EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000017289 (Gene tree)
Gene ID: 100512557
Gene Symbol: DDX42
Alias: RHELP|RNAHP|SF3B8|SF3b125
Full Name: DEAD-box helicase 42
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 51097 bases
Position: chr12:15114200-15165296
Accession: 100512557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000018319	ResIII	PF04851.15	1.7e-06	1	1
ENSSSCP00000045049	ResIII	PF04851.15	1.7e-06	1	1
ENSSSCP00000046875	ResIII	PF04851.15	1.9e-06	1	1
ENSSSCP00000045049	DEAD	PF00270.29	7.1e-50	1	1
ENSSSCP00000018319	DEAD	PF00270.29	8e-50	1	1
ENSSSCP00000046875	DEAD	PF00270.29	8.1e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000048234	DDX42-201	6409	-	ENSSSCP00000045049	800 (aa)	-	A0A287AMA9
ENSSSCT00000018821	DDX42-202	4256	XM_021066770	ENSSSCP00000018319	833 (aa)	XP_020922429	F1RSJ7
ENSSSCT00000037329	DDX42-203	5145	-	ENSSSCP00000046875	838 (aa)	-	A0A287ASN9

Gene Model

Click here to download ENSSSCG00000017289's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000017289's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000017289	DDX42	54	43.880	ENSSSCG00000000104	DDX17	87	43.750
ENSSSCG00000017289	DDX42	50	37.825	ENSSSCG00000012252	DDX3X	66	36.712
ENSSSCG00000017289	DDX42	50	38.647	ENSSSCG00000016913	DDX4	60	36.739
ENSSSCG00000017289	DDX42	55	38.612	ENSSSCG00000032642	DDX41	75	36.706
ENSSSCG00000017289	DDX42	53	37.104	ENSSSCG00000026430	DDX3Y	80	36.830
ENSSSCG00000017289	DDX42	68	38.172	ENSSSCG00000032092	DDX5	83	41.860
ENSSSCG00000017289	DDX42	55	37.333	ENSSSCG00000012169	-	71	37.556
ENSSSCG00000017289	DDX42	55	33.853	ENSSSCG00000024444	DDX59	72	33.853
ENSSSCG00000017289	DDX42	53	36.977	ENSSSCG00000004287	-	68	36.607

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000017289	DDX42	97	94.444	ENSG00000198231	DDX42	97	97.250	Homo_sapiens
ENSSSCG00000017289	DDX42	85	76.946	ENSAPOG00000017675	ddx42	86	71.644	Acanthochromis_polyacanthus
ENSSSCG00000017289	DDX42	97	95.409	ENSAMEG00000003200	DDX42	86	94.919	Ailuropoda_melanoleuca
ENSSSCG00000017289	DDX42	84	76.765	ENSACIG00000007376	ddx42	99	71.769	Amphilophus_citrinellus
ENSSSCG00000017289	DDX42	85	76.667	ENSAOCG00000003520	ddx42	86	70.681	Amphiprion_ocellaris
ENSSSCG00000017289	DDX42	88	75.305	ENSAPEG00000000984	ddx42	86	70.854	Amphiprion_percula
ENSSSCG00000017289	DDX42	97	70.738	ENSATEG00000022920	ddx42	86	70.854	Anabas_testudineus
ENSSSCG00000017289	DDX42	97	82.906	ENSAPLG00000010544	DDX42	85	81.137	Anas_platyrhynchos
ENSSSCG00000017289	DDX42	97	82.432	ENSACAG00000003994	DDX42	85	81.227	Anolis_carolinensis
ENSSSCG00000017289	DDX42	97	94.913	ENSANAG00000035693	DDX42	98	97.708	Aotus_nancymaae
ENSSSCG00000017289	DDX42	84	76.912	ENSACLG00000025113	ddx42	85	71.798	Astatotilapia_calliptera
ENSSSCG00000017289	DDX42	74	83.729	ENSAMXG00000011435	ddx42	75	75.829	Astyanax_mexicanus
ENSSSCG00000017289	DDX42	97	95.567	ENSBTAG00000021058	DDX42	96	97.529	Bos_taurus
ENSSSCG00000017289	DDX42	70	53.583	WBGene00008119	C46F11.4	75	53.583	Caenorhabditis_elegans
ENSSSCG00000017289	DDX42	97	95.037	ENSCJAG00000019649	DDX42	96	97.826	Callithrix_jacchus
ENSSSCG00000017289	DDX42	97	95.782	ENSCAFG00000012818	DDX42	86	95.782	Canis_familiaris
ENSSSCG00000017289	DDX42	97	95.906	ENSCAFG00020026631	DDX42	86	95.906	Canis_lupus_dingo
ENSSSCG00000017289	DDX42	97	96.292	ENSCHIG00000014431	DDX42	86	96.292	Capra_hircus
ENSSSCG00000017289	DDX42	97	94.176	ENSTSYG00000001380	DDX42	88	94.562	Carlito_syrichta
ENSSSCG00000017289	DDX42	83	76.724	ENSCAPG00000013621	DDX42	97	76.724	Cavia_aperea
ENSSSCG00000017289	DDX42	97	94.169	ENSCPOG00000005633	DDX42	85	94.169	Cavia_porcellus
ENSSSCG00000017289	DDX42	97	94.665	ENSCCAG00000020612	DDX42	97	97.395	Cebus_capucinus
ENSSSCG00000017289	DDX42	97	94.789	ENSCATG00000030490	DDX42	90	97.536	Cercocebus_atys
ENSSSCG00000017289	DDX42	97	94.665	ENSCLAG00000003497	DDX42	85	94.665	Chinchilla_lanigera
ENSSSCG00000017289	DDX42	97	90.552	ENSCSAG00000003914	DDX42	86	89.939	Chlorocebus_sabaeus
ENSSSCG00000017289	DDX42	73	94.643	ENSCHOG00000006241	DDX42	64	94.643	Choloepus_hoffmanni
ENSSSCG00000017289	DDX42	97	82.509	ENSCPBG00000026682	DDX42	86	80.879	Chrysemys_picta_bellii
ENSSSCG00000017289	DDX42	56	66.443	ENSCING00000001837	-	94	68.065	Ciona_intestinalis
ENSSSCG00000017289	DDX42	97	94.913	ENSCANG00000034663	DDX42	98	97.959	Colobus_angolensis_palliatus
ENSSSCG00000017289	DDX42	97	93.300	ENSCGRG00001009775	Ddx42	86	92.680	Cricetulus_griseus_chok1gshd
ENSSSCG00000017289	DDX42	97	93.300	ENSCGRG00000011718	Ddx42	86	92.680	Cricetulus_griseus_crigri
ENSSSCG00000017289	DDX42	86	74.792	ENSCSEG00000021574	ddx42	85	69.165	Cynoglossus_semilaevis
ENSSSCG00000017289	DDX42	97	70.270	ENSCVAG00000011404	ddx42	85	70.854	Cyprinodon_variegatus
ENSSSCG00000017289	DDX42	97	67.835	ENSDARG00000037928	ddx42	85	69.613	Danio_rerio
ENSSSCG00000017289	DDX42	97	87.392	ENSDNOG00000007961	DDX42	85	87.021	Dasypus_novemcinctus
ENSSSCG00000017289	DDX42	97	89.864	ENSDORG00000004199	Ddx42	89	89.864	Dipodomys_ordii
ENSSSCG00000017289	DDX42	69	62.411	FBgn0036104	CG6418	74	61.986	Drosophila_melanogaster
ENSSSCG00000017289	DDX42	74	76.774	ENSEBUG00000001155	ddx42	75	76.613	Eptatretus_burgeri
ENSSSCG00000017289	DDX42	97	96.154	ENSEASG00005013089	DDX42	98	97.968	Equus_asinus_asinus
ENSSSCG00000017289	DDX42	97	96.154	ENSECAG00000022684	DDX42	86	96.154	Equus_caballus
ENSSSCG00000017289	DDX42	64	98.131	ENSEEUG00000009144	DDX42	71	98.131	Erinaceus_europaeus
ENSSSCG00000017289	DDX42	97	70.013	ENSELUG00000020593	ddx42	85	69.082	Esox_lucius
ENSSSCG00000017289	DDX42	97	96.671	ENSFCAG00000003499	DDX42	99	96.671	Felis_catus
ENSSSCG00000017289	DDX42	85	88.858	ENSFALG00000004675	DDX42	61	90.738	Ficedula_albicollis
ENSSSCG00000017289	DDX42	97	94.541	ENSFDAG00000020516	DDX42	86	94.541	Fukomys_damarensis
ENSSSCG00000017289	DDX42	97	69.581	ENSFHEG00000023290	ddx42	85	70.025	Fundulus_heteroclitus
ENSSSCG00000017289	DDX42	68	79.450	ENSGMOG00000004595	ddx42	65	79.239	Gadus_morhua
ENSSSCG00000017289	DDX42	97	81.655	ENSGALG00000000581	DDX42	86	79.645	Gallus_gallus
ENSSSCG00000017289	DDX42	85	75.775	ENSGAFG00000011846	ddx42	82	72.564	Gambusia_affinis
ENSSSCG00000017289	DDX42	97	66.255	ENSGACG00000009782	ddx42	85	65.408	Gasterosteus_aculeatus
ENSSSCG00000017289	DDX42	97	82.930	ENSGAGG00000024411	DDX42	85	80.833	Gopherus_agassizii
ENSSSCG00000017289	DDX42	97	94.665	ENSGGOG00000006779	DDX42	96	97.681	Gorilla_gorilla
ENSSSCG00000017289	DDX42	84	76.765	ENSHBUG00000008705	ddx42	85	71.798	Haplochromis_burtoni
ENSSSCG00000017289	DDX42	95	92.782	ENSHGLG00000010024	DDX42	84	92.126	Heterocephalus_glaber_female
ENSSSCG00000017289	DDX42	96	73.149	ENSHGLG00100007138	-	85	73.149	Heterocephalus_glaber_male
ENSSSCG00000017289	DDX42	97	94.913	ENSHGLG00100004479	-	86	94.293	Heterocephalus_glaber_male
ENSSSCG00000017289	DDX42	77	82.114	ENSHCOG00000003357	ddx42	88	80.291	Hippocampus_comes
ENSSSCG00000017289	DDX42	73	83.967	ENSIPUG00000013327	ddx42	84	69.004	Ictalurus_punctatus
ENSSSCG00000017289	DDX42	97	95.291	ENSSTOG00000008922	DDX42	86	95.291	Ictidomys_tridecemlineatus
ENSSSCG00000017289	DDX42	97	93.548	ENSJJAG00000011727	Ddx42	85	93.548	Jaculus_jaculus
ENSSSCG00000017289	DDX42	97	65.586	ENSKMAG00000009914	ddx42	85	70.869	Kryptolebias_marmoratus
ENSSSCG00000017289	DDX42	74	78.678	ENSLBEG00000004687	ddx42	85	65.568	Labrus_bergylta
ENSSSCG00000017289	DDX42	97	73.886	ENSLACG00000013476	DDX42	83	75.123	Latimeria_chalumnae
ENSSSCG00000017289	DDX42	97	72.129	ENSLOCG00000011764	ddx42	85	72.772	Lepisosteus_oculatus
ENSSSCG00000017289	DDX42	97	95.037	ENSLAFG00000003249	DDX42	86	94.665	Loxodonta_africana
ENSSSCG00000017289	DDX42	97	94.789	ENSMFAG00000031356	DDX42	90	97.681	Macaca_fascicularis
ENSSSCG00000017289	DDX42	97	94.568	ENSMMUG00000016762	DDX42	97	96.586	Macaca_mulatta
ENSSSCG00000017289	DDX42	97	94.789	ENSMNEG00000038250	DDX42	91	97.681	Macaca_nemestrina
ENSSSCG00000017289	DDX42	97	94.691	ENSMLEG00000043080	DDX42	90	94.684	Mandrillus_leucophaeus
ENSSSCG00000017289	DDX42	85	76.979	ENSMAMG00000021888	ddx42	84	70.012	Mastacembelus_armatus
ENSSSCG00000017289	DDX42	84	76.912	ENSMZEG00005023103	ddx42	85	71.798	Maylandia_zebra
ENSSSCG00000017289	DDX42	97	82.014	ENSMGAG00000001822	DDX42	86	79.502	Meleagris_gallopavo
ENSSSCG00000017289	DDX42	84	97.135	ENSMAUG00000020774	-	93	97.135	Mesocricetus_auratus
ENSSSCG00000017289	DDX42	97	95.658	ENSMICG00000009952	DDX42	85	94.417	Microcebus_murinus
ENSSSCG00000017289	DDX42	97	92.184	ENSMOCG00000015504	Ddx42	85	91.315	Microtus_ochrogaster
ENSSSCG00000017289	DDX42	84	72.633	ENSMMOG00000016963	ddx42	71	73.951	Mola_mola
ENSSSCG00000017289	DDX42	97	71.023	ENSMALG00000007800	ddx42	85	71.358	Monopterus_albus
ENSSSCG00000017289	DDX42	97	93.548	MGP_CAROLIEiJ_G0017314	Ddx42	85	93.176	Mus_caroli
ENSSSCG00000017289	DDX42	97	93.548	ENSMUSG00000020705	Ddx42	85	93.176	Mus_musculus
ENSSSCG00000017289	DDX42	66	100.000	MGP_PahariEiJ_G0018444	-	78	100.000	Mus_pahari
ENSSSCG00000017289	DDX42	97	93.548	MGP_SPRETEiJ_G0018158	Ddx42	81	98.980	Mus_spretus
ENSSSCG00000017289	DDX42	97	96.278	ENSMPUG00000014921	DDX42	86	96.278	Mustela_putorius_furo
ENSSSCG00000017289	DDX42	97	92.892	ENSMLUG00000011645	DDX42	86	93.366	Myotis_lucifugus
ENSSSCG00000017289	DDX42	97	93.424	ENSNGAG00000021897	Ddx42	85	93.424	Nannospalax_galili
ENSSSCG00000017289	DDX42	84	76.912	ENSNBRG00000004466	ddx42	84	71.556	Neolamprologus_brichardi
ENSSSCG00000017289	DDX42	97	94.665	ENSNLEG00000004248	DDX42	98	97.826	Nomascus_leucogenys
ENSSSCG00000017289	DDX42	82	82.435	ENSMEUG00000013227	-	84	82.435	Notamacropus_eugenii
ENSSSCG00000017289	DDX42	97	94.932	ENSOPRG00000014960	DDX42	86	94.932	Ochotona_princeps
ENSSSCG00000017289	DDX42	97	90.819	ENSODEG00000007810	DDX42	85	90.819	Octodon_degus
ENSSSCG00000017289	DDX42	83	77.954	ENSONIG00000000734	ddx42	85	71.675	Oreochromis_niloticus
ENSSSCG00000017289	DDX42	63	92.235	ENSOANG00000000265	DDX42	98	92.235	Ornithorhynchus_anatinus
ENSSSCG00000017289	DDX42	92	95.437	ENSOCUG00000004304	DDX42	75	94.785	Oryctolagus_cuniculus
ENSSSCG00000017289	DDX42	97	69.828	ENSORLG00000002395	ddx42	85	68.727	Oryzias_latipes
ENSSSCG00000017289	DDX42	97	70.323	ENSORLG00020011621	ddx42	85	70.197	Oryzias_latipes_hni
ENSSSCG00000017289	DDX42	97	70.065	ENSORLG00015004487	ddx42	85	70.690	Oryzias_latipes_hsok
ENSSSCG00000017289	DDX42	77	81.762	ENSOMEG00000020093	ddx42	85	70.370	Oryzias_melastigma
ENSSSCG00000017289	DDX42	97	94.561	ENSOGAG00000006872	DDX42	86	94.067	Otolemur_garnettii
ENSSSCG00000017289	DDX42	97	96.310	ENSOARG00000013540	DDX42	86	96.310	Ovis_aries
ENSSSCG00000017289	DDX42	97	94.913	ENSPPAG00000007496	DDX42	97	97.826	Pan_paniscus
ENSSSCG00000017289	DDX42	97	96.402	ENSPPRG00000002740	DDX42	86	96.402	Panthera_pardus
ENSSSCG00000017289	DDX42	97	96.278	ENSPTIG00000009932	DDX42	86	96.278	Panthera_tigris_altaica
ENSSSCG00000017289	DDX42	97	94.913	ENSPTRG00000009523	DDX42	97	97.826	Pan_troglodytes
ENSSSCG00000017289	DDX42	97	94.913	ENSPANG00000020990	DDX42	91	97.708	Papio_anubis
ENSSSCG00000017289	DDX42	73	84.184	ENSPKIG00000002901	ddx42	81	76.062	Paramormyrops_kingsleyae
ENSSSCG00000017289	DDX42	80	92.593	ENSPSIG00000010289	DDX42	83	92.229	Pelodiscus_sinensis
ENSSSCG00000017289	DDX42	85	75.988	ENSPMGG00000009323	ddx42	85	70.754	Periophthalmus_magnuspinnatus
ENSSSCG00000017289	DDX42	97	93.556	ENSPEMG00000006755	Ddx42	85	92.937	Peromyscus_maniculatus_bairdii
ENSSSCG00000017289	DDX42	74	75.040	ENSPMAG00000005580	ddx42	83	75.358	Petromyzon_marinus
ENSSSCG00000017289	DDX42	97	89.951	ENSPCIG00000009093	DDX42	86	88.971	Phascolarctos_cinereus
ENSSSCG00000017289	DDX42	97	68.825	ENSPFOG00000014104	ddx42	86	69.481	Poecilia_formosa
ENSSSCG00000017289	DDX42	97	68.705	ENSPLAG00000010522	ddx42	86	69.361	Poecilia_latipinna
ENSSSCG00000017289	DDX42	97	68.490	ENSPMEG00000010744	ddx42	86	68.817	Poecilia_mexicana
ENSSSCG00000017289	DDX42	97	68.667	ENSPREG00000009926	ddx42	86	69.697	Poecilia_reticulata
ENSSSCG00000017289	DDX42	97	92.260	ENSPPYG00000008531	DDX42	86	91.646	Pongo_abelii
ENSSSCG00000017289	DDX42	97	90.944	ENSPCAG00000002474	DDX42	93	89.082	Procavia_capensis
ENSSSCG00000017289	DDX42	97	86.158	ENSPCOG00000001559	DDX42	98	89.396	Propithecus_coquereli
ENSSSCG00000017289	DDX42	97	93.432	ENSPVAG00000000160	DDX42	86	93.432	Pteropus_vampyrus
ENSSSCG00000017289	DDX42	84	74.412	ENSPNYG00000013954	ddx42	99	68.940	Pundamilia_nyererei
ENSSSCG00000017289	DDX42	73	83.932	ENSPNAG00000017352	ddx42	99	66.500	Pygocentrus_nattereri
ENSSSCG00000017289	DDX42	97	93.300	ENSRNOG00000009474	Ddx42	85	92.928	Rattus_norvegicus
ENSSSCG00000017289	DDX42	97	94.789	ENSRBIG00000004781	DDX42	98	97.813	Rhinopithecus_bieti
ENSSSCG00000017289	DDX42	97	94.789	ENSRROG00000029794	DDX42	98	93.951	Rhinopithecus_roxellana
ENSSSCG00000017289	DDX42	97	94.913	ENSSBOG00000029624	DDX42	96	97.681	Saimiri_boliviensis_boliviensis
ENSSSCG00000017289	DDX42	97	90.441	ENSSHAG00000012896	-	86	89.461	Sarcophilus_harrisii
ENSSSCG00000017289	DDX42	83	61.630	ENSSHAG00000007919	-	99	60.296	Sarcophilus_harrisii
ENSSSCG00000017289	DDX42	76	83.388	ENSSFOG00015014064	ddx42	69	82.764	Scleropages_formosus
ENSSSCG00000017289	DDX42	84	76.855	ENSSMAG00000009077	ddx42	99	71.521	Scophthalmus_maximus
ENSSSCG00000017289	DDX42	97	70.782	ENSSDUG00000022221	ddx42	85	70.624	Seriola_dumerili
ENSSSCG00000017289	DDX42	97	70.494	ENSSLDG00000018483	ddx42	85	69.742	Seriola_lalandi_dorsalis
ENSSSCG00000017289	DDX42	97	94.789	ENSSARG00000009847	DDX42	86	94.789	Sorex_araneus
ENSSSCG00000017289	DDX42	97	81.949	ENSSPUG00000018806	DDX42	85	81.084	Sphenodon_punctatus
ENSSSCG00000017289	DDX42	85	76.741	ENSSPAG00000013055	ddx42	85	71.218	Stegastes_partitus
ENSSSCG00000017289	DDX42	97	82.864	ENSTGUG00000001931	DDX42	85	83.045	Taeniopygia_guttata
ENSSSCG00000017289	DDX42	86	74.412	ENSTRUG00000010711	ddx42	71	84.013	Takifugu_rubripes
ENSSSCG00000017289	DDX42	76	93.492	ENSTBEG00000010159	DDX42	83	93.492	Tupaia_belangeri
ENSSSCG00000017289	DDX42	97	96.283	ENSTTRG00000006962	DDX42	86	96.283	Tursiops_truncatus
ENSSSCG00000017289	DDX42	97	95.533	ENSUAMG00000007321	DDX42	86	95.043	Ursus_americanus
ENSSSCG00000017289	DDX42	97	95.037	ENSUMAG00000017438	DDX42	85	94.548	Ursus_maritimus
ENSSSCG00000017289	DDX42	97	85.608	ENSVPAG00000009633	DDX42	86	85.608	Vicugna_pacos
ENSSSCG00000017289	DDX42	97	96.154	ENSVVUG00000006095	DDX42	86	96.154	Vulpes_vulpes
ENSSSCG00000017289	DDX42	97	74.880	ENSXETG00000003245	ddx42	86	73.438	Xenopus_tropicalis
ENSSSCG00000017289	DDX42	97	70.379	ENSXCOG00000017560	ddx42	99	70.588	Xiphophorus_couchianus
ENSSSCG00000017289	DDX42	97	70.849	ENSXMAG00000008138	ddx42	85	71.218	Xiphophorus_maculatus