EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000017826 (Gene tree)
Gene ID: 100511407
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 214902 bases
Position: chr12:48171859-48386760
Accession: 100511407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000031475	EST1	PF10374.9	4.6e-15	1	1
ENSSSCP00000018886	EST1	PF10374.9	5.3e-15	1	1
ENSSSCP00000031475	EST1_DNA_bind	PF10373.9	2.6e-60	1	1
ENSSSCP00000018886	EST1_DNA_bind	PF10373.9	2.9e-60	1	1
ENSSSCP00000018886	PIN_4	PF13638.6	3.1e-21	1	1
ENSSSCP00000031475	PIN_4	PF13638.6	3.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000043650	SMG6-202	6387	XM_021067589	ENSSSCP00000031475	1321 (aa)	XP_020923248	A0A286ZIX9
ENSSSCT00000019401	SMG6-201	6745	XM_021067586	ENSSSCP00000018886	1412 (aa)	XP_020923245	F1RHH0

Gene Model

Click here to download ENSSSCG00000017826's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000017826's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000017826	SMG6	100	91.831	ENSG00000070366	SMG6	100	96.869	Homo_sapiens
ENSSSCG00000017826	SMG6	83	55.224	ENSAPOG00000019448	smg6	74	55.730	Acanthochromis_polyacanthus
ENSSSCG00000017826	SMG6	100	94.848	ENSAMEG00000007632	SMG6	100	94.848	Ailuropoda_melanoleuca
ENSSSCG00000017826	SMG6	72	60.480	ENSACIG00000012997	smg6	78	55.422	Amphilophus_citrinellus
ENSSSCG00000017826	SMG6	83	55.205	ENSAPEG00000019101	smg6	74	55.469	Amphiprion_percula
ENSSSCG00000017826	SMG6	83	55.869	ENSATEG00000006483	smg6	73	55.685	Anabas_testudineus
ENSSSCG00000017826	SMG6	90	57.627	ENSACAG00000011783	SMG6	99	58.661	Anolis_carolinensis
ENSSSCG00000017826	SMG6	100	92.254	ENSANAG00000035760	SMG6	100	92.254	Aotus_nancymaae
ENSSSCG00000017826	SMG6	72	59.447	ENSACLG00000005288	smg6	80	55.625	Astatotilapia_calliptera
ENSSSCG00000017826	SMG6	69	63.572	ENSAMXG00000017326	smg6	98	50.878	Astyanax_mexicanus
ENSSSCG00000017826	SMG6	100	95.397	ENSBTAG00000000267	SMG6	100	95.397	Bos_taurus
ENSSSCG00000017826	SMG6	100	91.972	ENSCJAG00000001820	SMG6	100	91.972	Callithrix_jacchus
ENSSSCG00000017826	SMG6	100	94.625	ENSCAFG00000019260	SMG6	100	94.625	Canis_familiaris
ENSSSCG00000017826	SMG6	100	94.625	ENSCAFG00020009770	SMG6	100	94.625	Canis_lupus_dingo
ENSSSCG00000017826	SMG6	100	95.184	ENSCHIG00000021998	SMG6	100	95.184	Capra_hircus
ENSSSCG00000017826	SMG6	100	92.254	ENSTSYG00000003406	SMG6	100	96.673	Carlito_syrichta
ENSSSCG00000017826	SMG6	98	76.801	ENSCAPG00000016197	SMG6	99	82.436	Cavia_aperea
ENSSSCG00000017826	SMG6	100	90.218	ENSCPOG00000014878	SMG6	100	90.218	Cavia_porcellus
ENSSSCG00000017826	SMG6	100	92.324	ENSCCAG00000035801	SMG6	100	92.324	Cebus_capucinus
ENSSSCG00000017826	SMG6	100	92.254	ENSCATG00000031956	SMG6	100	92.254	Cercocebus_atys
ENSSSCG00000017826	SMG6	100	92.042	ENSCLAG00000006748	SMG6	100	92.042	Chinchilla_lanigera
ENSSSCG00000017826	SMG6	100	92.817	ENSCSAG00000013800	SMG6	100	92.817	Chlorocebus_sabaeus
ENSSSCG00000017826	SMG6	55	97.015	ENSCHOG00000005024	-	65	97.015	Choloepus_hoffmanni
ENSSSCG00000017826	SMG6	100	72.550	ENSCPBG00000020369	SMG6	100	73.106	Chrysemys_picta_bellii
ENSSSCG00000017826	SMG6	99	92.249	ENSCANG00000031764	SMG6	100	96.869	Colobus_angolensis_palliatus
ENSSSCG00000017826	SMG6	56	87.166	ENSCGRG00001019595	Smg6	98	87.468	Cricetulus_griseus_chok1gshd
ENSSSCG00000017826	SMG6	99	83.954	ENSCGRG00000007782	Smg6	99	84.765	Cricetulus_griseus_crigri
ENSSSCG00000017826	SMG6	86	54.231	ENSCSEG00000012757	smg6	81	54.253	Cynoglossus_semilaevis
ENSSSCG00000017826	SMG6	72	58.076	ENSCVAG00000012789	smg6	74	54.056	Cyprinodon_variegatus
ENSSSCG00000017826	SMG6	100	50.705	ENSDARG00000100481	smg6	100	51.484	Danio_rerio
ENSSSCG00000017826	SMG6	100	92.465	ENSDNOG00000048283	SMG6	100	92.465	Dasypus_novemcinctus
ENSSSCG00000017826	SMG6	100	88.710	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSSSCG00000017826	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSSSCG00000017826	SMG6	74	50.486	ENSEBUG00000005059	smg6	73	48.928	Eptatretus_burgeri
ENSSSCG00000017826	SMG6	99	95.467	ENSEASG00005009318	SMG6	99	95.467	Equus_asinus_asinus
ENSSSCG00000017826	SMG6	99	95.184	ENSECAG00000006519	SMG6	99	95.184	Equus_caballus
ENSSSCG00000017826	SMG6	100	82.861	ENSEEUG00000003493	SMG6	100	82.861	Erinaceus_europaeus
ENSSSCG00000017826	SMG6	72	60.833	ENSELUG00000005934	smg6	67	56.861	Esox_lucius
ENSSSCG00000017826	SMG6	100	95.757	ENSFCAG00000028817	SMG6	100	95.757	Felis_catus
ENSSSCG00000017826	SMG6	98	72.527	ENSFALG00000006538	SMG6	99	72.598	Ficedula_albicollis
ENSSSCG00000017826	SMG6	100	91.549	ENSFDAG00000015106	SMG6	100	91.549	Fukomys_damarensis
ENSSSCG00000017826	SMG6	83	53.276	ENSFHEG00000013282	smg6	75	53.780	Fundulus_heteroclitus
ENSSSCG00000017826	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSSSCG00000017826	SMG6	100	71.975	ENSGALG00000003108	SMG6	98	72.045	Gallus_gallus
ENSSSCG00000017826	SMG6	83	54.046	ENSGAFG00000000379	smg6	74	54.317	Gambusia_affinis
ENSSSCG00000017826	SMG6	91	54.139	ENSGACG00000020521	smg6	99	54.076	Gasterosteus_aculeatus
ENSSSCG00000017826	SMG6	99	71.697	ENSGAGG00000025617	SMG6	99	73.200	Gopherus_agassizii
ENSSSCG00000017826	SMG6	100	92.606	ENSGGOG00000017156	SMG6	100	92.606	Gorilla_gorilla
ENSSSCG00000017826	SMG6	83	54.695	ENSHBUG00000021311	smg6	74	55.931	Haplochromis_burtoni
ENSSSCG00000017826	SMG6	100	91.561	ENSHGLG00000012882	SMG6	100	91.561	Heterocephalus_glaber_female
ENSSSCG00000017826	SMG6	100	91.632	ENSHGLG00100017815	SMG6	100	91.632	Heterocephalus_glaber_male
ENSSSCG00000017826	SMG6	77	56.790	ENSHCOG00000008761	smg6	97	54.021	Hippocampus_comes
ENSSSCG00000017826	SMG6	86	53.852	ENSIPUG00000012493	smg6	78	53.571	Ictalurus_punctatus
ENSSSCG00000017826	SMG6	100	93.310	ENSSTOG00000028127	SMG6	100	93.310	Ictidomys_tridecemlineatus
ENSSSCG00000017826	SMG6	82	87.948	ENSJJAG00000015367	Smg6	95	86.222	Jaculus_jaculus
ENSSSCG00000017826	SMG6	74	58.777	ENSKMAG00000000279	smg6	75	54.859	Kryptolebias_marmoratus
ENSSSCG00000017826	SMG6	85	53.917	ENSLBEG00000002184	smg6	75	54.336	Labrus_bergylta
ENSSSCG00000017826	SMG6	59	58.231	ENSLACG00000000806	-	98	59.486	Latimeria_chalumnae
ENSSSCG00000017826	SMG6	73	65.295	ENSLOCG00000006448	smg6	89	59.533	Lepisosteus_oculatus
ENSSSCG00000017826	SMG6	100	92.183	ENSLAFG00000001261	SMG6	100	92.183	Loxodonta_africana
ENSSSCG00000017826	SMG6	100	92.817	ENSMFAG00000003394	SMG6	100	92.817	Macaca_fascicularis
ENSSSCG00000017826	SMG6	100	92.746	ENSMMUG00000023161	SMG6	100	92.746	Macaca_mulatta
ENSSSCG00000017826	SMG6	100	88.062	ENSMNEG00000044592	SMG6	100	88.062	Macaca_nemestrina
ENSSSCG00000017826	SMG6	94	96.970	ENSMLEG00000029353	SMG6	99	96.992	Mandrillus_leucophaeus
ENSSSCG00000017826	SMG6	83	56.182	ENSMAMG00000020119	smg6	79	56.416	Mastacembelus_armatus
ENSSSCG00000017826	SMG6	72	59.631	ENSMZEG00005024736	smg6	74	55.748	Maylandia_zebra
ENSSSCG00000017826	SMG6	77	67.183	ENSMGAG00000005401	-	99	66.352	Meleagris_gallopavo
ENSSSCG00000017826	SMG6	100	94.296	ENSMICG00000012913	SMG6	100	94.296	Microcebus_murinus
ENSSSCG00000017826	SMG6	100	48.293	ENSMMOG00000010883	smg6	100	49.396	Mola_mola
ENSSSCG00000017826	SMG6	100	85.875	ENSMODG00000010622	SMG6	100	85.875	Monodelphis_domestica
ENSSSCG00000017826	SMG6	83	55.102	ENSMALG00000001106	smg6	73	55.765	Monopterus_albus
ENSSSCG00000017826	SMG6	100	91.050	MGP_CAROLIEiJ_G0016729	Smg6	100	91.050	Mus_caroli
ENSSSCG00000017826	SMG6	100	90.909	ENSMUSG00000038290	Smg6	100	90.909	Mus_musculus
ENSSSCG00000017826	SMG6	100	90.550	MGP_PahariEiJ_G0017866	Smg6	100	90.550	Mus_pahari
ENSSSCG00000017826	SMG6	100	90.839	MGP_SPRETEiJ_G0017572	Smg6	100	90.839	Mus_spretus
ENSSSCG00000017826	SMG6	100	94.767	ENSMPUG00000013046	SMG6	100	94.767	Mustela_putorius_furo
ENSSSCG00000017826	SMG6	100	93.847	ENSMLUG00000005739	SMG6	100	93.847	Myotis_lucifugus
ENSSSCG00000017826	SMG6	99	90.038	ENSNGAG00000007287	Smg6	99	90.397	Nannospalax_galili
ENSSSCG00000017826	SMG6	83	53.798	ENSNBRG00000009511	smg6	81	55.118	Neolamprologus_brichardi
ENSSSCG00000017826	SMG6	99	92.173	ENSNLEG00000017171	SMG6	100	96.673	Nomascus_leucogenys
ENSSSCG00000017826	SMG6	99	81.866	ENSMEUG00000015804	SMG6	99	82.433	Notamacropus_eugenii
ENSSSCG00000017826	SMG6	65	92.308	ENSOPRG00000000579	SMG6	85	98.421	Ochotona_princeps
ENSSSCG00000017826	SMG6	100	85.021	ENSODEG00000008038	SMG6	100	85.021	Octodon_degus
ENSSSCG00000017826	SMG6	100	51.369	ENSONIG00000005594	smg6	100	52.276	Oreochromis_niloticus
ENSSSCG00000017826	SMG6	100	92.616	ENSOCUG00000013018	SMG6	100	92.616	Oryctolagus_cuniculus
ENSSSCG00000017826	SMG6	83	54.216	ENSORLG00000003317	smg6	74	55.181	Oryzias_latipes
ENSSSCG00000017826	SMG6	83	54.344	ENSORLG00020015343	smg6	74	54.917	Oryzias_latipes_hni
ENSSSCG00000017826	SMG6	83	54.252	ENSORLG00015020454	smg6	74	55.259	Oryzias_latipes_hsok
ENSSSCG00000017826	SMG6	83	53.233	ENSOMEG00000010838	smg6	75	54.107	Oryzias_melastigma
ENSSSCG00000017826	SMG6	100	92.892	ENSOGAG00000004483	SMG6	100	92.892	Otolemur_garnettii
ENSSSCG00000017826	SMG6	99	94.813	ENSOARG00000015076	SMG6	100	95.076	Ovis_aries
ENSSSCG00000017826	SMG6	100	92.676	ENSPPAG00000043296	SMG6	100	92.676	Pan_paniscus
ENSSSCG00000017826	SMG6	100	95.827	ENSPPRG00000014581	SMG6	100	95.827	Panthera_pardus
ENSSSCG00000017826	SMG6	99	95.583	ENSPTIG00000008925	SMG6	100	98.434	Panthera_tigris_altaica
ENSSSCG00000017826	SMG6	100	92.676	ENSPTRG00000008544	SMG6	100	96.869	Pan_troglodytes
ENSSSCG00000017826	SMG6	100	92.746	ENSPANG00000024588	SMG6	100	92.746	Papio_anubis
ENSSSCG00000017826	SMG6	95	70.889	ENSPSIG00000006660	SMG6	96	70.968	Pelodiscus_sinensis
ENSSSCG00000017826	SMG6	98	60.997	ENSPMGG00000000844	smg6	100	60.997	Periophthalmus_magnuspinnatus
ENSSSCG00000017826	SMG6	100	91.825	ENSPEMG00000020707	Smg6	100	91.825	Peromyscus_maniculatus_bairdii
ENSSSCG00000017826	SMG6	100	51.436	ENSPFOG00000012035	smg6	100	51.539	Poecilia_formosa
ENSSSCG00000017826	SMG6	77	56.701	ENSPLAG00000017660	smg6	74	53.955	Poecilia_latipinna
ENSSSCG00000017826	SMG6	77	56.727	ENSPMEG00000000258	smg6	74	54.268	Poecilia_mexicana
ENSSSCG00000017826	SMG6	83	54.360	ENSPREG00000010066	smg6	74	54.317	Poecilia_reticulata
ENSSSCG00000017826	SMG6	100	87.280	ENSPPYG00000007790	SMG6	100	87.280	Pongo_abelii
ENSSSCG00000017826	SMG6	100	87.887	ENSPCAG00000000552	SMG6	100	87.887	Procavia_capensis
ENSSSCG00000017826	SMG6	100	93.873	ENSPCOG00000020925	SMG6	100	93.873	Propithecus_coquereli
ENSSSCG00000017826	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSSSCG00000017826	SMG6	83	55.618	ENSPNYG00000024151	smg6	100	48.352	Pundamilia_nyererei
ENSSSCG00000017826	SMG6	86	53.056	ENSPNAG00000015480	smg6	79	63.375	Pygocentrus_nattereri
ENSSSCG00000017826	SMG6	100	91.402	ENSRNOG00000003041	Smg6	100	91.402	Rattus_norvegicus
ENSSSCG00000017826	SMG6	100	92.394	ENSRBIG00000024746	SMG6	100	92.394	Rhinopithecus_bieti
ENSSSCG00000017826	SMG6	100	92.465	ENSRROG00000030423	SMG6	100	96.477	Rhinopithecus_roxellana
ENSSSCG00000017826	SMG6	100	92.254	ENSSBOG00000022518	SMG6	100	90.563	Saimiri_boliviensis_boliviensis
ENSSSCG00000017826	SMG6	99	85.129	ENSSHAG00000010045	SMG6	98	84.989	Sarcophilus_harrisii
ENSSSCG00000017826	SMG6	72	62.698	ENSSFOG00015005436	smg6	74	56.208	Scleropages_formosus
ENSSSCG00000017826	SMG6	83	55.486	ENSSMAG00000019777	smg6	73	55.113	Scophthalmus_maximus
ENSSSCG00000017826	SMG6	89	52.967	ENSSDUG00000016412	smg6	79	52.838	Seriola_dumerili
ENSSSCG00000017826	SMG6	90	51.503	ENSSLDG00000020747	smg6	83	52.042	Seriola_lalandi_dorsalis
ENSSSCG00000017826	SMG6	99	70.482	ENSSPUG00000007152	SMG6	99	70.412	Sphenodon_punctatus
ENSSSCG00000017826	SMG6	72	59.358	ENSSPAG00000015633	smg6	74	54.917	Stegastes_partitus
ENSSSCG00000017826	SMG6	100	72.370	ENSTGUG00000005836	SMG6	100	72.511	Taeniopygia_guttata
ENSSSCG00000017826	SMG6	83	55.360	ENSTRUG00000000358	smg6	81	55.932	Takifugu_rubripes
ENSSSCG00000017826	SMG6	100	49.836	ENSTNIG00000016164	smg6	100	50.066	Tetraodon_nigroviridis
ENSSSCG00000017826	SMG6	100	88.380	ENSTBEG00000011424	SMG6	100	88.380	Tupaia_belangeri
ENSSSCG00000017826	SMG6	89	97.119	ENSTTRG00000001175	SMG6	91	92.273	Tursiops_truncatus
ENSSSCG00000017826	SMG6	100	94.989	ENSUAMG00000025152	SMG6	100	94.919	Ursus_americanus
ENSSSCG00000017826	SMG6	99	94.973	ENSUMAG00000009306	SMG6	100	95.228	Ursus_maritimus
ENSSSCG00000017826	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSSSCG00000017826	SMG6	100	94.413	ENSVVUG00000021727	SMG6	100	94.413	Vulpes_vulpes
ENSSSCG00000017826	SMG6	98	60.113	ENSXETG00000023799	SMG6	99	59.972	Xenopus_tropicalis
ENSSSCG00000017826	SMG6	83	55.573	ENSXCOG00000009867	smg6	74	55.449	Xiphophorus_couchianus
ENSSSCG00000017826	SMG6	83	54.674	ENSXMAG00000010321	smg6	74	54.147	Xiphophorus_maculatus