EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSSSCG00000017626 (Gene tree)
Gene ID: 654327
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 6892 bases
Position: chr12:34275271-34282162
Accession: 654327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000018680	RRM_1	PF00076.22	2.1e-33	1	2
ENSSSCP00000018680	RRM_1	PF00076.22	2.1e-33	2	2
ENSSSCP00000045363	RRM_1	PF00076.22	2.1e-33	1	2
ENSSSCP00000045363	RRM_1	PF00076.22	2.1e-33	2	2
ENSSSCP00000057414	RRM_1	PF00076.22	2.1e-33	1	2
ENSSSCP00000057414	RRM_1	PF00076.22	2.1e-33	2	2
ENSSSCP00000057405	RRM_1	PF00076.22	2.3e-33	1	2
ENSSSCP00000057405	RRM_1	PF00076.22	2.3e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000049897	-	5908	-	ENSSSCP00000045363	248 (aa)	-	Q3YLA6
ENSSSCT00000019188	-	2682	-	ENSSSCP00000018680	248 (aa)	-	Q3YLA6
ENSSSCT00000048013	-	1486	-	ENSSSCP00000057405	253 (aa)	-	A0A287BMV2
ENSSSCT00000043811	-	5813	-	ENSSSCP00000057414	248 (aa)	-	Q3YLA6

Gene Model

Click here to download ENSSSCG00000017626's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG
ssc04657	IL-17 signaling pathway	KEGG
ssc05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000017626's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000017626	-	70	54.913	ENSSSCG00000038585	-	68	57.812
ENSSSCG00000017626	-	66	46.154	ENSSSCG00000003589	SRSF4	52	41.406
ENSSSCG00000017626	-	77	69.792	ENSSSCG00000009906	SRSF9	82	69.792
ENSSSCG00000017626	-	65	46.988	ENSSSCG00000032583	SRSF5	59	45.509
ENSSSCG00000017626	-	78	42.584	ENSSSCG00000007362	SRSF6	66	41.148

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000017626	-	100	100.000	ENSG00000136450	SRSF1	100	100.000	Homo_sapiens
ENSSSCG00000017626	-	79	91.133	ENSAPOG00000008542	-	100	86.220	Acanthochromis_polyacanthus
ENSSSCG00000017626	-	78	91.710	ENSAPOG00000002748	-	98	84.362	Acanthochromis_polyacanthus
ENSSSCG00000017626	-	100	97.177	ENSAMEG00000002635	SRSF1	100	97.177	Ailuropoda_melanoleuca
ENSSSCG00000017626	-	88	86.099	ENSACIG00000008091	srsf1a	98	78.926	Amphilophus_citrinellus
ENSSSCG00000017626	-	79	91.133	ENSAOCG00000000337	-	100	86.508	Amphiprion_ocellaris
ENSSSCG00000017626	-	88	86.547	ENSAOCG00000010671	-	98	85.185	Amphiprion_ocellaris
ENSSSCG00000017626	-	79	91.133	ENSAPEG00000023352	-	99	86.561	Amphiprion_percula
ENSSSCG00000017626	-	88	86.547	ENSAPEG00000009915	-	98	85.185	Amphiprion_percula
ENSSSCG00000017626	-	82	87.192	ENSATEG00000021567	-	100	84.959	Anabas_testudineus
ENSSSCG00000017626	-	78	92.228	ENSATEG00000022403	-	98	84.898	Anabas_testudineus
ENSSSCG00000017626	-	100	98.387	ENSACAG00000005542	-	100	98.387	Anolis_carolinensis
ENSSSCG00000017626	-	100	100.000	ENSANAG00000020583	-	100	100.000	Aotus_nancymaae
ENSSSCG00000017626	-	81	73.500	ENSANAG00000025417	-	99	76.016	Aotus_nancymaae
ENSSSCG00000017626	-	54	78.065	ENSAMXG00000024373	-	94	77.778	Astyanax_mexicanus
ENSSSCG00000017626	-	94	91.632	ENSAMXG00000035996	srsf1a	98	93.145	Astyanax_mexicanus
ENSSSCG00000017626	-	100	100.000	ENSBTAG00000014766	SRSF1	100	100.000	Bos_taurus
ENSSSCG00000017626	-	100	100.000	ENSCJAG00000041713	-	100	100.000	Callithrix_jacchus
ENSSSCG00000017626	-	79	91.837	ENSCJAG00000008111	-	88	91.371	Callithrix_jacchus
ENSSSCG00000017626	-	100	100.000	ENSCAFG00000017430	SRSF1	100	100.000	Canis_familiaris
ENSSSCG00000017626	-	100	100.000	ENSCAFG00020025632	-	100	100.000	Canis_lupus_dingo
ENSSSCG00000017626	-	100	100.000	ENSCHIG00000010787	SRSF1	100	100.000	Capra_hircus
ENSSSCG00000017626	-	100	100.000	ENSTSYG00000013899	-	100	100.000	Carlito_syrichta
ENSSSCG00000017626	-	100	100.000	ENSCPOG00000032681	-	100	100.000	Cavia_porcellus
ENSSSCG00000017626	-	100	100.000	ENSCCAG00000029484	-	100	100.000	Cebus_capucinus
ENSSSCG00000017626	-	100	100.000	ENSCATG00000042294	-	100	100.000	Cercocebus_atys
ENSSSCG00000017626	-	100	100.000	ENSCLAG00000014707	-	100	100.000	Chinchilla_lanigera
ENSSSCG00000017626	-	100	99.209	ENSCSAG00000005642	-	100	99.209	Chlorocebus_sabaeus
ENSSSCG00000017626	-	100	100.000	ENSCHOG00000001899	SRSF1	100	100.000	Choloepus_hoffmanni
ENSSSCG00000017626	-	100	98.814	ENSCPBG00000009851	-	100	98.814	Chrysemys_picta_bellii
ENSSSCG00000017626	-	100	100.000	ENSCANG00000029726	-	100	100.000	Colobus_angolensis_palliatus
ENSSSCG00000017626	-	100	100.000	ENSCGRG00001000670	Srsf1	100	100.000	Cricetulus_griseus_chok1gshd
ENSSSCG00000017626	-	100	100.000	ENSCGRG00000005590	Srsf1	100	100.000	Cricetulus_griseus_crigri
ENSSSCG00000017626	-	78	91.327	ENSCSEG00000014272	-	98	84.553	Cynoglossus_semilaevis
ENSSSCG00000017626	-	79	83.962	ENSCSEG00000009973	-	100	80.303	Cynoglossus_semilaevis
ENSSSCG00000017626	-	78	89.744	ENSCVAG00000005458	-	98	86.179	Cyprinodon_variegatus
ENSSSCG00000017626	-	78	92.228	ENSCVAG00000018617	-	98	85.185	Cyprinodon_variegatus
ENSSSCG00000017626	-	78	89.706	ENSDARG00000057691	srsf1a	98	92.095	Danio_rerio
ENSSSCG00000017626	-	99	96.735	ENSDARG00000017843	srsf1b	99	96.735	Danio_rerio
ENSSSCG00000017626	-	100	100.000	ENSDNOG00000011737	-	100	100.000	Dasypus_novemcinctus
ENSSSCG00000017626	-	100	100.000	ENSDORG00000015082	Srsf1	100	100.000	Dipodomys_ordii
ENSSSCG00000017626	-	74	98.913	ENSETEG00000005349	-	63	98.913	Echinops_telfairi
ENSSSCG00000017626	-	100	100.000	ENSEASG00005002922	-	100	100.000	Equus_asinus_asinus
ENSSSCG00000017626	-	100	100.000	ENSECAG00000016654	SRSF1	100	100.000	Equus_caballus
ENSSSCG00000017626	-	74	100.000	ENSEEUG00000009255	-	63	100.000	Erinaceus_europaeus
ENSSSCG00000017626	-	78	93.299	ENSELUG00000021646	srsf1a	98	79.839	Esox_lucius
ENSSSCG00000017626	-	100	100.000	ENSFCAG00000002250	-	100	100.000	Felis_catus
ENSSSCG00000017626	-	100	82.213	ENSFALG00000005062	-	100	82.213	Ficedula_albicollis
ENSSSCG00000017626	-	100	100.000	ENSFDAG00000010646	-	100	100.000	Fukomys_damarensis
ENSSSCG00000017626	-	88	86.547	ENSFHEG00000003174	srsf1a	98	85.185	Fundulus_heteroclitus
ENSSSCG00000017626	-	80	89.394	ENSGMOG00000014787	-	99	82.645	Gadus_morhua
ENSSSCG00000017626	-	100	98.790	ENSGALG00000005525	SRSF1	100	98.790	Gallus_gallus
ENSSSCG00000017626	-	79	86.802	ENSGACG00000020621	srsf1b	100	74.390	Gasterosteus_aculeatus
ENSSSCG00000017626	-	100	98.814	ENSGAGG00000022965	-	100	98.814	Gopherus_agassizii
ENSSSCG00000017626	-	100	100.000	ENSGGOG00000004386	SRSF1	100	100.000	Gorilla_gorilla
ENSSSCG00000017626	-	88	86.099	ENSHBUG00000016788	srsf1a	98	84.774	Haplochromis_burtoni
ENSSSCG00000017626	-	87	100.000	ENSHGLG00000000600	-	100	100.000	Heterocephalus_glaber_female
ENSSSCG00000017626	-	87	100.000	ENSHGLG00000000669	-	100	100.000	Heterocephalus_glaber_female
ENSSSCG00000017626	-	100	100.000	ENSHGLG00100016906	-	100	100.000	Heterocephalus_glaber_male
ENSSSCG00000017626	-	78	87.310	ENSHCOG00000018918	srsf1a	97	81.928	Hippocampus_comes
ENSSSCG00000017626	-	94	91.213	ENSIPUG00000017039	srsf1a	98	93.145	Ictalurus_punctatus
ENSSSCG00000017626	-	100	95.968	ENSIPUG00000008750	srsf1b	100	95.968	Ictalurus_punctatus
ENSSSCG00000017626	-	100	100.000	ENSSTOG00000000243	-	100	100.000	Ictidomys_tridecemlineatus
ENSSSCG00000017626	-	100	100.000	ENSJJAG00000000102	-	100	100.000	Jaculus_jaculus
ENSSSCG00000017626	-	51	92.126	ENSJJAG00000014464	-	95	88.189	Jaculus_jaculus
ENSSSCG00000017626	-	78	92.228	ENSKMAG00000019232	srsf1a	98	83.951	Kryptolebias_marmoratus
ENSSSCG00000017626	-	79	84.500	ENSLBEG00000015294	-	98	83.133	Labrus_bergylta
ENSSSCG00000017626	-	88	85.650	ENSLBEG00000020864	-	98	84.362	Labrus_bergylta
ENSSSCG00000017626	-	78	94.845	ENSLACG00000014160	srsf1a	92	93.878	Latimeria_chalumnae
ENSSSCG00000017626	-	100	97.177	ENSLOCG00000005994	srsf1a	100	97.177	Lepisosteus_oculatus
ENSSSCG00000017626	-	100	100.000	ENSLAFG00000025743	SRSF1	100	100.000	Loxodonta_africana
ENSSSCG00000017626	-	100	100.000	ENSMFAG00000040003	-	100	100.000	Macaca_fascicularis
ENSSSCG00000017626	-	100	100.000	ENSMMUG00000004725	SRSF1	100	100.000	Macaca_mulatta
ENSSSCG00000017626	-	100	97.233	ENSMMUG00000003260	-	100	97.233	Macaca_mulatta
ENSSSCG00000017626	-	100	100.000	ENSMNEG00000027680	-	100	100.000	Macaca_nemestrina
ENSSSCG00000017626	-	100	96.838	ENSMNEG00000015983	-	100	96.838	Macaca_nemestrina
ENSSSCG00000017626	-	100	100.000	ENSMLEG00000040509	SRSF1	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000017626	-	100	94.466	ENSMLEG00000015243	-	100	94.466	Mandrillus_leucophaeus
ENSSSCG00000017626	-	78	92.228	ENSMAMG00000018454	-	98	85.185	Mastacembelus_armatus
ENSSSCG00000017626	-	79	90.355	ENSMAMG00000019687	-	100	85.081	Mastacembelus_armatus
ENSSSCG00000017626	-	79	94.924	ENSMAMG00000019691	-	100	88.211	Mastacembelus_armatus
ENSSSCG00000017626	-	100	100.000	ENSMAUG00000021845	Srsf1	100	100.000	Mesocricetus_auratus
ENSSSCG00000017626	-	100	100.000	ENSMICG00000013639	-	100	100.000	Microcebus_murinus
ENSSSCG00000017626	-	100	100.000	ENSMOCG00000001996	Srsf1	100	100.000	Microtus_ochrogaster
ENSSSCG00000017626	-	88	85.202	ENSMMOG00000014354	srsf1a	98	78.099	Mola_mola
ENSSSCG00000017626	-	74	98.919	ENSMODG00000014781	-	63	98.919	Monodelphis_domestica
ENSSSCG00000017626	-	82	77.941	ENSMALG00000007763	-	79	79.695	Monopterus_albus
ENSSSCG00000017626	-	78	91.710	ENSMALG00000017129	-	75	88.601	Monopterus_albus
ENSSSCG00000017626	-	100	100.000	MGP_CAROLIEiJ_G0016943	Srsf1	100	100.000	Mus_caroli
ENSSSCG00000017626	-	100	100.000	ENSMUSG00000018379	Srsf1	100	100.000	Mus_musculus
ENSSSCG00000017626	-	100	100.000	MGP_PahariEiJ_G0018074	Srsf1	100	100.000	Mus_pahari
ENSSSCG00000017626	-	100	100.000	MGP_SPRETEiJ_G0017790	Srsf1	100	100.000	Mus_spretus
ENSSSCG00000017626	-	100	100.000	ENSMPUG00000015369	SRSF1	100	100.000	Mustela_putorius_furo
ENSSSCG00000017626	-	82	90.640	ENSMLUG00000023995	-	100	90.323	Myotis_lucifugus
ENSSSCG00000017626	-	100	100.000	ENSMLUG00000011040	SRSF1	100	100.000	Myotis_lucifugus
ENSSSCG00000017626	-	100	100.000	ENSNGAG00000011395	Srsf1	100	100.000	Nannospalax_galili
ENSSSCG00000017626	-	100	79.839	ENSNBRG00000008041	srsf1b	80	82.741	Neolamprologus_brichardi
ENSSSCG00000017626	-	100	100.000	ENSNLEG00000008088	-	100	100.000	Nomascus_leucogenys
ENSSSCG00000017626	-	51	98.425	ENSMEUG00000002783	-	100	98.425	Notamacropus_eugenii
ENSSSCG00000017626	-	74	100.000	ENSOPRG00000001234	-	100	100.000	Ochotona_princeps
ENSSSCG00000017626	-	100	99.597	ENSODEG00000011481	-	100	99.597	Octodon_degus
ENSSSCG00000017626	-	96	90.717	ENSONIG00000004860	-	81	90.863	Oreochromis_niloticus
ENSSSCG00000017626	-	78	91.710	ENSONIG00000013160	-	98	84.774	Oreochromis_niloticus
ENSSSCG00000017626	-	100	70.238	ENSOCUG00000010894	-	77	71.795	Oryctolagus_cuniculus
ENSSSCG00000017626	-	78	92.228	ENSORLG00000004580	srsf1a	98	85.185	Oryzias_latipes
ENSSSCG00000017626	-	88	86.547	ENSORLG00020009456	srsf1a	98	85.185	Oryzias_latipes_hni
ENSSSCG00000017626	-	88	86.547	ENSORLG00015014384	srsf1a	98	84.774	Oryzias_latipes_hsok
ENSSSCG00000017626	-	71	90.341	ENSOMEG00000004106	srsf1a	92	82.743	Oryzias_melastigma
ENSSSCG00000017626	-	100	100.000	ENSOGAG00000025950	-	100	100.000	Otolemur_garnettii
ENSSSCG00000017626	-	100	95.161	ENSOARG00000008323	SRSF1	100	95.161	Ovis_aries
ENSSSCG00000017626	-	100	100.000	ENSPPAG00000043403	-	100	100.000	Pan_paniscus
ENSSSCG00000017626	-	100	100.000	ENSPPRG00000004238	-	100	100.000	Panthera_pardus
ENSSSCG00000017626	-	100	100.000	ENSPTRG00000049077	SRSF1	100	100.000	Pan_troglodytes
ENSSSCG00000017626	-	100	100.000	ENSPANG00000022305	-	100	100.000	Papio_anubis
ENSSSCG00000017626	-	100	77.075	ENSPANG00000030275	-	100	76.680	Papio_anubis
ENSSSCG00000017626	-	100	95.968	ENSPKIG00000012857	srsf1b	100	95.968	Paramormyrops_kingsleyae
ENSSSCG00000017626	-	99	95.102	ENSPKIG00000007204	srsf1a	99	95.102	Paramormyrops_kingsleyae
ENSSSCG00000017626	-	79	90.955	ENSPSIG00000009000	-	100	92.000	Pelodiscus_sinensis
ENSSSCG00000017626	-	96	84.937	ENSPMGG00000005467	-	99	85.470	Periophthalmus_magnuspinnatus
ENSSSCG00000017626	-	88	83.857	ENSPMGG00000013112	-	99	85.654	Periophthalmus_magnuspinnatus
ENSSSCG00000017626	-	100	100.000	ENSPEMG00000021416	Srsf1	100	100.000	Peromyscus_maniculatus_bairdii
ENSSSCG00000017626	-	100	99.197	ENSPCIG00000006076	-	100	99.197	Phascolarctos_cinereus
ENSSSCG00000017626	-	79	89.899	ENSPFOG00000018325	-	86	85.714	Poecilia_formosa
ENSSSCG00000017626	-	79	89.899	ENSPLAG00000008416	srsf1b	98	85.714	Poecilia_latipinna
ENSSSCG00000017626	-	50	89.431	ENSPMEG00000014312	-	98	87.805	Poecilia_mexicana
ENSSSCG00000017626	-	79	89.899	ENSPMEG00000002388	-	98	85.714	Poecilia_mexicana
ENSSSCG00000017626	-	50	89.431	ENSPMEG00000020607	-	98	87.805	Poecilia_mexicana
ENSSSCG00000017626	-	78	92.228	ENSPREG00000009667	srsf1a	98	85.185	Poecilia_reticulata
ENSSSCG00000017626	-	100	100.000	ENSPPYG00000008240	SRSF1	100	100.000	Pongo_abelii
ENSSSCG00000017626	-	100	100.000	ENSPCAG00000005199	SRSF1	100	100.000	Procavia_capensis
ENSSSCG00000017626	-	80	76.733	ENSPCOG00000025736	-	95	76.531	Propithecus_coquereli
ENSSSCG00000017626	-	100	100.000	ENSPCOG00000023654	-	100	100.000	Propithecus_coquereli
ENSSSCG00000017626	-	75	100.000	ENSPVAG00000000519	-	75	100.000	Pteropus_vampyrus
ENSSSCG00000017626	-	94	93.162	ENSPNAG00000022241	srsf1a	98	90.947	Pygocentrus_nattereri
ENSSSCG00000017626	-	100	94.355	ENSPNAG00000014601	srsf1b	100	94.355	Pygocentrus_nattereri
ENSSSCG00000017626	-	100	100.000	ENSRNOG00000050323	Srsf1	100	100.000	Rattus_norvegicus
ENSSSCG00000017626	-	100	100.000	ENSRBIG00000034445	-	100	100.000	Rhinopithecus_bieti
ENSSSCG00000017626	-	100	100.000	ENSRROG00000041506	-	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000017626	-	100	100.000	ENSSBOG00000025377	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000017626	-	100	99.197	ENSSHAG00000002552	-	100	99.197	Sarcophilus_harrisii
ENSSSCG00000017626	-	99	96.356	ENSSFOG00015004800	srsf1a	99	96.356	Scleropages_formosus
ENSSSCG00000017626	-	94	87.083	ENSSMAG00000009719	-	100	86.275	Scophthalmus_maximus
ENSSSCG00000017626	-	78	90.674	ENSSMAG00000007018	-	98	83.128	Scophthalmus_maximus
ENSSSCG00000017626	-	88	85.650	ENSSDUG00000011303	-	98	84.362	Seriola_dumerili
ENSSSCG00000017626	-	100	76.494	ENSSDUG00000003929	-	99	77.510	Seriola_dumerili
ENSSSCG00000017626	-	95	76.695	ENSSLDG00000016895	-	99	76.113	Seriola_lalandi_dorsalis
ENSSSCG00000017626	-	78	91.192	ENSSLDG00000010543	-	98	84.362	Seriola_lalandi_dorsalis
ENSSSCG00000017626	-	79	83.838	ENSSLDG00000016868	-	99	82.661	Seriola_lalandi_dorsalis
ENSSSCG00000017626	-	74	100.000	ENSSARG00000010949	-	63	100.000	Sorex_araneus
ENSSSCG00000017626	-	100	98.814	ENSSPUG00000000804	-	100	98.814	Sphenodon_punctatus
ENSSSCG00000017626	-	79	88.038	ENSSPAG00000014152	-	99	84.556	Stegastes_partitus
ENSSSCG00000017626	-	78	92.746	ENSSPAG00000022562	-	98	85.597	Stegastes_partitus
ENSSSCG00000017626	-	74	98.370	ENSTGUG00000008416	-	100	98.370	Taeniopygia_guttata
ENSSSCG00000017626	-	78	91.192	ENSTRUG00000003691	srsf1a	98	84.362	Takifugu_rubripes
ENSSSCG00000017626	-	78	91.192	ENSTNIG00000016223	srsf1a	98	84.362	Tetraodon_nigroviridis
ENSSSCG00000017626	-	74	98.370	ENSTBEG00000015378	-	63	98.370	Tupaia_belangeri
ENSSSCG00000017626	-	74	100.000	ENSTTRG00000007310	SRSF1	100	100.000	Tursiops_truncatus
ENSSSCG00000017626	-	100	100.000	ENSUAMG00000009858	SRSF1	100	100.000	Ursus_americanus
ENSSSCG00000017626	-	100	100.000	ENSUMAG00000000455	-	100	100.000	Ursus_maritimus
ENSSSCG00000017626	-	100	99.597	ENSVPAG00000010094	SRSF1	100	99.597	Vicugna_pacos
ENSSSCG00000017626	-	100	100.000	ENSVVUG00000011882	-	100	100.000	Vulpes_vulpes
ENSSSCG00000017626	-	100	95.968	ENSXETG00000008954	srsf1	100	91.386	Xenopus_tropicalis
ENSSSCG00000017626	-	78	92.228	ENSXMAG00000011766	srsf1a	98	85.185	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000395	mRNA 5'-splice site recognition	-	ISS	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component