EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000016975 (Gene tree)
Gene ID: 100519399
Gene Symbol: PTCD2
Alias: FLJ12598
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 33770 bases
Position: chr16:48604627-48638396
Accession: 100519399
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000017985	MRP-S27	PF10037.9	8.1e-11	1	1
ENSSSCP00000050874	MRP-S27	PF10037.9	4.5e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000042682	PTCD2-202	4456	XM_021076727	ENSSSCP00000050874	394 (aa)	XP_020932386	A0A287B333
ENSSSCT00000018485	PTCD2-201	4549	XM_021076726	ENSSSCP00000017985	425 (aa)	XP_020932385	F1SK11

Gene Model

Click here to download ENSSSCG00000016975's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000016975's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000016975	PTCD2	90	82.338	ENSG00000049883	PTCD2	100	82.828	Homo_sapiens
ENSSSCG00000016975	PTCD2	86	46.594	ENSAPOG00000020682	ptcd2	95	46.594	Acanthochromis_polyacanthus
ENSSSCG00000016975	PTCD2	91	81.395	ENSAMEG00000007194	PTCD2	99	81.395	Ailuropoda_melanoleuca
ENSSSCG00000016975	PTCD2	80	43.887	ENSACIG00000002053	ptcd2	100	42.693	Amphilophus_citrinellus
ENSSSCG00000016975	PTCD2	86	46.721	ENSAOCG00000006616	ptcd2	93	46.721	Amphiprion_ocellaris
ENSSSCG00000016975	PTCD2	86	46.612	ENSAPEG00000022926	ptcd2	93	46.612	Amphiprion_percula
ENSSSCG00000016975	PTCD2	83	56.657	ENSACAG00000009747	PTCD2	97	53.866	Anolis_carolinensis
ENSSSCG00000016975	PTCD2	90	83.896	ENSANAG00000029353	PTCD2	99	83.896	Aotus_nancymaae
ENSSSCG00000016975	PTCD2	86	44.809	ENSACLG00000027742	ptcd2	93	44.809	Astatotilapia_calliptera
ENSSSCG00000016975	PTCD2	82	44.669	ENSAMXG00000029404	ptcd2	92	44.669	Astyanax_mexicanus
ENSSSCG00000016975	PTCD2	90	84.896	ENSBTAG00000014675	PTCD2	100	84.896	Bos_taurus
ENSSSCG00000016975	PTCD2	90	82.597	ENSCJAG00000016364	PTCD2	99	82.597	Callithrix_jacchus
ENSSSCG00000016975	PTCD2	95	77.778	ENSCAFG00000007982	PTCD2	98	75.179	Canis_familiaris
ENSSSCG00000016975	PTCD2	81	82.948	ENSCAFG00020019147	PTCD2	97	82.948	Canis_lupus_dingo
ENSSSCG00000016975	PTCD2	90	85.677	ENSCHIG00000017118	PTCD2	100	85.677	Capra_hircus
ENSSSCG00000016975	PTCD2	90	73.506	ENSCPOG00000040168	PTCD2	100	73.506	Cavia_porcellus
ENSSSCG00000016975	PTCD2	74	76.415	ENSCCAG00000021996	-	98	76.415	Cebus_capucinus
ENSSSCG00000016975	PTCD2	90	82.338	ENSCCAG00000029389	-	99	82.338	Cebus_capucinus
ENSSSCG00000016975	PTCD2	90	80.157	ENSCATG00000019069	PTCD2	100	80.157	Cercocebus_atys
ENSSSCG00000016975	PTCD2	90	74.151	ENSCLAG00000000072	PTCD2	100	74.151	Chinchilla_lanigera
ENSSSCG00000016975	PTCD2	90	80.679	ENSCSAG00000015623	PTCD2	100	80.679	Chlorocebus_sabaeus
ENSSSCG00000016975	PTCD2	81	58.621	ENSCHOG00000010634	PTCD2	100	58.621	Choloepus_hoffmanni
ENSSSCG00000016975	PTCD2	97	49.870	ENSCPBG00000000216	PTCD2	99	54.522	Chrysemys_picta_bellii
ENSSSCG00000016975	PTCD2	90	80.519	ENSCANG00000035636	PTCD2	99	80.519	Colobus_angolensis_palliatus
ENSSSCG00000016975	PTCD2	100	70.327	ENSCGRG00001015289	Ptcd2	84	74.413	Cricetulus_griseus_chok1gshd
ENSSSCG00000016975	PTCD2	100	70.327	ENSCGRG00000006193	Ptcd2	84	74.413	Cricetulus_griseus_crigri
ENSSSCG00000016975	PTCD2	86	44.262	ENSCVAG00000001285	ptcd2	93	44.262	Cyprinodon_variegatus
ENSSSCG00000016975	PTCD2	86	44.565	ENSDARG00000035391	ptcd2	95	44.565	Danio_rerio
ENSSSCG00000016975	PTCD2	90	76.240	ENSDNOG00000008719	PTCD2	100	76.240	Dasypus_novemcinctus
ENSSSCG00000016975	PTCD2	90	75.711	ENSDORG00000004921	Ptcd2	100	75.711	Dipodomys_ordii
ENSSSCG00000016975	PTCD2	91	70.694	ENSETEG00000016542	PTCD2	100	70.694	Echinops_telfairi
ENSSSCG00000016975	PTCD2	90	84.031	ENSEASG00005018038	PTCD2	100	84.031	Equus_asinus_asinus
ENSSSCG00000016975	PTCD2	90	84.073	ENSECAG00000007022	PTCD2	99	84.073	Equus_caballus
ENSSSCG00000016975	PTCD2	90	75.000	ENSEEUG00000014031	PTCD2	99	74.611	Erinaceus_europaeus
ENSSSCG00000016975	PTCD2	87	48.257	ENSELUG00000003584	ptcd2	97	48.257	Esox_lucius
ENSSSCG00000016975	PTCD2	96	79.265	ENSFCAG00000045432	PTCD2	86	81.471	Felis_catus
ENSSSCG00000016975	PTCD2	80	49.524	ENSFALG00000010299	PTCD2	99	49.541	Ficedula_albicollis
ENSSSCG00000016975	PTCD2	90	75.457	ENSFDAG00000018461	PTCD2	100	75.457	Fukomys_damarensis
ENSSSCG00000016975	PTCD2	82	50.427	ENSGMOG00000003637	ptcd2	91	50.427	Gadus_morhua
ENSSSCG00000016975	PTCD2	83	49.008	ENSGALG00000038260	PTCD2	93	49.008	Gallus_gallus
ENSSSCG00000016975	PTCD2	90	55.699	ENSGAGG00000021952	PTCD2	99	55.699	Gopherus_agassizii
ENSSSCG00000016975	PTCD2	90	82.338	ENSGGOG00000010695	PTCD2	99	82.338	Gorilla_gorilla
ENSSSCG00000016975	PTCD2	86	44.809	ENSHBUG00000009191	ptcd2	93	44.809	Haplochromis_burtoni
ENSSSCG00000016975	PTCD2	90	76.240	ENSHGLG00000001234	PTCD2	100	76.240	Heterocephalus_glaber_female
ENSSSCG00000016975	PTCD2	90	76.240	ENSHGLG00100015419	PTCD2	100	76.240	Heterocephalus_glaber_male
ENSSSCG00000016975	PTCD2	87	45.822	ENSHCOG00000001703	ptcd2	94	45.822	Hippocampus_comes
ENSSSCG00000016975	PTCD2	76	46.440	ENSIPUG00000006080	ptcd2	91	45.845	Ictalurus_punctatus
ENSSSCG00000016975	PTCD2	89	81.675	ENSSTOG00000006596	PTCD2	99	81.675	Ictidomys_tridecemlineatus
ENSSSCG00000016975	PTCD2	90	76.762	ENSJJAG00000024388	Ptcd2	100	76.762	Jaculus_jaculus
ENSSSCG00000016975	PTCD2	83	43.909	ENSKMAG00000009329	ptcd2	91	43.909	Kryptolebias_marmoratus
ENSSSCG00000016975	PTCD2	85	44.904	ENSLBEG00000024871	ptcd2	92	44.904	Labrus_bergylta
ENSSSCG00000016975	PTCD2	84	54.213	ENSLOCG00000011122	ptcd2	93	54.213	Lepisosteus_oculatus
ENSSSCG00000016975	PTCD2	72	80.645	ENSLAFG00000004115	PTCD2	99	80.645	Loxodonta_africana
ENSSSCG00000016975	PTCD2	90	80.000	ENSMFAG00000031516	PTCD2	99	80.000	Macaca_fascicularis
ENSSSCG00000016975	PTCD2	90	79.896	ENSMNEG00000007537	PTCD2	100	79.896	Macaca_nemestrina
ENSSSCG00000016975	PTCD2	90	80.260	ENSMLEG00000031093	PTCD2	99	80.260	Mandrillus_leucophaeus
ENSSSCG00000016975	PTCD2	86	47.253	ENSMAMG00000018529	ptcd2	93	47.253	Mastacembelus_armatus
ENSSSCG00000016975	PTCD2	86	44.809	ENSMZEG00005003625	ptcd2	93	44.809	Maylandia_zebra
ENSSSCG00000016975	PTCD2	82	50.000	ENSMGAG00000005033	PTCD2	100	50.000	Meleagris_gallopavo
ENSSSCG00000016975	PTCD2	90	54.593	ENSMAUG00000020253	Ptcd2	100	54.593	Mesocricetus_auratus
ENSSSCG00000016975	PTCD2	90	80.729	ENSMICG00000004535	PTCD2	99	80.729	Microcebus_murinus
ENSSSCG00000016975	PTCD2	90	74.541	ENSMOCG00000019985	Ptcd2	100	74.541	Microtus_ochrogaster
ENSSSCG00000016975	PTCD2	90	57.812	ENSMODG00000001695	PTCD2	100	57.812	Monodelphis_domestica
ENSSSCG00000016975	PTCD2	82	48.563	ENSMALG00000022372	ptcd2	91	48.563	Monopterus_albus
ENSSSCG00000016975	PTCD2	90	71.916	MGP_CAROLIEiJ_G0018829	Ptcd2	100	71.916	Mus_caroli
ENSSSCG00000016975	PTCD2	90	71.129	ENSMUSG00000021650	Ptcd2	100	71.129	Mus_musculus
ENSSSCG00000016975	PTCD2	90	74.803	MGP_PahariEiJ_G0015904	Ptcd2	100	74.803	Mus_pahari
ENSSSCG00000016975	PTCD2	90	71.654	MGP_SPRETEiJ_G0019711	Ptcd2	100	71.654	Mus_spretus
ENSSSCG00000016975	PTCD2	90	83.029	ENSMPUG00000014401	PTCD2	100	83.029	Mustela_putorius_furo
ENSSSCG00000016975	PTCD2	91	81.959	ENSMLUG00000007374	PTCD2	100	81.959	Myotis_lucifugus
ENSSSCG00000016975	PTCD2	90	73.766	ENSNGAG00000005027	Ptcd2	100	73.766	Nannospalax_galili
ENSSSCG00000016975	PTCD2	86	45.082	ENSNBRG00000008174	ptcd2	95	45.082	Neolamprologus_brichardi
ENSSSCG00000016975	PTCD2	79	45.048	ENSNBRG00000000092	-	100	44.545	Neolamprologus_brichardi
ENSSSCG00000016975	PTCD2	90	81.039	ENSNLEG00000004516	PTCD2	99	81.039	Nomascus_leucogenys
ENSSSCG00000016975	PTCD2	76	53.667	ENSMEUG00000014012	-	99	46.875	Notamacropus_eugenii
ENSSSCG00000016975	PTCD2	91	73.385	ENSOPRG00000007290	PTCD2	99	73.385	Ochotona_princeps
ENSSSCG00000016975	PTCD2	90	75.979	ENSODEG00000016417	PTCD2	100	75.979	Octodon_degus
ENSSSCG00000016975	PTCD2	72	46.906	ENSONIG00000011269	ptcd2	89	46.906	Oreochromis_niloticus
ENSSSCG00000016975	PTCD2	86	79.945	ENSOCUG00000007970	PTCD2	100	78.068	Oryctolagus_cuniculus
ENSSSCG00000016975	PTCD2	87	45.109	ENSORLG00000003851	ptcd2	92	45.109	Oryzias_latipes
ENSSSCG00000016975	PTCD2	87	44.565	ENSORLG00020009823	ptcd2	94	44.565	Oryzias_latipes_hni
ENSSSCG00000016975	PTCD2	82	45.429	ENSORLG00015016777	ptcd2	99	45.429	Oryzias_latipes_hsok
ENSSSCG00000016975	PTCD2	85	44.321	ENSOMEG00000012396	ptcd2	87	44.321	Oryzias_melastigma
ENSSSCG00000016975	PTCD2	90	75.584	ENSOGAG00000008390	PTCD2	99	75.584	Otolemur_garnettii
ENSSSCG00000016975	PTCD2	91	84.833	ENSOARG00000005087	PTCD2	100	84.833	Ovis_aries
ENSSSCG00000016975	PTCD2	90	82.338	ENSPPAG00000028480	PTCD2	99	82.338	Pan_paniscus
ENSSSCG00000016975	PTCD2	90	81.818	ENSPTRG00000016968	PTCD2	99	81.818	Pan_troglodytes
ENSSSCG00000016975	PTCD2	81	82.609	ENSPANG00000006611	PTCD2	89	82.609	Papio_anubis
ENSSSCG00000016975	PTCD2	84	47.790	ENSPKIG00000019896	ptcd2	93	47.790	Paramormyrops_kingsleyae
ENSSSCG00000016975	PTCD2	73	59.677	ENSPSIG00000014559	PTCD2	97	58.917	Pelodiscus_sinensis
ENSSSCG00000016975	PTCD2	90	74.674	ENSPEMG00000000884	Ptcd2	100	74.674	Peromyscus_maniculatus_bairdii
ENSSSCG00000016975	PTCD2	90	59.375	ENSPCIG00000029047	PTCD2	100	59.375	Phascolarctos_cinereus
ENSSSCG00000016975	PTCD2	75	45.912	ENSPLAG00000010456	ptcd2	91	44.540	Poecilia_latipinna
ENSSSCG00000016975	PTCD2	82	45.115	ENSPREG00000021797	ptcd2	88	45.115	Poecilia_reticulata
ENSSSCG00000016975	PTCD2	89	72.191	ENSPPYG00000015543	PTCD2	99	72.191	Pongo_abelii
ENSSSCG00000016975	PTCD2	65	82.234	ENSPCAG00000006806	PTCD2	100	68.153	Procavia_capensis
ENSSSCG00000016975	PTCD2	91	83.763	ENSPVAG00000010935	PTCD2	100	83.763	Pteropus_vampyrus
ENSSSCG00000016975	PTCD2	86	44.809	ENSPNYG00000003122	ptcd2	93	44.809	Pundamilia_nyererei
ENSSSCG00000016975	PTCD2	86	48.501	ENSPNAG00000021490	ptcd2	95	48.774	Pygocentrus_nattereri
ENSSSCG00000016975	PTCD2	90	73.228	ENSRNOG00000028403	Ptcd2	100	73.228	Rattus_norvegicus
ENSSSCG00000016975	PTCD2	90	74.805	ENSRBIG00000032929	PTCD2	99	74.805	Rhinopithecus_bieti
ENSSSCG00000016975	PTCD2	90	80.157	ENSRROG00000000080	PTCD2	100	80.157	Rhinopithecus_roxellana
ENSSSCG00000016975	PTCD2	90	80.940	ENSSBOG00000018911	PTCD2	100	80.940	Saimiri_boliviensis_boliviensis
ENSSSCG00000016975	PTCD2	89	60.263	ENSSHAG00000003833	PTCD2	98	60.263	Sarcophilus_harrisii
ENSSSCG00000016975	PTCD2	78	47.289	ENSSFOG00015015415	ptcd2	86	47.289	Scleropages_formosus
ENSSSCG00000016975	PTCD2	82	44.669	ENSSMAG00000010350	ptcd2	90	44.669	Scophthalmus_maximus
ENSSSCG00000016975	PTCD2	86	48.087	ENSSDUG00000008142	ptcd2	90	48.087	Seriola_dumerili
ENSSSCG00000016975	PTCD2	86	48.361	ENSSLDG00000015284	ptcd2	95	48.361	Seriola_lalandi_dorsalis
ENSSSCG00000016975	PTCD2	73	70.607	ENSSARG00000004983	PTCD2	100	70.607	Sorex_araneus
ENSSSCG00000016975	PTCD2	90	52.344	ENSSPUG00000000176	PTCD2	96	52.344	Sphenodon_punctatus
ENSSSCG00000016975	PTCD2	85	44.628	ENSSPAG00000008591	ptcd2	92	44.628	Stegastes_partitus
ENSSSCG00000016975	PTCD2	81	49.422	ENSTGUG00000005705	PTCD2	99	49.422	Taeniopygia_guttata
ENSSSCG00000016975	PTCD2	91	77.003	ENSTBEG00000016559	PTCD2	99	77.003	Tupaia_belangeri
ENSSSCG00000016975	PTCD2	91	86.632	ENSTTRG00000011851	PTCD2	100	86.632	Tursiops_truncatus
ENSSSCG00000016975	PTCD2	100	77.049	ENSUAMG00000007583	PTCD2	100	77.049	Ursus_americanus
ENSSSCG00000016975	PTCD2	90	81.201	ENSUMAG00000007666	PTCD2	100	81.201	Ursus_maritimus
ENSSSCG00000016975	PTCD2	91	86.632	ENSVPAG00000009597	PTCD2	100	86.632	Vicugna_pacos
ENSSSCG00000016975	PTCD2	90	79.896	ENSVVUG00000007299	-	100	79.896	Vulpes_vulpes
ENSSSCG00000016975	PTCD2	82	51.282	ENSXETG00000031652	PTCD2	92	51.282	Xenopus_tropicalis
ENSSSCG00000016975	PTCD2	75	46.226	ENSXMAG00000005940	ptcd2	82	44.540	Xiphophorus_maculatus