EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000020799 (Gene tree)
Gene ID
100622181
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Minus strand
Length
39876 bases
Position
chr3:126865901-126905776
Accession
100622181
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000053895CPSF73-100_CPF11718.83.1e-5511
ENSSSCP00000024676CPSF73-100_CPF11718.83.8e-5511
ENSSSCP00000053895Beta-CaspPF10996.86.8e-3411
ENSSSCP00000024676Beta-CaspPF10996.88e-3411
ENSSSCP00000024676Lactamase_BPF00753.271.8e-1811
ENSSSCP00000053895Lactamase_BPF00753.274.3e-0811
ENSSSCP00000053895RMMBLPF07521.121.9e-2111
ENSSSCP00000024676RMMBLPF07521.122.2e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000062671CPSF3-2025278-ENSSSCP00000053895630 (aa)-A0A287BCS5
ENSSSCT00000027309CPSF3-2015440XM_003354926ENSSSCP00000024676684 (aa)XP_003354974I3LKR1
Gene Model
Click here to download ENSSSCG00000020799's gene model file
Pathways
Pathway IDPathway NameSource
ssc03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000020799's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000020799CPSF36540.044ENSSSCG00000003339INTS117440.044
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000020799CPSF39999.414ENSG00000119203CPSF3100100.000Homo_sapiens
ENSSSCG00000020799CPSF39985.420ENSAPOG00000022087cpsf39885.420Acanthochromis_polyacanthus
ENSSSCG00000020799CPSF37396.994ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSSSCG00000020799CPSF39999.854ENSAMEG00000008493CPSF39999.854Ailuropoda_melanoleuca
ENSSSCG00000020799CPSF39984.160ENSACIG00000009846cpsf39884.160Amphilophus_citrinellus
ENSSSCG00000020799CPSF39987.879ENSACIG00000023663CPSF39887.879Amphilophus_citrinellus
ENSSSCG00000020799CPSF39988.235ENSAOCG00000010077CPSF39888.235Amphiprion_ocellaris
ENSSSCG00000020799CPSF39985.420ENSAOCG00000022056cpsf39491.156Amphiprion_ocellaris
ENSSSCG00000020799CPSF39985.567ENSAPEG00000019526cpsf39786.728Amphiprion_percula
ENSSSCG00000020799CPSF39988.235ENSAPEG00000021167CPSF39888.235Amphiprion_percula
ENSSSCG00000020799CPSF39983.676ENSATEG00000014525CPSF39883.676Anabas_testudineus
ENSSSCG00000020799CPSF39985.567ENSATEG00000003959cpsf39885.567Anabas_testudineus
ENSSSCG00000020799CPSF39895.529ENSAPLG00000006941CPSF39895.529Anas_platyrhynchos
ENSSSCG00000020799CPSF39991.228ENSACAG00000001759CPSF39992.598Anolis_carolinensis
ENSSSCG00000020799CPSF39992.679ENSANAG00000031254CPSF39993.103Aotus_nancymaae
ENSSSCG00000020799CPSF39984.370ENSACLG00000014484cpsf39985.865Astatotilapia_calliptera
ENSSSCG00000020799CPSF39987.700ENSACLG00000018846CPSF39887.700Astatotilapia_calliptera
ENSSSCG00000020799CPSF39988.382ENSAMXG00000004786cpsf39888.382Astyanax_mexicanus
ENSSSCG00000020799CPSF39999.707ENSBTAG00000019735CPSF39999.707Bos_taurus
ENSSSCG00000020799CPSF39159.213WBGene00013460cpsf-38959.213Caenorhabditis_elegans
ENSSSCG00000020799CPSF39999.268ENSCJAG00000006276CPSF39999.268Callithrix_jacchus
ENSSSCG00000020799CPSF39999.854ENSCAFG00000003375CPSF39599.854Canis_familiaris
ENSSSCG00000020799CPSF39099.838ENSCAFG00020026799CPSF310099.838Canis_lupus_dingo
ENSSSCG00000020799CPSF39999.707ENSCHIG00000013973CPSF39999.707Capra_hircus
ENSSSCG00000020799CPSF39999.268ENSTSYG00000002967CPSF39999.268Carlito_syrichta
ENSSSCG00000020799CPSF39996.645ENSCAPG00000013851CPSF39998.048Cavia_aperea
ENSSSCG00000020799CPSF39998.097ENSCPOG00000011299CPSF39998.097Cavia_porcellus
ENSSSCG00000020799CPSF39999.122ENSCCAG00000036730CPSF39999.122Cebus_capucinus
ENSSSCG00000020799CPSF39996.637ENSCATG00000014770CPSF39999.828Cercocebus_atys
ENSSSCG00000020799CPSF39997.950ENSCLAG00000002727CPSF39997.950Chinchilla_lanigera
ENSSSCG00000020799CPSF39991.508ENSCSAG00000007125CPSF39991.508Chlorocebus_sabaeus
ENSSSCG00000020799CPSF386100.000ENSCHOG00000000180CPSF38572.056Choloepus_hoffmanni
ENSSSCG00000020799CPSF39995.894ENSCPBG00000014074CPSF39995.894Chrysemys_picta_bellii
ENSSSCG00000020799CPSF39968.029ENSCING00000007214-9868.029Ciona_intestinalis
ENSSSCG00000020799CPSF39986.091ENSCANG00000034435CPSF39986.091Colobus_angolensis_palliatus
ENSSSCG00000020799CPSF39998.975ENSCGRG00001013134Cpsf39998.975Cricetulus_griseus_chok1gshd
ENSSSCG00000020799CPSF39998.975ENSCGRG00000018319Cpsf39998.975Cricetulus_griseus_crigri
ENSSSCG00000020799CPSF39986.931ENSCSEG00000002021CPSF39986.708Cynoglossus_semilaevis
ENSSSCG00000020799CPSF35072.013ENSCVAG00000022039-9472.013Cyprinodon_variegatus
ENSSSCG00000020799CPSF39988.529ENSCVAG00000015067CPSF39888.529Cyprinodon_variegatus
ENSSSCG00000020799CPSF39989.118ENSDARG00000027649cpsf39889.118Danio_rerio
ENSSSCG00000020799CPSF39997.807ENSDNOG00000008940CPSF39597.807Dasypus_novemcinctus
ENSSSCG00000020799CPSF39598.925ENSDORG00000014263Cpsf310098.925Dipodomys_ordii
ENSSSCG00000020799CPSF39967.599FBgn0261065Cpsf739867.599Drosophila_melanogaster
ENSSSCG00000020799CPSF39585.714ENSETEG00000003893CPSF310085.714Echinops_telfairi
ENSSSCG00000020799CPSF39978.797ENSEBUG00000009018cpsf39878.940Eptatretus_burgeri
ENSSSCG00000020799CPSF39999.854ENSEASG00005003970CPSF39999.854Equus_asinus_asinus
ENSSSCG00000020799CPSF39999.854ENSECAG00000019911CPSF39999.854Equus_caballus
ENSSSCG00000020799CPSF39983.895ENSEEUG00000015422CPSF39983.895Erinaceus_europaeus
ENSSSCG00000020799CPSF39988.235ENSELUG00000013775cpsf39888.235Esox_lucius
ENSSSCG00000020799CPSF39999.707ENSFCAG00000007852CPSF39999.707Felis_catus
ENSSSCG00000020799CPSF39994.249ENSFALG00000006572CPSF39995.666Ficedula_albicollis
ENSSSCG00000020799CPSF39997.507ENSFDAG00000006317CPSF39997.507Fukomys_damarensis
ENSSSCG00000020799CPSF39985.125ENSFHEG00000014774cpsf39885.125Fundulus_heteroclitus
ENSSSCG00000020799CPSF36469.024ENSFHEG00000012186CPSF39969.024Fundulus_heteroclitus
ENSSSCG00000020799CPSF39986.765ENSGMOG00000003157cpsf39886.765Gadus_morhua
ENSSSCG00000020799CPSF39995.147ENSGALG00000016424CPSF39994.795Gallus_gallus
ENSSSCG00000020799CPSF39983.917ENSGAFG00000019449cpsf39983.917Gambusia_affinis
ENSSSCG00000020799CPSF39988.513ENSGAFG00000008016CPSF39888.513Gambusia_affinis
ENSSSCG00000020799CPSF37494.004ENSGAGG00000025583CPSF39394.004Gopherus_agassizii
ENSSSCG00000020799CPSF39998.083ENSGGOG00000001757CPSF39999.369Gorilla_gorilla
ENSSSCG00000020799CPSF39985.756ENSHBUG00000001188cpsf39985.756Haplochromis_burtoni
ENSSSCG00000020799CPSF36481.728ENSHBUG00000014332CPSF39981.728Haplochromis_burtoni
ENSSSCG00000020799CPSF39997.361ENSHGLG00000000666CPSF39997.361Heterocephalus_glaber_female
ENSSSCG00000020799CPSF39997.361ENSHGLG00100007765CPSF39997.361Heterocephalus_glaber_male
ENSSSCG00000020799CPSF39986.471ENSHCOG00000015957CPSF39786.471Hippocampus_comes
ENSSSCG00000020799CPSF39985.044ENSHCOG00000007251cpsf39985.044Hippocampus_comes
ENSSSCG00000020799CPSF39987.206ENSIPUG00000023488cpsf39887.206Ictalurus_punctatus
ENSSSCG00000020799CPSF39999.268ENSSTOG00000004476CPSF39999.268Ictidomys_tridecemlineatus
ENSSSCG00000020799CPSF39998.097ENSJJAG00000023415Cpsf39998.097Jaculus_jaculus
ENSSSCG00000020799CPSF39984.831ENSKMAG00000002806cpsf39884.831Kryptolebias_marmoratus
ENSSSCG00000020799CPSF39987.794ENSKMAG00000007317CPSF39887.794Kryptolebias_marmoratus
ENSSSCG00000020799CPSF35980.161ENSLBEG00000015018-9980.161Labrus_bergylta
ENSSSCG00000020799CPSF39979.295ENSLBEG00000020569cpsf39479.295Labrus_bergylta
ENSSSCG00000020799CPSF39589.352ENSLBEG00000013492CPSF39889.352Labrus_bergylta
ENSSSCG00000020799CPSF39983.800ENSLACG00000008308CPSF39883.800Latimeria_chalumnae
ENSSSCG00000020799CPSF39989.280ENSLOCG00000016823cpsf39889.280Lepisosteus_oculatus
ENSSSCG00000020799CPSF39997.791ENSLAFG00000009467CPSF39997.791Loxodonta_africana
ENSSSCG00000020799CPSF39999.268ENSMFAG00000001339CPSF39999.268Macaca_fascicularis
ENSSSCG00000020799CPSF39997.923ENSMMUG00000018038CPSF39999.226Macaca_mulatta
ENSSSCG00000020799CPSF39986.530ENSMNEG00000039447CPSF39986.530Macaca_nemestrina
ENSSSCG00000020799CPSF39999.414ENSMLEG00000026825CPSF39999.414Mandrillus_leucophaeus
ENSSSCG00000020799CPSF39986.783ENSMAMG00000008835CPSF39886.783Mastacembelus_armatus
ENSSSCG00000020799CPSF39985.862ENSMAMG00000003076cpsf39885.862Mastacembelus_armatus
ENSSSCG00000020799CPSF39985.756ENSMZEG00005014358cpsf39985.756Maylandia_zebra
ENSSSCG00000020799CPSF39988.676ENSMZEG00005006258CPSF39888.676Maylandia_zebra
ENSSSCG00000020799CPSF39993.610ENSMGAG00000013995CPSF39995.195Meleagris_gallopavo
ENSSSCG00000020799CPSF36097.333ENSMAUG00000000166Cpsf39997.333Mesocricetus_auratus
ENSSSCG00000020799CPSF39994.143ENSMICG00000002363CPSF39994.143Microcebus_murinus
ENSSSCG00000020799CPSF39994.143ENSMOCG00000020067Cpsf39994.143Microtus_ochrogaster
ENSSSCG00000020799CPSF37879.779ENSMMOG00000011923CPSF38379.779Mola_mola
ENSSSCG00000020799CPSF39980.640ENSMMOG00000018212CPSF39882.481Mola_mola
ENSSSCG00000020799CPSF39996.232ENSMODG00000014703CPSF39996.232Monodelphis_domestica
ENSSSCG00000020799CPSF39986.050ENSMALG00000016416cpsf39986.050Monopterus_albus
ENSSSCG00000020799CPSF39784.502ENSMALG00000011474CPSF39983.438Monopterus_albus
ENSSSCG00000020799CPSF39998.682MGP_CAROLIEiJ_G0017640Cpsf39998.682Mus_caroli
ENSSSCG00000020799CPSF39998.682ENSMUSG00000054309Cpsf39998.682Mus_musculus
ENSSSCG00000020799CPSF39998.536MGP_PahariEiJ_G0029397Cpsf39998.536Mus_pahari
ENSSSCG00000020799CPSF39998.682MGP_SPRETEiJ_G0018481Cpsf39998.682Mus_spretus
ENSSSCG00000020799CPSF39999.413ENSMPUG00000013213CPSF39999.413Mustela_putorius_furo
ENSSSCG00000020799CPSF39998.538ENSMLUG00000010636CPSF39998.538Myotis_lucifugus
ENSSSCG00000020799CPSF39998.829ENSNGAG00000019836Cpsf39998.829Nannospalax_galili
ENSSSCG00000020799CPSF39987.700ENSNBRG00000010525CPSF39887.700Neolamprologus_brichardi
ENSSSCG00000020799CPSF39985.316ENSNBRG00000004770cpsf39985.316Neolamprologus_brichardi
ENSSSCG00000020799CPSF39999.268ENSNLEG00000013359CPSF39999.268Nomascus_leucogenys
ENSSSCG00000020799CPSF39965.447ENSMEUG00000013117-9965.447Notamacropus_eugenii
ENSSSCG00000020799CPSF39990.176ENSOPRG00000008902CPSF39990.176Ochotona_princeps
ENSSSCG00000020799CPSF39997.511ENSODEG00000003129CPSF39997.511Octodon_degus
ENSSSCG00000020799CPSF39985.903ENSONIG00000018812cpsf39985.903Oreochromis_niloticus
ENSSSCG00000020799CPSF38996.625ENSOANG00000008577CPSF39996.625Ornithorhynchus_anatinus
ENSSSCG00000020799CPSF39999.268ENSOCUG00000003728CPSF39999.268Oryctolagus_cuniculus
ENSSSCG00000020799CPSF39983.700ENSORLG00000018854cpsf39983.700Oryzias_latipes
ENSSSCG00000020799CPSF39983.554ENSORLG00020013331cpsf39983.554Oryzias_latipes_hni
ENSSSCG00000020799CPSF39983.700ENSORLG00015011017cpsf39983.700Oryzias_latipes_hsok
ENSSSCG00000020799CPSF39983.847ENSOMEG00000010647cpsf39483.847Oryzias_melastigma
ENSSSCG00000020799CPSF39989.312ENSOGAG00000001680CPSF39989.312Otolemur_garnettii
ENSSSCG00000020799CPSF39999.707ENSOARG00000015073CPSF39999.707Ovis_aries
ENSSSCG00000020799CPSF39999.414ENSPPAG00000042457CPSF39999.414Pan_paniscus
ENSSSCG00000020799CPSF39999.414ENSPPRG00000016790CPSF39999.414Panthera_pardus
ENSSSCG00000020799CPSF39999.411ENSPTIG00000003920CPSF39999.411Panthera_tigris_altaica
ENSSSCG00000020799CPSF39999.414ENSPTRG00000011638CPSF39999.414Pan_troglodytes
ENSSSCG00000020799CPSF39999.122ENSPANG00000016798CPSF39999.122Papio_anubis
ENSSSCG00000020799CPSF39989.706ENSPKIG00000023646cpsf39989.457Paramormyrops_kingsleyae
ENSSSCG00000020799CPSF39994.282ENSPSIG00000016144CPSF39994.282Pelodiscus_sinensis
ENSSSCG00000020799CPSF36479.506ENSPMGG00000015311CPSF39979.506Periophthalmus_magnuspinnatus
ENSSSCG00000020799CPSF39086.316ENSPMGG00000006141-9985.340Periophthalmus_magnuspinnatus
ENSSSCG00000020799CPSF39998.536ENSPEMG00000017668Cpsf39998.536Peromyscus_maniculatus_bairdii
ENSSSCG00000020799CPSF37890.317ENSPMAG00000004841cpsf39990.317Petromyzon_marinus
ENSSSCG00000020799CPSF39996.326ENSPCIG00000009823CPSF39897.853Phascolarctos_cinereus
ENSSSCG00000020799CPSF39984.897ENSPFOG00000015922cpsf39984.897Poecilia_formosa
ENSSSCG00000020799CPSF39988.218ENSPFOG00000010418-9888.218Poecilia_formosa
ENSSSCG00000020799CPSF36481.436ENSPLAG00000021300-9981.436Poecilia_latipinna
ENSSSCG00000020799CPSF39984.897ENSPLAG00000000882cpsf39984.897Poecilia_latipinna
ENSSSCG00000020799CPSF39985.044ENSPMEG00000018309cpsf39985.044Poecilia_mexicana
ENSSSCG00000020799CPSF39983.211ENSPREG00000004482CPSF39883.211Poecilia_reticulata
ENSSSCG00000020799CPSF39983.758ENSPREG00000014875cpsf39983.758Poecilia_reticulata
ENSSSCG00000020799CPSF39994.876ENSPPYG00000012666CPSF39994.876Pongo_abelii
ENSSSCG00000020799CPSF39564.055ENSPCAG00000015042CPSF310064.055Procavia_capensis
ENSSSCG00000020799CPSF38892.199ENSPCOG00000023016CPSF39892.199Propithecus_coquereli
ENSSSCG00000020799CPSF39999.413ENSPVAG00000005324CPSF39999.413Pteropus_vampyrus
ENSSSCG00000020799CPSF39985.756ENSPNYG00000004405cpsf39985.756Pundamilia_nyererei
ENSSSCG00000020799CPSF38692.950ENSPNYG00000021047CPSF39092.950Pundamilia_nyererei
ENSSSCG00000020799CPSF39987.647ENSPNAG00000023060cpsf39887.647Pygocentrus_nattereri
ENSSSCG00000020799CPSF39998.680ENSRNOG00000052418Cpsf39998.680Rattus_norvegicus
ENSSSCG00000020799CPSF39993.450ENSRBIG00000041615CPSF39994.737Rhinopithecus_bieti
ENSSSCG00000020799CPSF39999.414ENSRROG00000033792CPSF39999.414Rhinopithecus_roxellana
ENSSSCG00000020799CPSF38443.379YLR277CYSH18443.379Saccharomyces_cerevisiae
ENSSSCG00000020799CPSF39993.175ENSSBOG00000027263CPSF39993.033Saimiri_boliviensis_boliviensis
ENSSSCG00000020799CPSF39997.950ENSSHAG00000007024CPSF39997.950Sarcophilus_harrisii
ENSSSCG00000020799CPSF39989.721ENSSFOG00015002108cpsf39989.721Scleropages_formosus
ENSSSCG00000020799CPSF39587.963ENSSMAG00000020534CPSF39587.963Scophthalmus_maximus
ENSSSCG00000020799CPSF39988.382ENSSDUG00000018498CPSF39888.382Seriola_dumerili
ENSSSCG00000020799CPSF39985.903ENSSDUG00000002828cpsf39685.903Seriola_dumerili
ENSSSCG00000020799CPSF39988.382ENSSLDG00000005234CPSF39888.382Seriola_lalandi_dorsalis
ENSSSCG00000020799CPSF39985.903ENSSLDG00000008469cpsf39685.903Seriola_lalandi_dorsalis
ENSSSCG00000020799CPSF39981.552ENSSARG00000005186CPSF39981.552Sorex_araneus
ENSSSCG00000020799CPSF39991.270ENSSPUG00000015525CPSF39792.836Sphenodon_punctatus
ENSSSCG00000020799CPSF39985.567ENSSPAG00000018579cpsf39885.567Stegastes_partitus
ENSSSCG00000020799CPSF39988.088ENSSPAG00000002906CPSF39888.088Stegastes_partitus
ENSSSCG00000020799CPSF39995.735ENSTGUG00000013016CPSF39995.735Taeniopygia_guttata
ENSSSCG00000020799CPSF36472.727ENSTRUG00000013905CPSF39972.727Takifugu_rubripes
ENSSSCG00000020799CPSF39985.294ENSTRUG00000007030cpsf39785.294Takifugu_rubripes
ENSSSCG00000020799CPSF38593.699ENSTBEG00000002707CPSF38493.699Tupaia_belangeri
ENSSSCG00000020799CPSF38898.919ENSTTRG00000000861CPSF38898.919Tursiops_truncatus
ENSSSCG00000020799CPSF39996.774ENSUAMG00000007535CPSF39896.774Ursus_americanus
ENSSSCG00000020799CPSF39998.562ENSUMAG00000003676CPSF39999.845Ursus_maritimus
ENSSSCG00000020799CPSF39395.899ENSVPAG00000008041CPSF310095.899Vicugna_pacos
ENSSSCG00000020799CPSF39999.854ENSVVUG00000002194CPSF39999.854Vulpes_vulpes
ENSSSCG00000020799CPSF39990.162ENSXETG00000008263cpsf39890.162Xenopus_tropicalis
ENSSSCG00000020799CPSF39985.191ENSXCOG00000019695cpsf39985.191Xiphophorus_couchianus
ENSSSCG00000020799CPSF35980.054ENSXCOG00000000957-8780.054Xiphophorus_couchianus
ENSSSCG00000020799CPSF39988.365ENSXMAG00000027291CPSF39888.365Xiphophorus_maculatus
ENSSSCG00000020799CPSF39984.897ENSXMAG00000009784cpsf39984.897Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us