EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000021363 (Gene tree)
Gene ID: 100188906
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 67925 bases
Position: chr12:53097729-53165653
Accession: 100188906
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000035246	ResIII	PF04851.15	2.5e-08	1	1
ENSSSCP00000037269	ResIII	PF04851.15	2.8e-08	1	1
ENSSSCP00000040467	ResIII	PF04851.15	2.8e-08	1	1
ENSSSCP00000055609	ResIII	PF04851.15	2.8e-08	1	1
ENSSSCP00000045076	ResIII	PF04851.15	2.8e-08	1	1
ENSSSCP00000019030	ResIII	PF04851.15	2.9e-08	1	1
ENSSSCP00000031667	ResIII	PF04851.15	3.1e-08	1	1
ENSSSCP00000055885	ResIII	PF04851.15	4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000019548	CHD3-203	5859	-	ENSSSCP00000019030	1952 (aa)	-	F1ST12
ENSSSCT00000037530	CHD3-205	8399	-	ENSSSCP00000035246	1709 (aa)	-	A0A286ZUW6
ENSSSCT00000042642	CHD3-206	10131	-	ENSSSCP00000037269	1919 (aa)	-	A0A287A0J5
ENSSSCT00000019543	CHD3-202	4047	-	ENSSSCP00000019025	228 (aa)	-	F1ST05
ENSSSCT00000050125	CHD3-201	7101	-	ENSSSCP00000055609	1830 (aa)	-	A0A287BG95
ENSSSCT00000064898	CHD3-208	6895	XM_021067838	ENSSSCP00000055885	1912 (aa)	XP_020923497	A0A287BIB9
ENSSSCT00000049398	CHD3-207	9554	XM_021067835	ENSSSCP00000031667	1996 (aa)	XP_020923494	A0A286ZJL1
ENSSSCT00000041969	CHD3-204	7341	XM_021067841	ENSSSCP00000040467	1830 (aa)	XP_020923500	A0A287BG95
ENSSSCT00000052611	CHD3-209	6054	-	ENSSSCP00000045076	1815 (aa)	-	A0A287AM40

Gene Model

Click here to download ENSSSCG00000021363's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000021363's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000021363	CHD3	99	70.612	ENSSSCG00000000697	-	95	70.107
ENSSSCG00000021363	CHD3	99	70.498	ENSSSCG00000003366	CHD5	98	71.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000021363	CHD3	100	98.473	ENSG00000170004	CHD3	99	99.237	Homo_sapiens
ENSSSCG00000021363	CHD3	92	80.311	ENSAPOG00000005614	chd3	97	80.387	Acanthochromis_polyacanthus
ENSSSCG00000021363	CHD3	74	97.070	ENSAMEG00000003025	-	100	97.070	Ailuropoda_melanoleuca
ENSSSCG00000021363	CHD3	92	90.854	ENSACIG00000019671	chd3	99	91.358	Amphilophus_citrinellus
ENSSSCG00000021363	CHD3	92	81.120	ENSAOCG00000023784	chd3	97	81.910	Amphiprion_ocellaris
ENSSSCG00000021363	CHD3	92	77.727	ENSAPEG00000006341	chd3	96	75.369	Amphiprion_percula
ENSSSCG00000021363	CHD3	100	74.606	ENSATEG00000000848	chd3	95	81.250	Anabas_testudineus
ENSSSCG00000021363	CHD3	100	85.351	ENSACAG00000004276	CHD3	96	83.831	Anolis_carolinensis
ENSSSCG00000021363	CHD3	100	98.364	ENSANAG00000034323	CHD3	99	98.243	Aotus_nancymaae
ENSSSCG00000021363	CHD3	86	89.697	ENSACLG00000009222	chd3	99	73.622	Astatotilapia_calliptera
ENSSSCG00000021363	CHD3	100	98.525	ENSBTAG00000014377	CHD3	97	98.643	Bos_taurus
ENSSSCG00000021363	CHD3	100	98.310	ENSCJAG00000014766	CHD3	99	98.276	Callithrix_jacchus
ENSSSCG00000021363	CHD3	100	97.983	ENSCAFG00000016859	CHD3	99	98.022	Canis_familiaris
ENSSSCG00000021363	CHD3	100	97.983	ENSCAFG00020007422	CHD3	100	97.983	Canis_lupus_dingo
ENSSSCG00000021363	CHD3	100	98.419	ENSCHIG00000016737	CHD3	99	98.327	Capra_hircus
ENSSSCG00000021363	CHD3	100	98.364	ENSTSYG00000035658	CHD3	99	98.225	Carlito_syrichta
ENSSSCG00000021363	CHD3	100	95.147	ENSCAPG00000014864	CHD3	98	95.231	Cavia_aperea
ENSSSCG00000021363	CHD3	100	97.874	ENSCPOG00000022653	CHD3	98	97.768	Cavia_porcellus
ENSSSCG00000021363	CHD3	100	98.201	ENSCCAG00000034792	CHD3	99	98.174	Cebus_capucinus
ENSSSCG00000021363	CHD3	100	98.201	ENSCATG00000041717	CHD3	99	98.174	Cercocebus_atys
ENSSSCG00000021363	CHD3	100	97.928	ENSCLAG00000010523	CHD3	100	98.069	Chinchilla_lanigera
ENSSSCG00000021363	CHD3	100	98.415	ENSCSAG00000011122	CHD3	99	98.473	Chlorocebus_sabaeus
ENSSSCG00000021363	CHD3	99	86.565	ENSCPBG00000011966	CHD3	99	87.882	Chrysemys_picta_bellii
ENSSSCG00000021363	CHD3	100	98.146	ENSCANG00000037641	CHD3	99	98.124	Colobus_angolensis_palliatus
ENSSSCG00000021363	CHD3	100	97.003	ENSCGRG00001011306	Chd3	100	97.105	Cricetulus_griseus_chok1gshd
ENSSSCG00000021363	CHD3	93	98.529	ENSCGRG00000007878	Chd3	99	98.529	Cricetulus_griseus_crigri
ENSSSCG00000021363	CHD3	90	87.349	ENSCSEG00000004489	chd3	95	81.967	Cynoglossus_semilaevis
ENSSSCG00000021363	CHD3	95	77.267	ENSCVAG00000007293	chd3	95	81.855	Cyprinodon_variegatus
ENSSSCG00000021363	CHD3	99	77.562	ENSDARG00000021405	chd3	99	75.640	Danio_rerio
ENSSSCG00000021363	CHD3	100	83.118	ENSDNOG00000047846	CHD3	100	83.118	Dasypus_novemcinctus
ENSSSCG00000021363	CHD3	100	97.437	ENSDORG00000010713	Chd3	100	97.510	Dipodomys_ordii
ENSSSCG00000021363	CHD3	99	92.634	ENSETEG00000017733	CHD3	100	91.649	Echinops_telfairi
ENSSSCG00000021363	CHD3	82	69.815	ENSEBUG00000008310	chd3	99	70.430	Eptatretus_burgeri
ENSSSCG00000021363	CHD3	100	98.255	ENSEASG00005019360	CHD3	100	98.255	Equus_asinus_asinus
ENSSSCG00000021363	CHD3	100	98.310	ENSECAG00000010051	CHD3	100	98.310	Equus_caballus
ENSSSCG00000021363	CHD3	92	96.610	ENSEEUG00000015205	CHD3	92	98.077	Erinaceus_europaeus
ENSSSCG00000021363	CHD3	90	89.933	ENSELUG00000019499	chd3	99	90.541	Esox_lucius
ENSSSCG00000021363	CHD3	100	97.601	ENSFCAG00000009629	CHD3	96	97.715	Felis_catus
ENSSSCG00000021363	CHD3	100	97.655	ENSFDAG00000008220	CHD3	99	95.339	Fukomys_damarensis
ENSSSCG00000021363	CHD3	90	80.406	ENSGMOG00000013599	chd3	91	81.015	Gadus_morhua
ENSSSCG00000021363	CHD3	63	78.366	ENSGAFG00000004055	chd3	99	76.587	Gambusia_affinis
ENSSSCG00000021363	CHD3	99	71.868	ENSGACG00000019275	chd3	100	71.083	Gasterosteus_aculeatus
ENSSSCG00000021363	CHD3	86	86.499	ENSGAGG00000013164	CHD3	97	88.000	Gopherus_agassizii
ENSSSCG00000021363	CHD3	100	98.419	ENSGGOG00000013496	CHD3	99	98.377	Gorilla_gorilla
ENSSSCG00000021363	CHD3	100	97.655	ENSHGLG00000012017	CHD3	99	97.816	Heterocephalus_glaber_female
ENSSSCG00000021363	CHD3	84	96.230	ENSHGLG00100013902	CHD3	99	90.593	Heterocephalus_glaber_male
ENSSSCG00000021363	CHD3	99	74.560	ENSHCOG00000010170	chd3	96	73.633	Hippocampus_comes
ENSSSCG00000021363	CHD3	91	87.421	ENSIPUG00000003271	chd3	92	87.898	Ictalurus_punctatus
ENSSSCG00000021363	CHD3	100	98.092	ENSSTOG00000025907	CHD3	99	98.173	Ictidomys_tridecemlineatus
ENSSSCG00000021363	CHD3	100	96.728	ENSJJAG00000017633	Chd3	100	96.799	Jaculus_jaculus
ENSSSCG00000021363	CHD3	90	92.517	ENSKMAG00000019292	chd3	97	74.656	Kryptolebias_marmoratus
ENSSSCG00000021363	CHD3	92	77.949	ENSLBEG00000028485	chd3	92	80.556	Labrus_bergylta
ENSSSCG00000021363	CHD3	99	75.595	ENSLACG00000008031	CHD3	98	73.941	Latimeria_chalumnae
ENSSSCG00000021363	CHD3	100	78.208	ENSLOCG00000013965	chd3	98	76.886	Lepisosteus_oculatus
ENSSSCG00000021363	CHD3	99	93.861	ENSLAFG00000000572	CHD3	100	94.427	Loxodonta_africana
ENSSSCG00000021363	CHD3	100	98.146	ENSMFAG00000020113	CHD3	99	98.124	Macaca_fascicularis
ENSSSCG00000021363	CHD3	100	95.583	ENSMMUG00000022221	CHD3	99	95.593	Macaca_mulatta
ENSSSCG00000021363	CHD3	100	98.146	ENSMNEG00000001728	CHD3	99	98.124	Macaca_nemestrina
ENSSSCG00000021363	CHD3	100	98.201	ENSMLEG00000032249	CHD3	99	98.174	Mandrillus_leucophaeus
ENSSSCG00000021363	CHD3	99	75.044	ENSMAMG00000000564	chd3	93	90.798	Mastacembelus_armatus
ENSSSCG00000021363	CHD3	100	96.785	ENSMAUG00000013873	Chd3	99	94.098	Mesocricetus_auratus
ENSSSCG00000021363	CHD3	100	98.146	ENSMICG00000008741	CHD3	99	95.349	Microcebus_murinus
ENSSSCG00000021363	CHD3	100	97.003	ENSMOCG00000004848	Chd3	100	97.099	Microtus_ochrogaster
ENSSSCG00000021363	CHD3	99	75.015	ENSMMOG00000012699	chd3	99	73.484	Mola_mola
ENSSSCG00000021363	CHD3	100	92.955	ENSMODG00000007509	CHD3	100	92.955	Monodelphis_domestica
ENSSSCG00000021363	CHD3	100	96.734	MGP_CAROLIEiJ_G0016564	Chd3	100	95.471	Mus_caroli
ENSSSCG00000021363	CHD3	100	96.952	ENSMUSG00000018474	Chd3	99	96.622	Mus_musculus
ENSSSCG00000021363	CHD3	100	97.113	MGP_PahariEiJ_G0017695	Chd3	100	95.833	Mus_pahari
ENSSSCG00000021363	CHD3	100	97.006	MGP_SPRETEiJ_G0017400	Chd3	100	95.731	Mus_spretus
ENSSSCG00000021363	CHD3	93	97.900	ENSMPUG00000008861	CHD3	100	97.900	Mustela_putorius_furo
ENSSSCG00000021363	CHD3	100	97.710	ENSMLUG00000014643	-	99	97.059	Myotis_lucifugus
ENSSSCG00000021363	CHD3	100	97.328	ENSNGAG00000000773	Chd3	98	97.163	Nannospalax_galili
ENSSSCG00000021363	CHD3	99	75.660	ENSNBRG00000000636	chd3	97	76.762	Neolamprologus_brichardi
ENSSSCG00000021363	CHD3	99	95.570	ENSNLEG00000009770	CHD3	100	95.280	Nomascus_leucogenys
ENSSSCG00000021363	CHD3	87	90.959	ENSMEUG00000005852	CHD3	87	90.959	Notamacropus_eugenii
ENSSSCG00000021363	CHD3	100	96.129	ENSOPRG00000011069	CHD3	100	96.211	Ochotona_princeps
ENSSSCG00000021363	CHD3	100	97.328	ENSODEG00000017785	CHD3	99	97.412	Octodon_degus
ENSSSCG00000021363	CHD3	99	76.072	ENSONIG00000009292	chd3	100	75.026	Oreochromis_niloticus
ENSSSCG00000021363	CHD3	100	92.888	ENSOCUG00000029299	CHD3	100	93.137	Oryctolagus_cuniculus
ENSSSCG00000021363	CHD3	91	71.655	ENSORLG00000007107	chd3	93	72.229	Oryzias_latipes
ENSSSCG00000021363	CHD3	60	75.752	ENSORLG00020008387	chd3	95	73.871	Oryzias_latipes_hni
ENSSSCG00000021363	CHD3	87	77.970	ENSOMEG00000013691	chd3	99	78.985	Oryzias_melastigma
ENSSSCG00000021363	CHD3	100	97.601	ENSOGAG00000003216	CHD3	99	97.665	Otolemur_garnettii
ENSSSCG00000021363	CHD3	100	96.343	ENSOARG00000017855	CHD3	99	96.396	Ovis_aries
ENSSSCG00000021363	CHD3	100	95.921	ENSPPAG00000032886	CHD3	99	96.052	Pan_paniscus
ENSSSCG00000021363	CHD3	100	97.819	ENSPPRG00000000626	CHD3	99	97.769	Panthera_pardus
ENSSSCG00000021363	CHD3	100	98.528	ENSPTRG00000008714	CHD3	99	98.479	Pan_troglodytes
ENSSSCG00000021363	CHD3	100	98.201	ENSPANG00000023938	CHD3	99	98.174	Papio_anubis
ENSSSCG00000021363	CHD3	96	80.882	ENSPKIG00000006305	chd3	99	79.412	Paramormyrops_kingsleyae
ENSSSCG00000021363	CHD3	63	90.842	ENSPSIG00000010177	CHD3	98	91.026	Pelodiscus_sinensis
ENSSSCG00000021363	CHD3	100	96.948	ENSPEMG00000014262	Chd3	99	96.953	Peromyscus_maniculatus_bairdii
ENSSSCG00000021363	CHD3	100	92.920	ENSPCIG00000005442	CHD3	98	95.228	Phascolarctos_cinereus
ENSSSCG00000021363	CHD3	99	74.815	ENSPFOG00000012464	chd3	92	74.095	Poecilia_formosa
ENSSSCG00000021363	CHD3	92	81.152	ENSPLAG00000002887	chd3	96	83.065	Poecilia_latipinna
ENSSSCG00000021363	CHD3	56	81.839	ENSPMEG00000016725	chd3	94	73.414	Poecilia_mexicana
ENSSSCG00000021363	CHD3	92	81.317	ENSPREG00000011044	chd3	99	78.655	Poecilia_reticulata
ENSSSCG00000021363	CHD3	100	95.638	ENSPPYG00000007940	CHD3	98	95.495	Pongo_abelii
ENSSSCG00000021363	CHD3	96	97.357	ENSPCAG00000004350	CHD3	96	97.357	Procavia_capensis
ENSSSCG00000021363	CHD3	100	98.146	ENSPCOG00000020952	CHD3	99	98.024	Propithecus_coquereli
ENSSSCG00000021363	CHD3	86	98.472	ENSPVAG00000016344	CHD3	87	96.505	Pteropus_vampyrus
ENSSSCG00000021363	CHD3	96	80.618	ENSPNAG00000020393	chd3	99	80.926	Pygocentrus_nattereri
ENSSSCG00000021363	CHD3	100	96.570	ENSRNOG00000009722	Chd3	100	96.570	Rattus_norvegicus
ENSSSCG00000021363	CHD3	100	94.836	ENSRBIG00000033562	CHD3	99	95.043	Rhinopithecus_bieti
ENSSSCG00000021363	CHD3	100	96.510	ENSRROG00000029554	CHD3	100	96.237	Rhinopithecus_roxellana
ENSSSCG00000021363	CHD3	100	98.419	ENSSBOG00000020719	CHD3	99	98.377	Saimiri_boliviensis_boliviensis
ENSSSCG00000021363	CHD3	100	92.534	ENSSHAG00000014412	CHD3	100	92.810	Sarcophilus_harrisii
ENSSSCG00000021363	CHD3	95	80.230	ENSSFOG00015023123	chd3	98	74.341	Scleropages_formosus
ENSSSCG00000021363	CHD3	93	90.244	ENSSMAG00000006451	chd3	99	77.464	Scophthalmus_maximus
ENSSSCG00000021363	CHD3	58	75.624	ENSSDUG00000005792	chd3	95	73.853	Seriola_dumerili
ENSSSCG00000021363	CHD3	90	90.854	ENSSPAG00000013694	chd3	99	78.894	Stegastes_partitus
ENSSSCG00000021363	CHD3	81	78.202	ENSTRUG00000014990	chd3	93	74.237	Takifugu_rubripes
ENSSSCG00000021363	CHD3	100	74.197	ENSTNIG00000012998	chd3	99	72.355	Tetraodon_nigroviridis
ENSSSCG00000021363	CHD3	71	97.608	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSSSCG00000021363	CHD3	99	98.607	ENSTTRG00000010295	CHD3	97	98.607	Tursiops_truncatus
ENSSSCG00000021363	CHD3	99	96.899	ENSUAMG00000005475	CHD3	99	96.899	Ursus_americanus
ENSSSCG00000021363	CHD3	61	98.142	ENSVPAG00000010794	-	62	98.148	Vicugna_pacos
ENSSSCG00000021363	CHD3	100	97.983	ENSVVUG00000028011	CHD3	99	97.870	Vulpes_vulpes
ENSSSCG00000021363	CHD3	100	74.220	ENSXETG00000012991	chd3	92	74.053	Xenopus_tropicalis
ENSSSCG00000021363	CHD3	54	91.892	ENSXCOG00000000809	chd3	96	83.089	Xiphophorus_couchianus
ENSSSCG00000021363	CHD3	91	86.628	ENSXMAG00000016035	chd3	99	87.059	Xiphophorus_maculatus