EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSSSCG00000017822 (Gene tree)
Gene ID
100525428
Gene Symbol
RPA1
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A1
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Plus strand
Length
40572 bases
Position
chr12:48009652-48050223
Accession
100525428
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000018882tRNA_anti-codonPF01336.252.8e-1211
ENSSSCP00000023457tRNA_anti-codonPF01336.253.3e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000029329RPA1-2014363-ENSSSCP00000023457603 (aa)-I3LHB2
ENSSSCT00000019397RPA1-2022721XM_003131822ENSSSCP00000018882585 (aa)XP_003131870F1RHH4
Gene Model
Click here to download ENSSSCG00000017822's gene model file
Pathways
Pathway IDPathway NameSource
ssc03030DNA replicationKEGG
ssc03420Nucleotide excision repairKEGG
ssc03430Mismatch repairKEGG
ssc03440Homologous recombinationKEGG
ssc03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000017822's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000017822RPA19962.396ENSAPOG00000011658rpa19964.758Acanthochromis_polyacanthus
ENSSSCG00000017822RPA19861.758ENSAPOG00000019409RPA18261.758Acanthochromis_polyacanthus
ENSSSCG00000017822RPA110091.556ENSAMEG00000007706RPA19891.556Ailuropoda_melanoleuca
ENSSSCG00000017822RPA19858.234ENSACIG00000007277rpa19957.958Amphilophus_citrinellus
ENSSSCG00000017822RPA19758.446ENSACIG00000012881RPA19958.305Amphilophus_citrinellus
ENSSSCG00000017822RPA19963.439ENSAOCG00000023376rpa19965.241Amphiprion_ocellaris
ENSSSCG00000017822RPA19662.584ENSAOCG00000009003RPA19755.468Amphiprion_ocellaris
ENSSSCG00000017822RPA19960.970ENSAPEG00000019132RPA19754.489Amphiprion_percula
ENSSSCG00000017822RPA19963.272ENSAPEG00000008634rpa19965.062Amphiprion_percula
ENSSSCG00000017822RPA19566.051ENSATEG00000006443RPA19755.063Anabas_testudineus
ENSSSCG00000017822RPA19763.979ENSATEG00000022024rpa19965.608Anabas_testudineus
ENSSSCG00000017822RPA19965.731ENSAPLG00000012442RPA110065.879Anas_platyrhynchos
ENSSSCG00000017822RPA19966.611ENSACAG00000014490RPA19966.945Anolis_carolinensis
ENSSSCG00000017822RPA110089.718ENSANAG00000023456RPA110090.734Aotus_nancymaae
ENSSSCG00000017822RPA19858.454ENSACLG00000005223RPA19758.199Astatotilapia_calliptera
ENSSSCG00000017822RPA19564.174ENSACLG00000006640rpa19965.350Astatotilapia_calliptera
ENSSSCG00000017822RPA19863.406ENSAMXG00000008418rpa19965.288Astyanax_mexicanus
ENSSSCG00000017822RPA110094.859ENSBTAG00000009711RPA19894.859Bos_taurus
ENSSSCG00000017822RPA110089.884ENSCJAG00000001848RPA19889.884Callithrix_jacchus
ENSSSCG00000017822RPA110090.547ENSCAFG00000019249RPA19890.547Canis_familiaris
ENSSSCG00000017822RPA110090.547ENSCAFG00020009847RPA19890.547Canis_lupus_dingo
ENSSSCG00000017822RPA110094.859ENSCHIG00000026308RPA19894.859Capra_hircus
ENSSSCG00000017822RPA110091.060ENSTSYG00000003482-9891.060Carlito_syrichta
ENSSSCG00000017822RPA110086.899ENSCPOG00000000035RPA19886.899Cavia_porcellus
ENSSSCG00000017822RPA110078.808ENSCCAG00000010981RPA19878.642Cebus_capucinus
ENSSSCG00000017822RPA110083.582ENSCLAG00000015045-9883.582Chinchilla_lanigera
ENSSSCG00000017822RPA19988.206ENSCLAG00000005185-9888.206Chinchilla_lanigera
ENSSSCG00000017822RPA110077.483ENSCSAG00000013833RPA19877.483Chlorocebus_sabaeus
ENSSSCG00000017822RPA17592.938ENSCHOG00000009454-10092.938Choloepus_hoffmanni
ENSSSCG00000017822RPA19888.605ENSCHOG00000013540-10088.605Choloepus_hoffmanni
ENSSSCG00000017822RPA19978.239ENSCPBG00000020377RPA19978.383Chrysemys_picta_bellii
ENSSSCG00000017822RPA19942.429ENSCING00000023482-9842.429Ciona_intestinalis
ENSSSCG00000017822RPA19890.592ENSCANG00000030911RPA110090.592Colobus_angolensis_palliatus
ENSSSCG00000017822RPA19988.760ENSCGRG00001008197Rpa19888.264Cricetulus_griseus_chok1gshd
ENSSSCG00000017822RPA18387.574ENSCGRG00000000582Rpa19986.982Cricetulus_griseus_crigri
ENSSSCG00000017822RPA19852.970ENSCSEG00000012726RPA19852.668Cynoglossus_semilaevis
ENSSSCG00000017822RPA19961.296ENSCSEG00000013066rpa19960.561Cynoglossus_semilaevis
ENSSSCG00000017822RPA19964.034ENSCVAG00000019431rpa19965.233Cyprinodon_variegatus
ENSSSCG00000017822RPA19563.529ENSCVAG00000013446-8463.529Cyprinodon_variegatus
ENSSSCG00000017822RPA19963.847ENSDARG00000003938rpa19863.682Danio_rerio
ENSSSCG00000017822RPA19991.181ENSDNOG00000017218RPA19891.181Dasypus_novemcinctus
ENSSSCG00000017822RPA110088.723ENSDORG00000006199Rpa19888.723Dipodomys_ordii
ENSSSCG00000017822RPA19943.072FBgn0010173RpA-709943.740Drosophila_melanogaster
ENSSSCG00000017822RPA18287.500ENSETEG00000017608RPA18287.500Echinops_telfairi
ENSSSCG00000017822RPA19993.000ENSEASG00005009372RPA110093.881Equus_asinus_asinus
ENSSSCG00000017822RPA110093.035ENSECAG00000023886RPA19893.035Equus_caballus
ENSSSCG00000017822RPA17293.095ENSEEUG00000002186-6893.095Erinaceus_europaeus
ENSSSCG00000017822RPA19862.752ENSELUG00000021071rpa19961.779Esox_lucius
ENSSSCG00000017822RPA18760.547ENSELUG00000006136RPA19960.547Esox_lucius
ENSSSCG00000017822RPA110089.404ENSFCAG00000006306RPA19889.404Felis_catus
ENSSSCG00000017822RPA110074.422ENSFALG00000006575RPA19874.257Ficedula_albicollis
ENSSSCG00000017822RPA19988.519ENSFDAG00000007720RPA19888.519Fukomys_damarensis
ENSSSCG00000017822RPA19862.121ENSFHEG00000003580rpa19960.197Fundulus_heteroclitus
ENSSSCG00000017822RPA19961.485ENSGMOG00000010382rpa19961.485Gadus_morhua
ENSSSCG00000017822RPA110075.166ENSGALG00000003072RPA19875.166Gallus_gallus
ENSSSCG00000017822RPA19763.393ENSGAFG00000020953RPA18963.393Gambusia_affinis
ENSSSCG00000017822RPA19862.500ENSGAFG00000012916rpa19961.194Gambusia_affinis
ENSSSCG00000017822RPA19960.862ENSGACG00000010856rpa19960.811Gasterosteus_aculeatus
ENSSSCG00000017822RPA19978.239ENSGAGG00000013611RPA19975.693Gopherus_agassizii
ENSSSCG00000017822RPA110091.453ENSGGOG00000014186RPA110091.453Gorilla_gorilla
ENSSSCG00000017822RPA19864.189ENSHBUG00000017773rpa19962.895Haplochromis_burtoni
ENSSSCG00000017822RPA19854.271ENSHBUG00000009348RPA19955.749Haplochromis_burtoni
ENSSSCG00000017822RPA19988.686ENSHGLG00000008846RPA19888.686Heterocephalus_glaber_female
ENSSSCG00000017822RPA110074.959ENSHGLG00100002005-9874.959Heterocephalus_glaber_male
ENSSSCG00000017822RPA110083.085ENSHGLG00100000799-9883.085Heterocephalus_glaber_male
ENSSSCG00000017822RPA19988.686ENSHGLG00100017755-9888.686Heterocephalus_glaber_male
ENSSSCG00000017822RPA19862.000ENSHCOG00000001401rpa19960.098Hippocampus_comes
ENSSSCG00000017822RPA19946.575ENSHCOG00000000351RPA19846.575Hippocampus_comes
ENSSSCG00000017822RPA19962.748ENSIPUG00000004400rpa19961.967Ictalurus_punctatus
ENSSSCG00000017822RPA19984.818ENSSTOG00000022475RPA19884.818Ictidomys_tridecemlineatus
ENSSSCG00000017822RPA19889.286ENSJJAG00000000876Rpa19889.286Jaculus_jaculus
ENSSSCG00000017822RPA19862.814ENSKMAG00000005605rpa19960.884Kryptolebias_marmoratus
ENSSSCG00000017822RPA19857.550ENSKMAG00000000234RPA19956.322Kryptolebias_marmoratus
ENSSSCG00000017822RPA19963.683ENSLBEG00000021604rpa19963.683Labrus_bergylta
ENSSSCG00000017822RPA19862.896ENSLBEG00000002281RPA17962.896Labrus_bergylta
ENSSSCG00000017822RPA18365.868ENSLACG00000007210RPA19965.669Latimeria_chalumnae
ENSSSCG00000017822RPA19868.581ENSLOCG00000006397rpa19966.557Lepisosteus_oculatus
ENSSSCG00000017822RPA19991.311ENSLAFG00000015354RPA19891.311Loxodonta_africana
ENSSSCG00000017822RPA18490.079ENSMFAG00000036138-9990.079Macaca_fascicularis
ENSSSCG00000017822RPA110082.587ENSMMUG00000002442-10080.851Macaca_mulatta
ENSSSCG00000017822RPA110089.552ENSMMUG00000011604-9989.552Macaca_mulatta
ENSSSCG00000017822RPA110079.216ENSMNEG00000029837-9887.097Macaca_nemestrina
ENSSSCG00000017822RPA19888.305ENSMNEG00000031632-9888.305Macaca_nemestrina
ENSSSCG00000017822RPA110083.361ENSMLEG00000038768-10083.361Mandrillus_leucophaeus
ENSSSCG00000017822RPA19863.426ENSMAMG00000020097RPA18861.830Mastacembelus_armatus
ENSSSCG00000017822RPA19962.957ENSMAMG00000017993rpa19966.302Mastacembelus_armatus
ENSSSCG00000017822RPA19858.454ENSMZEG00005024731RPA19758.199Maylandia_zebra
ENSSSCG00000017822RPA19963.289ENSMZEG00005007551rpa19962.895Maylandia_zebra
ENSSSCG00000017822RPA110075.166ENSMGAG00000005315RPA19875.166Meleagris_gallopavo
ENSSSCG00000017822RPA19989.500ENSMAUG00000010474Rpa19989.500Mesocricetus_auratus
ENSSSCG00000017822RPA110089.884ENSMICG00000012867RPA19889.884Microcebus_murinus
ENSSSCG00000017822RPA19988.000ENSMOCG00000013019Rpa19888.000Microtus_ochrogaster
ENSSSCG00000017822RPA19863.300ENSMMOG00000014292rpa19963.167Mola_mola
ENSSSCG00000017822RPA19956.928ENSMMOG00000010868RPA19758.319Mola_mola
ENSSSCG00000017822RPA19984.053ENSMODG00000010549RPA19784.053Monodelphis_domestica
ENSSSCG00000017822RPA19963.105ENSMALG00000011453rpa19963.394Monopterus_albus
ENSSSCG00000017822RPA19760.802ENSMALG00000001208RPA17960.802Monopterus_albus
ENSSSCG00000017822RPA19986.899MGP_CAROLIEiJ_G0016734Rpa19886.235Mus_caroli
ENSSSCG00000017822RPA19985.222ENSMUSG00000000751Rpa19884.072Mus_musculus
ENSSSCG00000017822RPA19987.789MGP_PahariEiJ_G0017871Rpa19886.964Mus_pahari
ENSSSCG00000017822RPA19985.246MGP_SPRETEiJ_G0017577Rpa19883.934Mus_spretus
ENSSSCG00000017822RPA110091.211ENSMPUG00000013119RPA19891.211Mustela_putorius_furo
ENSSSCG00000017822RPA19990.484ENSMLUG00000006113RPA19690.484Myotis_lucifugus
ENSSSCG00000017822RPA19887.946ENSNGAG00000004522Rpa19487.946Nannospalax_galili
ENSSSCG00000017822RPA19663.966ENSNBRG00000020595rpa19965.125Neolamprologus_brichardi
ENSSSCG00000017822RPA19856.661ENSNBRG00000009672RPA19557.069Neolamprologus_brichardi
ENSSSCG00000017822RPA110088.723ENSNLEG00000017149RPA19888.723Nomascus_leucogenys
ENSSSCG00000017822RPA110073.466ENSMEUG00000006714RPA19973.134Notamacropus_eugenii
ENSSSCG00000017822RPA19885.427ENSODEG00000009038RPA19685.427Octodon_degus
ENSSSCG00000017822RPA19963.651ENSONIG00000013135rpa19962.316Oreochromis_niloticus
ENSSSCG00000017822RPA19983.582ENSOANG00000010880RPA19983.748Ornithorhynchus_anatinus
ENSSSCG00000017822RPA110086.572ENSOCUG00000001504RPA19886.572Oryctolagus_cuniculus
ENSSSCG00000017822RPA19963.431ENSORLG00000003368RPA18863.431Oryzias_latipes
ENSSSCG00000017822RPA19963.378ENSORLG00000004856rpa19963.378Oryzias_latipes
ENSSSCG00000017822RPA19963.545ENSORLG00020008980rpa19963.545Oryzias_latipes_hni
ENSSSCG00000017822RPA19961.947ENSORLG00020015284RPA18861.947Oryzias_latipes_hni
ENSSSCG00000017822RPA17162.560ENSORLG00015005867-9462.560Oryzias_latipes_hsok
ENSSSCG00000017822RPA19762.556ENSORLG00015020383RPA19754.647Oryzias_latipes_hsok
ENSSSCG00000017822RPA19963.545ENSORLG00015013982rpa19963.545Oryzias_latipes_hsok
ENSSSCG00000017822RPA19960.601ENSOMEG00000004704rpa19960.601Oryzias_melastigma
ENSSSCG00000017822RPA19757.094ENSOMEG00000011040RPA110057.968Oryzias_melastigma
ENSSSCG00000017822RPA110090.381ENSOGAG00000005581-9890.381Otolemur_garnettii
ENSSSCG00000017822RPA19487.868ENSOGAG00000029379-9787.868Otolemur_garnettii
ENSSSCG00000017822RPA110094.859ENSOARG00000014479RPA19894.859Ovis_aries
ENSSSCG00000017822RPA110089.552ENSPPAG00000039680RPA19889.552Pan_paniscus
ENSSSCG00000017822RPA110089.570ENSPPRG00000011807RPA19889.570Panthera_pardus
ENSSSCG00000017822RPA110089.238ENSPTIG00000007898RPA19889.238Panthera_tigris_altaica
ENSSSCG00000017822RPA110089.552ENSPTRG00000008539RPA19889.552Pan_troglodytes
ENSSSCG00000017822RPA110089.386ENSPANG00000024592RPA19889.386Papio_anubis
ENSSSCG00000017822RPA19461.754ENSPKIG00000008053rpa19461.352Paramormyrops_kingsleyae
ENSSSCG00000017822RPA19977.963ENSPSIG00000015617RPA19977.796Pelodiscus_sinensis
ENSSSCG00000017822RPA19956.610ENSPMGG00000000543RPA19957.477Periophthalmus_magnuspinnatus
ENSSSCG00000017822RPA19864.583ENSPMGG00000011589rpa19964.757Periophthalmus_magnuspinnatus
ENSSSCG00000017822RPA19989.333ENSPEMG00000021061Rpa19889.333Peromyscus_maniculatus_bairdii
ENSSSCG00000017822RPA110082.285ENSPCIG00000019049RPA19782.285Phascolarctos_cinereus
ENSSSCG00000017822RPA19862.838ENSPFOG00000003987rpa19961.093Poecilia_formosa
ENSSSCG00000017822RPA19862.500ENSPLAG00000004984rpa19960.927Poecilia_latipinna
ENSSSCG00000017822RPA19464.865ENSPLAG00000008844-8664.865Poecilia_latipinna
ENSSSCG00000017822RPA19863.007ENSPMEG00000020602rpa19962.943Poecilia_mexicana
ENSSSCG00000017822RPA19263.942ENSPMEG00000003627-8863.942Poecilia_mexicana
ENSSSCG00000017822RPA19455.888ENSPREG00000010174rpa19654.577Poecilia_reticulata
ENSSSCG00000017822RPA19863.170ENSPREG00000010119RPA18863.309Poecilia_reticulata
ENSSSCG00000017822RPA110090.713ENSPCOG00000001799RPA19890.713Propithecus_coquereli
ENSSSCG00000017822RPA110092.869ENSPVAG00000002149RPA19892.869Pteropus_vampyrus
ENSSSCG00000017822RPA19858.132ENSPNYG00000024165RPA19757.878Pundamilia_nyererei
ENSSSCG00000017822RPA19864.358ENSPNYG00000016316rpa19965.295Pundamilia_nyererei
ENSSSCG00000017822RPA19955.556ENSPNAG00000008599rpa19656.971Pygocentrus_nattereri
ENSSSCG00000017822RPA19988.833ENSRNOG00000003123Rpa19888.833Rattus_norvegicus
ENSSSCG00000017822RPA110089.404ENSRBIG00000036587RPA19888.557Rhinopithecus_bieti
ENSSSCG00000017822RPA110084.106ENSRROG00000043278RPA19883.250Rhinopithecus_roxellana
ENSSSCG00000017822RPA19732.397YAR007CRFA19732.397Saccharomyces_cerevisiae
ENSSSCG00000017822RPA110086.070ENSSBOG00000030233RPA19986.070Saimiri_boliviensis_boliviensis
ENSSSCG00000017822RPA19984.106ENSSHAG00000007969RPA19784.437Sarcophilus_harrisii
ENSSSCG00000017822RPA19965.116ENSSFOG00015005362rpa19264.132Scleropages_formosus
ENSSSCG00000017822RPA19663.029ENSSMAG00000019746RPA18563.029Scophthalmus_maximus
ENSSSCG00000017822RPA19964.667ENSSDUG00000011949rpa19667.864Seriola_dumerili
ENSSSCG00000017822RPA19466.051ENSSDUG00000016358RPA18565.533Seriola_dumerili
ENSSSCG00000017822RPA19366.357ENSSLDG00000020784RPA18265.982Seriola_lalandi_dorsalis
ENSSSCG00000017822RPA19865.372ENSSLDG00000011806rpa19667.684Seriola_lalandi_dorsalis
ENSSSCG00000017822RPA110070.813ENSSARG00000007506RPA19970.149Sorex_araneus
ENSSSCG00000017822RPA19973.154ENSSPUG00000007223RPA19973.154Sphenodon_punctatus
ENSSSCG00000017822RPA19963.289ENSSPAG00000009903rpa19963.289Stegastes_partitus
ENSSSCG00000017822RPA19858.347ENSSPAG00000011165RPA19759.511Stegastes_partitus
ENSSSCG00000017822RPA110073.841ENSTGUG00000005775RPA19873.841Taeniopygia_guttata
ENSSSCG00000017822RPA19963.819ENSTRUG00000003616rpa19963.819Takifugu_rubripes
ENSSSCG00000017822RPA19464.019ENSTRUG00000000405RPA17962.697Takifugu_rubripes
ENSSSCG00000017822RPA19963.907ENSTNIG00000016199rpa19963.218Tetraodon_nigroviridis
ENSSSCG00000017822RPA18997.561ENSTBEG00000002709RPA18197.674Tupaia_belangeri
ENSSSCG00000017822RPA19993.355ENSTTRG00000001169RPA19893.355Tursiops_truncatus
ENSSSCG00000017822RPA19094.231ENSUAMG00000015676RPA19794.231Ursus_americanus
ENSSSCG00000017822RPA110092.650ENSUMAG00000009328RPA110092.650Ursus_maritimus
ENSSSCG00000017822RPA110092.040ENSVPAG00000009443RPA19892.040Vicugna_pacos
ENSSSCG00000017822RPA110090.879ENSVVUG00000021715RPA19890.879Vulpes_vulpes
ENSSSCG00000017822RPA19973.597ENSXETG00000013538rpa19973.762Xenopus_tropicalis
ENSSSCG00000017822RPA19557.914ENSXCOG00000009899-9957.914Xiphophorus_couchianus
ENSSSCG00000017822RPA19360.823ENSXCOG00000010068rpa19460.701Xiphophorus_couchianus
ENSSSCG00000017822RPA19861.486ENSXMAG00000004102rpa19961.431Xiphophorus_maculatus
ENSSSCG00000017822RPA19863.170ENSXMAG00000010333RPA18463.170Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us