	-	79	60.317	Xenopus_tropicalis
ENSSSCG00000016970	-	92	53.004	ENSXMAG00000001521	smn1	95	52.174	Xiphophorus_maculatus