EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000025323 (Gene tree)
Gene ID: 100512659
Gene Symbol: SF3B3
Alias: KIAA0017|RSE1|SAP130|SF3b130
Full Name: splicing factor 3b subunit 3
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 54130 bases
Position: chr6:13524716-13578845
Accession: 100512659
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000035709	CPSF_A	PF03178.15	4.4e-102	1	1
ENSSSCP00000046525	CPSF_A	PF03178.15	4.4e-102	1	1
ENSSSCP00000027087	CPSF_A	PF03178.15	6.2e-91	1	1
ENSSSCP00000042873	CPSF_A	PF03178.15	7.2e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000030710	SF3B3-202	4068	-	ENSSSCP00000027087	1087 (aa)	-	I3LSJ4
ENSSSCT00000062222	SF3B3-203	4236	XM_021093803	ENSSSCP00000046525	1217 (aa)	XP_020949462	A0A286ZVS0
ENSSSCT00000042511	SF3B3-201	4697	-	ENSSSCP00000042873	1010 (aa)	-	A0A287AG93
ENSSSCT00000042208	SF3B3-204	4456	XM_021093804	ENSSSCP00000035709	1217 (aa)	XP_020949463	A0A286ZVS0

Gene Model

Click here to download ENSSSCG00000025323's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000025323's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000025323	SF3B3	100	99.918	ENSG00000189091	SF3B3	100	100.000	Homo_sapiens
ENSSSCG00000025323	SF3B3	97	94.411	ENSAPOG00000006172	sf3b3	98	93.595	Acanthochromis_polyacanthus
ENSSSCG00000025323	SF3B3	100	99.754	ENSAMEG00000002187	SF3B3	100	99.754	Ailuropoda_melanoleuca
ENSSSCG00000025323	SF3B3	100	93.468	ENSACIG00000016487	sf3b3	100	93.468	Amphilophus_citrinellus
ENSSSCG00000025323	SF3B3	100	93.509	ENSAOCG00000007158	sf3b3	100	93.509	Amphiprion_ocellaris
ENSSSCG00000025323	SF3B3	100	93.509	ENSAPEG00000022786	sf3b3	100	93.509	Amphiprion_percula
ENSSSCG00000025323	SF3B3	100	93.591	ENSATEG00000013708	sf3b3	100	93.591	Anabas_testudineus
ENSSSCG00000025323	SF3B3	98	98.274	ENSAPLG00000004996	SF3B3	100	98.075	Anas_platyrhynchos
ENSSSCG00000025323	SF3B3	100	98.685	ENSACAG00000001817	SF3B3	100	98.685	Anolis_carolinensis
ENSSSCG00000025323	SF3B3	100	99.918	ENSANAG00000028001	SF3B3	100	99.918	Aotus_nancymaae
ENSSSCG00000025323	SF3B3	100	93.284	ENSACLG00000022555	sf3b3	100	93.284	Astatotilapia_calliptera
ENSSSCG00000025323	SF3B3	100	93.262	ENSAMXG00000003410	sf3b3	100	93.262	Astyanax_mexicanus
ENSSSCG00000025323	SF3B3	100	99.918	ENSBTAG00000010627	SF3B3	100	99.918	Bos_taurus
ENSSSCG00000025323	SF3B3	100	60.618	WBGene00019323	teg-4	100	60.618	Caenorhabditis_elegans
ENSSSCG00000025323	SF3B3	100	99.918	ENSCJAG00000014773	SF3B3	99	99.918	Callithrix_jacchus
ENSSSCG00000025323	SF3B3	100	100.000	ENSCAFG00000020151	SF3B3	100	100.000	Canis_familiaris
ENSSSCG00000025323	SF3B3	100	100.000	ENSCAFG00020020912	SF3B3	100	100.000	Canis_lupus_dingo
ENSSSCG00000025323	SF3B3	100	100.000	ENSCHIG00000019822	SF3B3	100	100.000	Capra_hircus
ENSSSCG00000025323	SF3B3	100	99.918	ENSTSYG00000007910	SF3B3	100	99.918	Carlito_syrichta
ENSSSCG00000025323	SF3B3	84	89.016	ENSCAPG00000001484	SF3B3	92	89.016	Cavia_aperea
ENSSSCG00000025323	SF3B3	100	98.603	ENSCPOG00000000586	SF3B3	100	98.603	Cavia_porcellus
ENSSSCG00000025323	SF3B3	100	99.918	ENSCCAG00000017736	SF3B3	100	99.918	Cebus_capucinus
ENSSSCG00000025323	SF3B3	100	99.918	ENSCATG00000036562	SF3B3	100	99.918	Cercocebus_atys
ENSSSCG00000025323	SF3B3	100	99.918	ENSCLAG00000003921	SF3B3	100	99.918	Chinchilla_lanigera
ENSSSCG00000025323	SF3B3	100	99.836	ENSCSAG00000004371	SF3B3	100	99.836	Chlorocebus_sabaeus
ENSSSCG00000025323	SF3B3	90	92.835	ENSCHOG00000001878	SF3B3	90	92.835	Choloepus_hoffmanni
ENSSSCG00000025323	SF3B3	100	98.932	ENSCPBG00000015853	SF3B3	100	98.932	Chrysemys_picta_bellii
ENSSSCG00000025323	SF3B3	100	80.870	ENSCING00000001342	-	100	80.870	Ciona_intestinalis
ENSSSCG00000025323	SF3B3	99	79.392	ENSCSAVG00000011454	-	100	79.392	Ciona_savignyi
ENSSSCG00000025323	SF3B3	97	99.797	ENSCANG00000042920	SF3B3	100	96.631	Colobus_angolensis_palliatus
ENSSSCG00000025323	SF3B3	100	99.836	ENSCGRG00001015908	Sf3b3	100	99.836	Cricetulus_griseus_chok1gshd
ENSSSCG00000025323	SF3B3	100	99.836	ENSCGRG00000010180	Sf3b3	100	99.836	Cricetulus_griseus_crigri
ENSSSCG00000025323	SF3B3	98	93.807	ENSCSEG00000014192	sf3b3	98	93.807	Cynoglossus_semilaevis
ENSSSCG00000025323	SF3B3	100	92.687	ENSCVAG00000010459	sf3b3	100	92.687	Cyprinodon_variegatus
ENSSSCG00000025323	SF3B3	100	93.509	ENSDARG00000103553	sf3b3	100	93.509	Danio_rerio
ENSSSCG00000025323	SF3B3	92	96.721	ENSDNOG00000043626	SF3B3	100	99.904	Dasypus_novemcinctus
ENSSSCG00000025323	SF3B3	100	99.918	ENSDORG00000014176	Sf3b3	100	99.918	Dipodomys_ordii
ENSSSCG00000025323	SF3B3	100	75.224	FBgn0035162	Sf3b3	100	75.224	Drosophila_melanogaster
ENSSSCG00000025323	SF3B3	84	100.000	ENSETEG00000002729	SF3B3	84	100.000	Echinops_telfairi
ENSSSCG00000025323	SF3B3	100	87.839	ENSEBUG00000006117	sf3b3	100	87.839	Eptatretus_burgeri
ENSSSCG00000025323	SF3B3	100	100.000	ENSEASG00005013376	SF3B3	100	100.000	Equus_asinus_asinus
ENSSSCG00000025323	SF3B3	100	100.000	ENSECAG00000014053	SF3B3	100	100.000	Equus_caballus
ENSSSCG00000025323	SF3B3	93	99.821	ENSEEUG00000015611	SF3B3	93	99.821	Erinaceus_europaeus
ENSSSCG00000025323	SF3B3	100	91.475	ENSELUG00000015417	sf3b3	100	91.475	Esox_lucius
ENSSSCG00000025323	SF3B3	100	100.000	ENSFCAG00000009487	SF3B3	100	100.000	Felis_catus
ENSSSCG00000025323	SF3B3	100	99.014	ENSFALG00000007372	SF3B3	100	99.014	Ficedula_albicollis
ENSSSCG00000025323	SF3B3	100	99.836	ENSFDAG00000002608	SF3B3	100	99.836	Fukomys_damarensis
ENSSSCG00000025323	SF3B3	100	93.098	ENSFHEG00000017824	sf3b3	100	93.098	Fundulus_heteroclitus
ENSSSCG00000025323	SF3B3	100	89.491	ENSGMOG00000008139	sf3b3	100	89.491	Gadus_morhua
ENSSSCG00000025323	SF3B3	100	99.096	ENSGALG00000002531	SF3B3	100	99.096	Gallus_gallus
ENSSSCG00000025323	SF3B3	100	92.687	ENSGAFG00000015206	sf3b3	100	92.687	Gambusia_affinis
ENSSSCG00000025323	SF3B3	100	93.103	ENSGACG00000002646	sf3b3	100	93.103	Gasterosteus_aculeatus
ENSSSCG00000025323	SF3B3	97	98.882	ENSGAGG00000006746	SF3B3	97	98.975	Gopherus_agassizii
ENSSSCG00000025323	SF3B3	100	99.918	ENSGGOG00000003246	SF3B3	100	99.918	Gorilla_gorilla
ENSSSCG00000025323	SF3B3	100	88.408	ENSHBUG00000005960	sf3b3	100	89.604	Haplochromis_burtoni
ENSSSCG00000025323	SF3B3	100	99.918	ENSHGLG00000010135	SF3B3	100	99.918	Heterocephalus_glaber_female
ENSSSCG00000025323	SF3B3	100	97.729	ENSHGLG00100011148	SF3B3	100	97.729	Heterocephalus_glaber_male
ENSSSCG00000025323	SF3B3	100	92.769	ENSHCOG00000011981	sf3b3	100	92.769	Hippocampus_comes
ENSSSCG00000025323	SF3B3	100	93.180	ENSIPUG00000020435	sf3b3	100	93.180	Ictalurus_punctatus
ENSSSCG00000025323	SF3B3	100	99.918	ENSSTOG00000007065	SF3B3	100	99.918	Ictidomys_tridecemlineatus
ENSSSCG00000025323	SF3B3	100	99.918	ENSJJAG00000003948	Sf3b3	100	99.918	Jaculus_jaculus
ENSSSCG00000025323	SF3B3	97	94.106	ENSKMAG00000004066	sf3b3	99	93.083	Kryptolebias_marmoratus
ENSSSCG00000025323	SF3B3	100	93.016	ENSLBEG00000018302	sf3b3	100	93.016	Labrus_bergylta
ENSSSCG00000025323	SF3B3	98	92.359	ENSLACG00000012501	SF3B3	99	92.359	Latimeria_chalumnae
ENSSSCG00000025323	SF3B3	100	94.171	ENSLOCG00000007566	sf3b3	100	94.171	Lepisosteus_oculatus
ENSSSCG00000025323	SF3B3	100	100.000	ENSLAFG00000012219	SF3B3	100	100.000	Loxodonta_africana
ENSSSCG00000025323	SF3B3	100	99.918	ENSMFAG00000045487	SF3B3	100	99.918	Macaca_fascicularis
ENSSSCG00000025323	SF3B3	100	99.918	ENSMMUG00000017812	SF3B3	100	99.918	Macaca_mulatta
ENSSSCG00000025323	SF3B3	100	99.918	ENSMNEG00000033385	SF3B3	100	99.918	Macaca_nemestrina
ENSSSCG00000025323	SF3B3	100	96.385	ENSMLEG00000043891	SF3B3	97	99.682	Mandrillus_leucophaeus
ENSSSCG00000025323	SF3B3	100	93.591	ENSMAMG00000016837	sf3b3	100	93.591	Mastacembelus_armatus
ENSSSCG00000025323	SF3B3	100	93.284	ENSMZEG00005010836	sf3b3	100	93.284	Maylandia_zebra
ENSSSCG00000025323	SF3B3	96	93.130	ENSMZEG00005026015	sf3b3	99	93.130	Maylandia_zebra
ENSSSCG00000025323	SF3B3	100	99.096	ENSMGAG00000001597	SF3B3	100	99.096	Meleagris_gallopavo
ENSSSCG00000025323	SF3B3	81	87.500	ENSMAUG00000013618	Sf3b3	95	83.069	Mesocricetus_auratus
ENSSSCG00000025323	SF3B3	100	98.769	ENSMICG00000001363	SF3B3	100	98.769	Microcebus_murinus
ENSSSCG00000025323	SF3B3	100	99.836	ENSMOCG00000006108	Sf3b3	100	99.836	Microtus_ochrogaster
ENSSSCG00000025323	SF3B3	96	93.511	ENSMMOG00000002598	sf3b3	97	93.511	Mola_mola
ENSSSCG00000025323	SF3B3	100	95.402	ENSMODG00000014363	SF3B3	100	95.402	Monodelphis_domestica
ENSSSCG00000025323	SF3B3	100	93.262	ENSMALG00000008014	sf3b3	100	93.262	Monopterus_albus
ENSSSCG00000025323	SF3B3	100	99.753	MGP_CAROLIEiJ_G0031563	Sf3b3	100	99.753	Mus_caroli
ENSSSCG00000025323	SF3B3	100	99.836	ENSMUSG00000033732	Sf3b3	100	99.836	Mus_musculus
ENSSSCG00000025323	SF3B3	100	99.753	MGP_SPRETEiJ_G0032681	Sf3b3	100	99.753	Mus_spretus
ENSSSCG00000025323	SF3B3	100	100.000	ENSMPUG00000010277	SF3B3	100	100.000	Mustela_putorius_furo
ENSSSCG00000025323	SF3B3	100	99.753	ENSMLUG00000014607	SF3B3	100	99.753	Myotis_lucifugus
ENSSSCG00000025323	SF3B3	100	99.918	ENSNGAG00000021903	Sf3b3	100	99.918	Nannospalax_galili
ENSSSCG00000025323	SF3B3	90	97.222	ENSNBRG00000007197	sf3b3	99	97.222	Neolamprologus_brichardi
ENSSSCG00000025323	SF3B3	100	98.440	ENSNLEG00000016127	SF3B3	99	99.682	Nomascus_leucogenys
ENSSSCG00000025323	SF3B3	92	99.208	ENSMEUG00000004479	SF3B3	94	99.208	Notamacropus_eugenii
ENSSSCG00000025323	SF3B3	98	96.647	ENSOPRG00000009847	SF3B3	100	96.647	Ochotona_princeps
ENSSSCG00000025323	SF3B3	100	99.836	ENSODEG00000014154	SF3B3	100	99.836	Octodon_degus
ENSSSCG00000025323	SF3B3	100	93.426	ENSONIG00000011198	sf3b3	100	93.426	Oreochromis_niloticus
ENSSSCG00000025323	SF3B3	100	99.753	ENSOANG00000001161	-	100	99.753	Ornithorhynchus_anatinus
ENSSSCG00000025323	SF3B3	100	97.535	ENSOCUG00000004139	SF3B3	100	97.535	Oryctolagus_cuniculus
ENSSSCG00000025323	SF3B3	100	93.376	ENSORLG00000013472	sf3b3	100	93.376	Oryzias_latipes
ENSSSCG00000025323	SF3B3	100	93.376	ENSORLG00020017473	sf3b3	100	93.376	Oryzias_latipes_hni
ENSSSCG00000025323	SF3B3	100	93.376	ENSORLG00015007710	sf3b3	100	93.376	Oryzias_latipes_hsok
ENSSSCG00000025323	SF3B3	100	92.933	ENSOMEG00000014483	sf3b3	100	92.933	Oryzias_melastigma
ENSSSCG00000025323	SF3B3	100	99.508	ENSOGAG00000016051	SF3B3	100	99.508	Otolemur_garnettii
ENSSSCG00000025323	SF3B3	100	99.754	ENSOARG00000004816	SF3B3	100	99.754	Ovis_aries
ENSSSCG00000025323	SF3B3	100	99.918	ENSPPAG00000026807	SF3B3	100	99.918	Pan_paniscus
ENSSSCG00000025323	SF3B3	100	100.000	ENSPPRG00000001686	SF3B3	100	100.000	Panthera_pardus
ENSSSCG00000025323	SF3B3	97	100.000	ENSPTIG00000020382	SF3B3	100	100.000	Panthera_tigris_altaica
ENSSSCG00000025323	SF3B3	100	99.918	ENSPTRG00000008308	SF3B3	100	99.918	Pan_troglodytes
ENSSSCG00000025323	SF3B3	100	99.918	ENSPANG00000024075	SF3B3	100	99.918	Papio_anubis
ENSSSCG00000025323	SF3B3	100	92.687	ENSPKIG00000002712	sf3b3	100	92.687	Paramormyrops_kingsleyae
ENSSSCG00000025323	SF3B3	97	96.044	ENSPSIG00000002232	SF3B3	100	99.080	Pelodiscus_sinensis
ENSSSCG00000025323	SF3B3	100	99.836	ENSPEMG00000008603	Sf3b3	100	99.836	Peromyscus_maniculatus_bairdii
ENSSSCG00000025323	SF3B3	100	91.947	ENSPMAG00000001793	sf3b3	100	91.947	Petromyzon_marinus
ENSSSCG00000025323	SF3B3	100	99.753	ENSPCIG00000014927	SF3B3	100	99.753	Phascolarctos_cinereus
ENSSSCG00000025323	SF3B3	100	92.769	ENSPFOG00000015516	sf3b3	100	92.769	Poecilia_formosa
ENSSSCG00000025323	SF3B3	100	92.769	ENSPLAG00000014330	sf3b3	100	92.769	Poecilia_latipinna
ENSSSCG00000025323	SF3B3	100	92.851	ENSPMEG00000019856	sf3b3	100	92.851	Poecilia_mexicana
ENSSSCG00000025323	SF3B3	98	93.611	ENSPREG00000019669	sf3b3	97	93.699	Poecilia_reticulata
ENSSSCG00000025323	SF3B3	95	99.805	ENSPPYG00000007539	SF3B3	100	99.805	Pongo_abelii
ENSSSCG00000025323	SF3B3	100	78.307	ENSPCAG00000002623	SF3B3	100	78.307	Procavia_capensis
ENSSSCG00000025323	SF3B3	84	100.000	ENSPCOG00000026582	SF3B3	100	100.000	Propithecus_coquereli
ENSSSCG00000025323	SF3B3	100	99.918	ENSPVAG00000000684	SF3B3	100	99.918	Pteropus_vampyrus
ENSSSCG00000025323	SF3B3	100	93.376	ENSPNYG00000003528	sf3b3	100	93.376	Pundamilia_nyererei
ENSSSCG00000025323	SF3B3	100	93.426	ENSPNAG00000015419	sf3b3	100	93.426	Pygocentrus_nattereri
ENSSSCG00000025323	SF3B3	100	99.836	ENSRNOG00000017724	Sf3b3	100	99.836	Rattus_norvegicus
ENSSSCG00000025323	SF3B3	100	99.918	ENSRBIG00000021904	SF3B3	100	99.918	Rhinopithecus_bieti
ENSSSCG00000025323	SF3B3	100	99.918	ENSRROG00000045703	SF3B3	100	99.918	Rhinopithecus_roxellana
ENSSSCG00000025323	SF3B3	92	41.935	YML049C	-	75	41.935	Saccharomyces_cerevisiae
ENSSSCG00000025323	SF3B3	100	99.918	ENSSBOG00000029156	SF3B3	100	99.918	Saimiri_boliviensis_boliviensis
ENSSSCG00000025323	SF3B3	100	99.753	ENSSHAG00000000372	SF3B3	100	99.753	Sarcophilus_harrisii
ENSSSCG00000025323	SF3B3	100	93.837	ENSSFOG00015012877	sf3b3	100	93.837	Scleropages_formosus
ENSSSCG00000025323	SF3B3	100	92.933	ENSSMAG00000014386	sf3b3	100	92.933	Scophthalmus_maximus
ENSSSCG00000025323	SF3B3	100	93.673	ENSSDUG00000021201	sf3b3	100	93.673	Seriola_dumerili
ENSSSCG00000025323	SF3B3	100	93.591	ENSSLDG00000017532	sf3b3	100	93.591	Seriola_lalandi_dorsalis
ENSSSCG00000025323	SF3B3	97	99.797	ENSSARG00000006917	SF3B3	93	100.000	Sorex_araneus
ENSSSCG00000025323	SF3B3	100	99.014	ENSSPUG00000006253	SF3B3	100	99.014	Sphenodon_punctatus
ENSSSCG00000025323	SF3B3	100	85.785	ENSSPAG00000003125	sf3b3	100	85.785	Stegastes_partitus
ENSSSCG00000025323	SF3B3	100	99.179	ENSTGUG00000006082	SF3B3	100	99.179	Taeniopygia_guttata
ENSSSCG00000025323	SF3B3	55	82.587	ENSTRUG00000015623	sf3b3	90	82.587	Takifugu_rubripes
ENSSSCG00000025323	SF3B3	97	94.309	ENSTNIG00000004857	sf3b3	100	93.199	Tetraodon_nigroviridis
ENSSSCG00000025323	SF3B3	97	82.317	ENSTBEG00000002946	SF3B3	100	84.683	Tupaia_belangeri
ENSSSCG00000025323	SF3B3	100	99.178	ENSTTRG00000005855	SF3B3	100	99.178	Tursiops_truncatus
ENSSSCG00000025323	SF3B3	100	100.000	ENSUAMG00000006780	SF3B3	100	100.000	Ursus_americanus
ENSSSCG00000025323	SF3B3	100	100.000	ENSUMAG00000017757	SF3B3	100	100.000	Ursus_maritimus
ENSSSCG00000025323	SF3B3	100	83.813	ENSVPAG00000003202	SF3B3	100	83.813	Vicugna_pacos
ENSSSCG00000025323	SF3B3	100	99.918	ENSVVUG00000017922	SF3B3	100	99.918	Vulpes_vulpes
ENSSSCG00000025323	SF3B3	100	96.795	ENSXETG00000032869	SF3B3	100	96.795	Xenopus_tropicalis
ENSSSCG00000025323	SF3B3	93	94.268	ENSXCOG00000013628	sf3b3	97	94.268	Xiphophorus_couchianus
ENSSSCG00000025323	SF3B3	100	92.769	ENSXMAG00000006334	sf3b3	99	93.909	Xiphophorus_maculatus