EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000017477 (Gene tree)
Gene ID: 100525426
Gene Symbol: CASC3
Alias: BTZ|MLN51
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 24767 bases
Position: chr12:22196148-22220914
Accession: 100525426
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000056784	Btz	PF09405.10	1.5e-23	1	1
ENSSSCP00000018523	Btz	PF09405.10	1.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000019028	CASC3-201	6747	XM_021067024	ENSSSCP00000018523	633 (aa)	XP_020922683	F1RXC7
ENSSSCT00000050003	CASC3-202	6777	-	ENSSSCP00000056784	643 (aa)	-	A0A287BL32

Gene Model

Click here to download ENSSSCG00000017477's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000017477's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000017477	CASC3	98	92.295	ENSG00000108349	CASC3	100	90.909	Homo_sapiens
ENSSSCG00000017477	CASC3	98	94.703	ENSAMEG00000007764	CASC3	89	94.728	Ailuropoda_melanoleuca
ENSSSCG00000017477	CASC3	71	65.359	ENSATEG00000017196	casc3	68	53.871	Anabas_testudineus
ENSSSCG00000017477	CASC3	99	73.469	ENSACAG00000002674	CASC3	87	73.502	Anolis_carolinensis
ENSSSCG00000017477	CASC3	99	83.067	ENSANAG00000034820	-	89	85.841	Aotus_nancymaae
ENSSSCG00000017477	CASC3	61	96.226	ENSANAG00000031954	-	83	96.226	Aotus_nancymaae
ENSSSCG00000017477	CASC3	71	68.212	ENSACLG00000016198	casc3	72	54.098	Astatotilapia_calliptera
ENSSSCG00000017477	CASC3	98	95.506	ENSBTAG00000006250	CASC3	89	95.527	Bos_taurus
ENSSSCG00000017477	CASC3	98	90.369	ENSCJAG00000016032	CASC3	89	90.415	Callithrix_jacchus
ENSSSCG00000017477	CASC3	98	95.024	ENSCAFG00000016141	CASC3	89	95.048	Canis_familiaris
ENSSSCG00000017477	CASC3	97	94.976	ENSCAFG00020018882	CASC3	88	94.976	Canis_lupus_dingo
ENSSSCG00000017477	CASC3	98	94.830	ENSCHIG00000006338	CASC3	88	94.830	Capra_hircus
ENSSSCG00000017477	CASC3	99	93.450	ENSTSYG00000002975	CASC3	89	93.450	Carlito_syrichta
ENSSSCG00000017477	CASC3	97	88.149	ENSCAPG00000010514	CASC3	100	88.149	Cavia_aperea
ENSSSCG00000017477	CASC3	98	88.122	ENSCPOG00000015139	CASC3	90	88.179	Cavia_porcellus
ENSSSCG00000017477	CASC3	98	91.827	ENSCCAG00000033620	CASC3	89	92.026	Cebus_capucinus
ENSSSCG00000017477	CASC3	98	93.269	ENSCATG00000033593	CASC3	89	93.301	Cercocebus_atys
ENSSSCG00000017477	CASC3	98	88.925	ENSCLAG00000013730	CASC3	89	88.978	Chinchilla_lanigera
ENSSSCG00000017477	CASC3	98	93.269	ENSCSAG00000002777	CASC3	89	93.301	Chlorocebus_sabaeus
ENSSSCG00000017477	CASC3	99	78.730	ENSCPBG00000004750	CASC3	95	78.422	Chrysemys_picta_bellii
ENSSSCG00000017477	CASC3	98	93.269	ENSCANG00000008814	CASC3	89	93.301	Colobus_angolensis_palliatus
ENSSSCG00000017477	CASC3	98	91.332	ENSCGRG00001014706	Casc3	89	91.374	Cricetulus_griseus_chok1gshd
ENSSSCG00000017477	CASC3	99	91.374	ENSCGRG00000001952	Casc3	96	91.374	Cricetulus_griseus_crigri
ENSSSCG00000017477	CASC3	71	62.179	ENSCSEG00000010047	casc3	66	52.869	Cynoglossus_semilaevis
ENSSSCG00000017477	CASC3	71	69.784	ENSCVAG00000014935	casc3	74	54.839	Cyprinodon_variegatus
ENSSSCG00000017477	CASC3	98	93.258	ENSDNOG00000017249	CASC3	86	93.291	Dasypus_novemcinctus
ENSSSCG00000017477	CASC3	98	86.517	ENSETEG00000013720	CASC3	89	86.581	Echinops_telfairi
ENSSSCG00000017477	CASC3	97	38.018	ENSEBUG00000010654	casc3	93	35.484	Eptatretus_burgeri
ENSSSCG00000017477	CASC3	98	94.669	ENSEASG00005002909	CASC3	88	94.669	Equus_asinus_asinus
ENSSSCG00000017477	CASC3	98	95.024	ENSECAG00000019947	CASC3	78	95.048	Equus_caballus
ENSSSCG00000017477	CASC3	68	89.583	ENSEEUG00000014253	CASC3	85	89.583	Erinaceus_europaeus
ENSSSCG00000017477	CASC3	98	94.703	ENSFCAG00000014998	CASC3	89	94.728	Felis_catus
ENSSSCG00000017477	CASC3	98	73.865	ENSFALG00000000412	CASC3	98	73.354	Ficedula_albicollis
ENSSSCG00000017477	CASC3	99	86.443	ENSFDAG00000020696	CASC3	96	86.443	Fukomys_damarensis
ENSSSCG00000017477	CASC3	70	71.223	ENSFHEG00000015793	casc3	59	65.060	Fundulus_heteroclitus
ENSSSCG00000017477	CASC3	99	77.193	ENSGALG00000031813	CASC3	95	76.874	Gallus_gallus
ENSSSCG00000017477	CASC3	70	65.269	ENSGAFG00000017148	casc3	60	53.543	Gambusia_affinis
ENSSSCG00000017477	CASC3	97	78.675	ENSGAGG00000008432	CASC3	94	78.191	Gopherus_agassizii
ENSSSCG00000017477	CASC3	98	92.135	ENSGGOG00000005067	CASC3	89	92.173	Gorilla_gorilla
ENSSSCG00000017477	CASC3	71	68.874	ENSHBUG00000013155	casc3	72	54.098	Haplochromis_burtoni
ENSSSCG00000017477	CASC3	98	88.925	ENSHGLG00000012117	CASC3	89	88.978	Heterocephalus_glaber_female
ENSSSCG00000017477	CASC3	99	88.978	ENSHGLG00100002268	CASC3	100	88.978	Heterocephalus_glaber_male
ENSSSCG00000017477	CASC3	98	92.616	ENSSTOG00000006374	CASC3	89	92.652	Ictidomys_tridecemlineatus
ENSSSCG00000017477	CASC3	99	91.214	ENSJJAG00000023525	Casc3	89	91.214	Jaculus_jaculus
ENSSSCG00000017477	CASC3	74	62.605	ENSKMAG00000019507	casc3	75	51.852	Kryptolebias_marmoratus
ENSSSCG00000017477	CASC3	70	68.571	ENSLBEG00000005435	casc3	58	58.919	Labrus_bergylta
ENSSSCG00000017477	CASC3	97	60.883	ENSLACG00000013200	CASC3	87	60.686	Latimeria_chalumnae
ENSSSCG00000017477	CASC3	69	73.430	ENSLOCG00000013518	casc3	63	70.531	Lepisosteus_oculatus
ENSSSCG00000017477	CASC3	99	93.930	ENSLAFG00000000606	CASC3	89	93.930	Loxodonta_africana
ENSSSCG00000017477	CASC3	98	93.269	ENSMFAG00000041496	CASC3	88	94.667	Macaca_fascicularis
ENSSSCG00000017477	CASC3	98	93.269	ENSMMUG00000045187	CASC3	89	93.301	Macaca_mulatta
ENSSSCG00000017477	CASC3	100	93.218	ENSMLEG00000029049	CASC3	100	93.218	Mandrillus_leucophaeus
ENSSSCG00000017477	CASC3	72	65.031	ENSMAMG00000005235	casc3	68	55.102	Mastacembelus_armatus
ENSSSCG00000017477	CASC3	71	68.212	ENSMZEG00005003815	casc3	72	54.098	Maylandia_zebra
ENSSSCG00000017477	CASC3	96	76.151	ENSMGAG00000013247	CASC3	99	74.472	Meleagris_gallopavo
ENSSSCG00000017477	CASC3	79	90.438	ENSMAUG00000006023	Casc3	80	90.438	Mesocricetus_auratus
ENSSSCG00000017477	CASC3	98	92.122	ENSMICG00000003321	CASC3	89	91.214	Microcebus_murinus
ENSSSCG00000017477	CASC3	99	90.415	ENSMOCG00000013644	Casc3	89	89.297	Microtus_ochrogaster
ENSSSCG00000017477	CASC3	71	66.906	ENSMMOG00000014339	casc3	67	56.522	Mola_mola
ENSSSCG00000017477	CASC3	98	80.320	ENSMODG00000013044	CASC3	82	80.096	Monodelphis_domestica
ENSSSCG00000017477	CASC3	98	90.209	MGP_CAROLIEiJ_G0017099	Casc3	89	89.617	Mus_caroli
ENSSSCG00000017477	CASC3	98	89.727	ENSMUSG00000078676	Casc3	89	89.137	Mus_musculus
ENSSSCG00000017477	CASC3	98	89.888	MGP_SPRETEiJ_G0017943	Casc3	89	89.297	Mus_spretus
ENSSSCG00000017477	CASC3	98	94.222	ENSMPUG00000014903	CASC3	89	94.249	Mustela_putorius_furo
ENSSSCG00000017477	CASC3	98	91.040	ENSMLUG00000010520	CASC3	89	91.083	Myotis_lucifugus
ENSSSCG00000017477	CASC3	98	90.209	ENSNGAG00000023121	Casc3	89	89.457	Nannospalax_galili
ENSSSCG00000017477	CASC3	98	91.814	ENSNLEG00000001598	CASC3	89	91.214	Nomascus_leucogenys
ENSSSCG00000017477	CASC3	80	93.827	ENSMEUG00000015662	CASC3	86	93.293	Notamacropus_eugenii
ENSSSCG00000017477	CASC3	68	87.963	ENSOPRG00000007240	-	68	100.000	Ochotona_princeps
ENSSSCG00000017477	CASC3	99	87.859	ENSODEG00000017858	CASC3	89	88.818	Octodon_degus
ENSSSCG00000017477	CASC3	71	68.874	ENSONIG00000009337	casc3	90	49.690	Oreochromis_niloticus
ENSSSCG00000017477	CASC3	88	53.541	ENSOANG00000003499	-	81	71.186	Ornithorhynchus_anatinus
ENSSSCG00000017477	CASC3	98	93.740	ENSOCUG00000002954	CASC3	89	93.770	Oryctolagus_cuniculus
ENSSSCG00000017477	CASC3	98	92.013	ENSOGAG00000034486	CASC3	87	92.605	Otolemur_garnettii
ENSSSCG00000017477	CASC3	98	95.506	ENSOARG00000013239	CASC3	89	95.527	Ovis_aries
ENSSSCG00000017477	CASC3	98	92.295	ENSPPAG00000035069	CASC3	89	92.332	Pan_paniscus
ENSSSCG00000017477	CASC3	98	95.024	ENSPPRG00000023670	CASC3	89	95.048	Panthera_pardus
ENSSSCG00000017477	CASC3	98	94.543	ENSPTIG00000010891	CASC3	89	94.569	Panthera_tigris_altaica
ENSSSCG00000017477	CASC3	98	92.949	ENSPANG00000021708	CASC3	89	92.982	Papio_anubis
ENSSSCG00000017477	CASC3	98	91.493	ENSPEMG00000009774	Casc3	89	91.534	Peromyscus_maniculatus_bairdii
ENSSSCG00000017477	CASC3	99	84.713	ENSPCIG00000025678	CASC3	90	84.873	Phascolarctos_cinereus
ENSSSCG00000017477	CASC3	98	48.189	ENSPFOG00000017632	casc3	79	61.224	Poecilia_formosa
ENSSSCG00000017477	CASC3	74	65.882	ENSPLAG00000005268	casc3	69	55.336	Poecilia_latipinna
ENSSSCG00000017477	CASC3	76	44.625	ENSPMEG00000010299	casc3	73	46.903	Poecilia_mexicana
ENSSSCG00000017477	CASC3	70	67.857	ENSPREG00000011856	casc3	82	49.910	Poecilia_reticulata
ENSSSCG00000017477	CASC3	99	91.827	ENSPPYG00000008467	CASC3	89	92.628	Pongo_abelii
ENSSSCG00000017477	CASC3	98	92.122	ENSPCOG00000008183	CASC3	89	92.173	Propithecus_coquereli
ENSSSCG00000017477	CASC3	98	94.382	ENSPVAG00000008556	CASC3	89	94.409	Pteropus_vampyrus
ENSSSCG00000017477	CASC3	71	68.874	ENSPNYG00000011962	casc3	72	54.098	Pundamilia_nyererei
ENSSSCG00000017477	CASC3	89	93.694	ENSRNOG00000009716	Casc3	88	93.778	Rattus_norvegicus
ENSSSCG00000017477	CASC3	98	93.429	ENSRBIG00000033289	CASC3	88	93.355	Rhinopithecus_bieti
ENSSSCG00000017477	CASC3	98	93.429	ENSRROG00000022337	CASC3	89	93.461	Rhinopithecus_roxellana
ENSSSCG00000017477	CASC3	97	90.615	ENSSBOG00000031406	CASC3	98	91.748	Saimiri_boliviensis_boliviensis
ENSSSCG00000017477	CASC3	99	85.191	ENSSHAG00000013338	CASC3	100	85.350	Sarcophilus_harrisii
ENSSSCG00000017477	CASC3	71	67.361	ENSSMAG00000016096	casc3	67	52.258	Scophthalmus_maximus
ENSSSCG00000017477	CASC3	82	51.653	ENSSDUG00000016893	casc3	67	54.959	Seriola_dumerili
ENSSSCG00000017477	CASC3	72	60.645	ENSSLDG00000020308	casc3	84	55.495	Seriola_lalandi_dorsalis
ENSSSCG00000017477	CASC3	94	81.145	ENSSARG00000010378	CASC3	99	81.198	Sorex_araneus
ENSSSCG00000017477	CASC3	82	74.715	ENSTGUG00000002300	CASC3	99	73.905	Taeniopygia_guttata
ENSSSCG00000017477	CASC3	51	51.351	ENSTRUG00000000673	casc3	91	45.429	Takifugu_rubripes
ENSSSCG00000017477	CASC3	63	97.170	ENSTBEG00000017459	CASC3	57	97.170	Tupaia_belangeri
ENSSSCG00000017477	CASC3	95	85.927	ENSTTRG00000016896	CASC3	100	85.927	Tursiops_truncatus
ENSSSCG00000017477	CASC3	97	94.165	ENSUAMG00000015116	CASC3	86	96.789	Ursus_americanus
ENSSSCG00000017477	CASC3	100	93.681	ENSUMAG00000017697	CASC3	100	95.876	Ursus_maritimus
ENSSSCG00000017477	CASC3	68	100.000	ENSVPAG00000000799	CASC3	61	100.000	Vicugna_pacos
ENSSSCG00000017477	CASC3	98	95.345	ENSVVUG00000000997	CASC3	89	95.367	Vulpes_vulpes
ENSSSCG00000017477	CASC3	98	60.191	ENSXETG00000024395	casc3	89	61.173	Xenopus_tropicalis
ENSSSCG00000017477	CASC3	74	65.476	ENSXMAG00000013937	casc3	69	52.941	Xiphophorus_maculatus