EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000017817 (Gene tree)
Gene ID: 100526074
Gene Symbol: PRPF8
Alias: PRPC8|Prp8|RP13|SNRNP220|hPrp8
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 37925 bases
Position: chr12:47857307-47895231
Accession: 100526074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000018877	RRM_4	PF10598.9	5.2e-48	1	1
ENSSSCP00000042460	RRM_4	PF10598.9	5.2e-48	1	1
ENSSSCP00000018877	U5_2-snRNA_bdg	PF10597.9	1e-73	1	1
ENSSSCP00000042460	U5_2-snRNA_bdg	PF10597.9	1e-73	1	1
ENSSSCP00000018877	PRO8NT	PF08082.11	2.1e-86	1	1
ENSSSCP00000042460	PRO8NT	PF08082.11	2.1e-86	1	1
ENSSSCP00000018877	U6-snRNA_bdg	PF10596.9	2.5e-89	1	1
ENSSSCP00000042460	U6-snRNA_bdg	PF10596.9	2.5e-89	1	1
ENSSSCP00000018877	PROCN	PF08083.11	2.7e-235	1	1
ENSSSCP00000042460	PROCN	PF08083.11	2.7e-235	1	1
ENSSSCP00000018877	PRP8_domainIV	PF12134.8	5.3e-130	1	1
ENSSSCP00000042460	PRP8_domainIV	PF12134.8	5.3e-130	1	1
ENSSSCP00000018877	PROCT	PF08084.11	2.1e-53	1	1
ENSSSCP00000042460	PROCT	PF08084.11	2.1e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000019391	PRPF8-202	7289	XM_021067568	ENSSSCP00000018877	2335 (aa)	XP_020923227	F1RHH8
ENSSSCT00000052389	PRPF8-201	10932	-	ENSSSCP00000042460	2335 (aa)	-	F1RHH8

Gene Model

Click here to download ENSSSCG00000017817's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000017817's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000017817	PRPF8	100	100.000	ENSG00000174231	PRPF8	100	100.000	Homo_sapiens
ENSSSCG00000017817	PRPF8	100	97.820	ENSAPOG00000010079	prpf8	100	97.820	Acanthochromis_polyacanthus
ENSSSCG00000017817	PRPF8	100	100.000	ENSAMEG00000007940	PRPF8	100	100.000	Ailuropoda_melanoleuca
ENSSSCG00000017817	PRPF8	100	95.549	ENSACIG00000018280	prpf8	100	95.925	Amphilophus_citrinellus
ENSSSCG00000017817	PRPF8	100	97.820	ENSAOCG00000010725	prpf8	100	97.820	Amphiprion_ocellaris
ENSSSCG00000017817	PRPF8	100	97.820	ENSAPEG00000014397	prpf8	100	97.820	Amphiprion_percula
ENSSSCG00000017817	PRPF8	100	97.263	ENSATEG00000010062	prpf8	100	97.263	Anabas_testudineus
ENSSSCG00000017817	PRPF8	96	99.555	ENSAPLG00000010357	PRPF8	100	99.555	Anas_platyrhynchos
ENSSSCG00000017817	PRPF8	83	97.477	ENSACAG00000014784	PRPF8	99	97.477	Anolis_carolinensis
ENSSSCG00000017817	PRPF8	100	100.000	ENSANAG00000032629	PRPF8	100	100.000	Aotus_nancymaae
ENSSSCG00000017817	PRPF8	100	97.447	ENSACLG00000020858	prpf8	100	97.447	Astatotilapia_calliptera
ENSSSCG00000017817	PRPF8	100	97.731	ENSAMXG00000020291	prpf8	100	97.731	Astyanax_mexicanus
ENSSSCG00000017817	PRPF8	100	100.000	ENSBTAG00000011488	PRPF8	100	100.000	Bos_taurus
ENSSSCG00000017817	PRPF8	99	86.444	WBGene00004187	prp-8	99	86.529	Caenorhabditis_elegans
ENSSSCG00000017817	PRPF8	100	100.000	ENSCJAG00000001911	PRPF8	100	100.000	Callithrix_jacchus
ENSSSCG00000017817	PRPF8	100	100.000	ENSCAFG00000019221	PRPF8	100	100.000	Canis_familiaris
ENSSSCG00000017817	PRPF8	96	100.000	ENSCAFG00020009943	PRPF8	100	100.000	Canis_lupus_dingo
ENSSSCG00000017817	PRPF8	100	100.000	ENSCHIG00000017499	PRPF8	100	100.000	Capra_hircus
ENSSSCG00000017817	PRPF8	100	100.000	ENSTSYG00000014120	PRPF8	100	100.000	Carlito_syrichta
ENSSSCG00000017817	PRPF8	96	97.773	ENSCAPG00000009459	PRPF8	99	97.773	Cavia_aperea
ENSSSCG00000017817	PRPF8	100	100.000	ENSCPOG00000010379	PRPF8	100	100.000	Cavia_porcellus
ENSSSCG00000017817	PRPF8	100	100.000	ENSCCAG00000031983	-	100	100.000	Cebus_capucinus
ENSSSCG00000017817	PRPF8	100	100.000	ENSCATG00000038595	PRPF8	100	100.000	Cercocebus_atys
ENSSSCG00000017817	PRPF8	100	100.000	ENSCLAG00000004388	PRPF8	100	100.000	Chinchilla_lanigera
ENSSSCG00000017817	PRPF8	100	100.000	ENSCSAG00000013929	PRPF8	100	100.000	Chlorocebus_sabaeus
ENSSSCG00000017817	PRPF8	81	99.738	ENSCHOG00000008590	PRPF8	88	99.738	Choloepus_hoffmanni
ENSSSCG00000017817	PRPF8	100	99.529	ENSCPBG00000020409	PRPF8	100	99.529	Chrysemys_picta_bellii
ENSSSCG00000017817	PRPF8	99	92.874	ENSCSAVG00000007825	-	100	91.280	Ciona_savignyi
ENSSSCG00000017817	PRPF8	100	100.000	ENSCANG00000043088	PRPF8	100	100.000	Colobus_angolensis_palliatus
ENSSSCG00000017817	PRPF8	74	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSSSCG00000017817	PRPF8	100	97.649	ENSCSEG00000007905	prpf8	100	97.649	Cynoglossus_semilaevis
ENSSSCG00000017817	PRPF8	100	97.609	ENSDARG00000026180	prpf8	100	97.609	Danio_rerio
ENSSSCG00000017817	PRPF8	93	99.954	ENSDNOG00000018471	PRPF8	99	99.954	Dasypus_novemcinctus
ENSSSCG00000017817	PRPF8	84	99.432	ENSDORG00000006185	Prpf8	96	99.432	Dipodomys_ordii
ENSSSCG00000017817	PRPF8	99	91.549	FBgn0033688	Prp8	98	91.122	Drosophila_melanogaster
ENSSSCG00000017817	PRPF8	100	94.518	ENSETEG00000017592	PRPF8	100	94.518	Echinops_telfairi
ENSSSCG00000017817	PRPF8	99	93.729	ENSEBUG00000006548	prpf8	99	93.729	Eptatretus_burgeri
ENSSSCG00000017817	PRPF8	100	100.000	ENSEASG00005009514	PRPF8	100	100.000	Equus_asinus_asinus
ENSSSCG00000017817	PRPF8	97	100.000	ENSECAG00000021318	PRPF8	100	100.000	Equus_caballus
ENSSSCG00000017817	PRPF8	67	100.000	ENSEEUG00000012120	-	67	100.000	Erinaceus_europaeus
ENSSSCG00000017817	PRPF8	98	96.547	ENSELUG00000007120	prpf8	99	96.547	Esox_lucius
ENSSSCG00000017817	PRPF8	100	100.000	ENSFCAG00000006297	PRPF8	100	100.000	Felis_catus
ENSSSCG00000017817	PRPF8	100	99.486	ENSFALG00000006628	PRPF8	100	99.486	Ficedula_albicollis
ENSSSCG00000017817	PRPF8	100	100.000	ENSFDAG00000004711	PRPF8	100	100.000	Fukomys_damarensis
ENSSSCG00000017817	PRPF8	100	97.438	ENSFHEG00000021084	prpf8	100	97.438	Fundulus_heteroclitus
ENSSSCG00000017817	PRPF8	100	95.389	ENSGMOG00000002028	prpf8	99	95.389	Gadus_morhua
ENSSSCG00000017817	PRPF8	100	99.443	ENSGALG00000002943	PRPF8	100	99.443	Gallus_gallus
ENSSSCG00000017817	PRPF8	99	97.520	ENSGAFG00000010337	prpf8	99	97.520	Gambusia_affinis
ENSSSCG00000017817	PRPF8	100	97.516	ENSGACG00000008504	prpf8	100	97.516	Gasterosteus_aculeatus
ENSSSCG00000017817	PRPF8	100	99.529	ENSGAGG00000008350	PRPF8	100	99.529	Gopherus_agassizii
ENSSSCG00000017817	PRPF8	100	100.000	ENSGGOG00000005516	PRPF8	100	100.000	Gorilla_gorilla
ENSSSCG00000017817	PRPF8	100	97.604	ENSHBUG00000016192	prpf8	100	97.604	Haplochromis_burtoni
ENSSSCG00000017817	PRPF8	100	100.000	ENSHGLG00000012029	PRPF8	100	100.000	Heterocephalus_glaber_female
ENSSSCG00000017817	PRPF8	100	100.000	ENSHGLG00100016494	PRPF8	100	100.000	Heterocephalus_glaber_male
ENSSSCG00000017817	PRPF8	100	97.563	ENSHCOG00000016414	prpf8	100	97.563	Hippocampus_comes
ENSSSCG00000017817	PRPF8	100	97.605	ENSIPUG00000023230	prpf8	100	97.605	Ictalurus_punctatus
ENSSSCG00000017817	PRPF8	100	100.000	ENSSTOG00000005128	PRPF8	100	100.000	Ictidomys_tridecemlineatus
ENSSSCG00000017817	PRPF8	100	97.816	ENSJJAG00000021159	Prpf8	100	97.816	Jaculus_jaculus
ENSSSCG00000017817	PRPF8	99	97.977	ENSKMAG00000016118	prpf8	99	97.977	Kryptolebias_marmoratus
ENSSSCG00000017817	PRPF8	100	97.478	ENSLBEG00000026903	prpf8	100	97.478	Labrus_bergylta
ENSSSCG00000017817	PRPF8	95	96.072	ENSLACG00000010479	PRPF8	99	98.551	Latimeria_chalumnae
ENSSSCG00000017817	PRPF8	99	97.731	ENSLOCG00000005409	prpf8	99	97.731	Lepisosteus_oculatus
ENSSSCG00000017817	PRPF8	100	100.000	ENSLAFG00000015445	PRPF8	100	100.000	Loxodonta_africana
ENSSSCG00000017817	PRPF8	100	100.000	ENSMFAG00000039995	PRPF8	100	100.000	Macaca_fascicularis
ENSSSCG00000017817	PRPF8	100	100.000	ENSMMUG00000004820	PRPF8	100	100.000	Macaca_mulatta
ENSSSCG00000017817	PRPF8	100	100.000	ENSMNEG00000035713	PRPF8	100	100.000	Macaca_nemestrina
ENSSSCG00000017817	PRPF8	100	100.000	ENSMLEG00000037937	PRPF8	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000017817	PRPF8	100	97.776	ENSMAMG00000008919	prpf8	100	97.776	Mastacembelus_armatus
ENSSSCG00000017817	PRPF8	100	97.447	ENSMZEG00005015073	prpf8	100	97.447	Maylandia_zebra
ENSSSCG00000017817	PRPF8	100	99.443	ENSMGAG00000004769	PRPF8	100	99.443	Meleagris_gallopavo
ENSSSCG00000017817	PRPF8	100	99.957	ENSMICG00000010320	PRPF8	100	99.957	Microcebus_murinus
ENSSSCG00000017817	PRPF8	100	99.957	ENSMOCG00000016838	Prpf8	100	99.957	Microtus_ochrogaster
ENSSSCG00000017817	PRPF8	100	97.305	ENSMMOG00000011887	prpf8	100	97.305	Mola_mola
ENSSSCG00000017817	PRPF8	100	99.829	ENSMODG00000010480	PRPF8	100	99.829	Monodelphis_domestica
ENSSSCG00000017817	PRPF8	97	97.713	ENSMALG00000003558	prpf8	100	97.713	Monopterus_albus
ENSSSCG00000017817	PRPF8	100	99.914	MGP_CAROLIEiJ_G0016740	Prpf8	100	99.914	Mus_caroli
ENSSSCG00000017817	PRPF8	100	99.914	ENSMUSG00000020850	Prpf8	100	99.914	Mus_musculus
ENSSSCG00000017817	PRPF8	100	99.829	MGP_PahariEiJ_G0017877	Prpf8	100	99.829	Mus_pahari
ENSSSCG00000017817	PRPF8	100	99.914	MGP_SPRETEiJ_G0017583	Prpf8	100	99.914	Mus_spretus
ENSSSCG00000017817	PRPF8	100	100.000	ENSMPUG00000013227	PRPF8	100	100.000	Mustela_putorius_furo
ENSSSCG00000017817	PRPF8	100	99.786	ENSMLUG00000002666	PRPF8	100	99.786	Myotis_lucifugus
ENSSSCG00000017817	PRPF8	100	98.201	ENSNGAG00000005305	Prpf8	100	98.201	Nannospalax_galili
ENSSSCG00000017817	PRPF8	100	97.489	ENSNBRG00000013127	prpf8	100	97.489	Neolamprologus_brichardi
ENSSSCG00000017817	PRPF8	97	97.695	ENSNLEG00000000897	PRPF8	98	97.695	Nomascus_leucogenys
ENSSSCG00000017817	PRPF8	99	98.044	ENSMEUG00000015999	PRPF8	100	98.044	Notamacropus_eugenii
ENSSSCG00000017817	PRPF8	100	98.458	ENSOPRG00000003102	PRPF8	100	98.458	Ochotona_princeps
ENSSSCG00000017817	PRPF8	100	100.000	ENSODEG00000008468	PRPF8	100	100.000	Octodon_degus
ENSSSCG00000017817	PRPF8	100	97.490	ENSONIG00000008153	prpf8	100	97.490	Oreochromis_niloticus
ENSSSCG00000017817	PRPF8	82	99.720	ENSOANG00000004250	PRPF8	97	99.720	Ornithorhynchus_anatinus
ENSSSCG00000017817	PRPF8	100	100.000	ENSOCUG00000000081	PRPF8	100	100.000	Oryctolagus_cuniculus
ENSSSCG00000017817	PRPF8	99	97.687	ENSORLG00000008036	prpf8	99	97.687	Oryzias_latipes
ENSSSCG00000017817	PRPF8	99	97.646	ENSORLG00020021070	prpf8	99	97.646	Oryzias_latipes_hni
ENSSSCG00000017817	PRPF8	99	97.687	ENSORLG00015002340	prpf8	99	97.687	Oryzias_latipes_hsok
ENSSSCG00000017817	PRPF8	99	96.187	ENSOMEG00000016866	prpf8	99	96.187	Oryzias_melastigma
ENSSSCG00000017817	PRPF8	100	99.872	ENSOARG00000013312	PRPF8	100	99.872	Ovis_aries
ENSSSCG00000017817	PRPF8	100	100.000	ENSPPAG00000042753	PRPF8	100	100.000	Pan_paniscus
ENSSSCG00000017817	PRPF8	100	100.000	ENSPPRG00000008746	PRPF8	100	100.000	Panthera_pardus
ENSSSCG00000017817	PRPF8	100	99.914	ENSPTIG00000019200	PRPF8	100	99.914	Panthera_tigris_altaica
ENSSSCG00000017817	PRPF8	100	100.000	ENSPTRG00000039576	PRPF8	100	100.000	Pan_troglodytes
ENSSSCG00000017817	PRPF8	99	99.057	ENSPANG00000024607	PRPF8	99	99.057	Papio_anubis
ENSSSCG00000017817	PRPF8	100	97.319	ENSPKIG00000011201	prpf8	100	97.319	Paramormyrops_kingsleyae
ENSSSCG00000017817	PRPF8	100	99.486	ENSPSIG00000013393	PRPF8	100	99.486	Pelodiscus_sinensis
ENSSSCG00000017817	PRPF8	100	99.957	ENSPEMG00000021699	Prpf8	100	99.957	Peromyscus_maniculatus_bairdii
ENSSSCG00000017817	PRPF8	96	93.853	ENSPMAG00000005438	prpf8	100	93.898	Petromyzon_marinus
ENSSSCG00000017817	PRPF8	100	99.829	ENSPCIG00000022603	PRPF8	100	99.866	Phascolarctos_cinereus
ENSSSCG00000017817	PRPF8	100	96.990	ENSPFOG00000007005	prpf8	100	96.990	Poecilia_formosa
ENSSSCG00000017817	PRPF8	100	96.403	ENSPLAG00000020777	prpf8	100	96.403	Poecilia_latipinna
ENSSSCG00000017817	PRPF8	100	96.990	ENSPMEG00000004051	prpf8	100	96.990	Poecilia_mexicana
ENSSSCG00000017817	PRPF8	100	97.645	ENSPREG00000021902	prpf8	100	97.645	Poecilia_reticulata
ENSSSCG00000017817	PRPF8	100	100.000	ENSPPYG00000007777	PRPF8	100	100.000	Pongo_abelii
ENSSSCG00000017817	PRPF8	90	99.647	ENSPCAG00000008938	PRPF8	90	99.647	Procavia_capensis
ENSSSCG00000017817	PRPF8	100	99.957	ENSPCOG00000015182	PRPF8	100	99.957	Propithecus_coquereli
ENSSSCG00000017817	PRPF8	93	100.000	ENSPVAG00000002134	PRPF8	93	100.000	Pteropus_vampyrus
ENSSSCG00000017817	PRPF8	100	97.604	ENSPNYG00000016356	prpf8	100	97.604	Pundamilia_nyererei
ENSSSCG00000017817	PRPF8	100	97.648	ENSPNAG00000009247	prpf8	100	97.648	Pygocentrus_nattereri
ENSSSCG00000017817	PRPF8	100	99.914	ENSRNOG00000003495	Prpf8	100	99.914	Rattus_norvegicus
ENSSSCG00000017817	PRPF8	100	100.000	ENSRBIG00000031219	PRPF8	100	100.000	Rhinopithecus_bieti
ENSSSCG00000017817	PRPF8	100	100.000	ENSRROG00000038014	PRPF8	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000017817	PRPF8	99	62.473	YHR165C	PRP8	95	62.516	Saccharomyces_cerevisiae
ENSSSCG00000017817	PRPF8	100	100.000	ENSSBOG00000029717	PRPF8	100	100.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000017817	PRPF8	100	99.786	ENSSHAG00000006167	PRPF8	100	99.786	Sarcophilus_harrisii
ENSSSCG00000017817	PRPF8	100	97.523	ENSSFOG00015013905	prpf8	100	97.523	Scleropages_formosus
ENSSSCG00000017817	PRPF8	100	97.394	ENSSMAG00000017736	prpf8	100	97.394	Scophthalmus_maximus
ENSSSCG00000017817	PRPF8	100	97.776	ENSSDUG00000003029	prpf8	100	97.776	Seriola_dumerili
ENSSSCG00000017817	PRPF8	68	98.936	ENSSLDG00000017096	prpf8	100	98.936	Seriola_lalandi_dorsalis
ENSSSCG00000017817	PRPF8	87	99.395	ENSSARG00000002892	PRPF8	87	99.395	Sorex_araneus
ENSSSCG00000017817	PRPF8	100	99.315	ENSSPUG00000007463	PRPF8	100	99.315	Sphenodon_punctatus
ENSSSCG00000017817	PRPF8	100	97.221	ENSSPAG00000015639	prpf8	100	97.221	Stegastes_partitus
ENSSSCG00000017817	PRPF8	52	99.651	ENSTGUG00000015597	-	95	99.651	Taeniopygia_guttata
ENSSSCG00000017817	PRPF8	100	99.486	ENSTGUG00000005648	-	100	99.486	Taeniopygia_guttata
ENSSSCG00000017817	PRPF8	100	97.563	ENSTRUG00000015906	prpf8	100	97.563	Takifugu_rubripes
ENSSSCG00000017817	PRPF8	95	98.746	ENSTNIG00000003460	prpf8	99	98.746	Tetraodon_nigroviridis
ENSSSCG00000017817	PRPF8	93	99.932	ENSTBEG00000006431	PRPF8	93	99.932	Tupaia_belangeri
ENSSSCG00000017817	PRPF8	100	99.400	ENSTTRG00000006869	PRPF8	100	99.400	Tursiops_truncatus
ENSSSCG00000017817	PRPF8	54	99.921	ENSUAMG00000015644	-	96	99.921	Ursus_americanus
ENSSSCG00000017817	PRPF8	100	99.743	ENSUMAG00000009385	PRPF8	100	99.743	Ursus_maritimus
ENSSSCG00000017817	PRPF8	71	99.505	ENSVPAG00000006063	-	71	99.505	Vicugna_pacos
ENSSSCG00000017817	PRPF8	100	100.000	ENSVVUG00000021695	PRPF8	99	100.000	Vulpes_vulpes
ENSSSCG00000017817	PRPF8	100	98.716	ENSXETG00000022259	prpf8	100	98.716	Xenopus_tropicalis
ENSSSCG00000017817	PRPF8	100	97.566	ENSXCOG00000012775	prpf8	100	97.566	Xiphophorus_couchianus
ENSSSCG00000017817	PRPF8	100	97.523	ENSXMAG00000008505	prpf8	100	97.523	Xiphophorus_maculatus