EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000026052 (Gene tree)
Gene ID
100626826
Gene Symbol
LSM14B
Alias
C20orf40|FAM61B|FLJ25473|FT005|LSM13|RAP55B|bA11M20.3
Full Name
LSM family member 14B
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Plus strand
Length
12264 bases
Position
chr17:61552551-61564814
Accession
100626826
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000020893FDFPF09532.101.3e-2511
ENSSSCP00000053189FDFPF09532.101.5e-2511
ENSSSCP00000034933FDFPF09532.102.6e-2511
ENSSSCP00000033806FDFPF09532.102.7e-2511
ENSSSCP00000057447FDFPF09532.102.8e-2511
ENSSSCP00000034933SM-ATXPF14438.61.5e-0711
ENSSSCP00000057447SM-ATXPF14438.61.9e-0711
ENSSSCP00000053189SM-ATXPF14438.61.9e-0711
ENSSSCP00000034933LSM14PF12701.78.4e-3111
ENSSSCP00000057447LSM14PF12701.79.1e-3111
ENSSSCP00000053189LSM14PF12701.71e-3011
ENSSSCP00000033806LSM14PF12701.78.2e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000038192LSM14B-2032515XM_021078208ENSSSCP00000057447463 (aa)XP_020933867A0A287BMP1
ENSSSCT00000042965LSM14B-2023193XM_021078207ENSSSCP00000053189502 (aa)XP_020933866A0A287BAU6
ENSSSCT00000062294LSM14B-2041365-ENSSSCP00000034933446 (aa)-A0A286ZTF5
ENSSSCT00000058755LSM14B-2011606-ENSSSCP00000033806453 (aa)-A0A286ZQC4
ENSSSCT00000028398LSM14B-2051379-ENSSSCP00000020893305 (aa)-I3LA27
Gene Model
Click here to download ENSSSCG00000026052's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000026052's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000026052LSM14B7653.506ENSSSCG00000002869LSM14A8454.645
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000026052LSM14B10078.689ENSG00000149657LSM14B10092.468Homo_sapiens
ENSSSCG00000026052LSM14B7556.044ENSAPOG00000001780lsm14b9256.098Acanthochromis_polyacanthus
ENSSSCG00000026052LSM14B10090.820ENSAMEG00000013430LSM14B10091.726Ailuropoda_melanoleuca
ENSSSCG00000026052LSM14B7552.841ENSACIG00000012266lsm14b9150.681Amphilophus_citrinellus
ENSSSCG00000026052LSM14B7556.546ENSAOCG00000012380lsm14b9256.593Amphiprion_ocellaris
ENSSSCG00000026052LSM14B10037.539ENSAOCG00000006667LSM14B9049.020Amphiprion_ocellaris
ENSSSCG00000026052LSM14B7553.107ENSAPEG00000023633lsm14b9250.815Amphiprion_percula
ENSSSCG00000026052LSM14B9738.788ENSATEG00000015895LSM14B8343.066Anabas_testudineus
ENSSSCG00000026052LSM14B7552.793ENSATEG00000016603lsm14b9252.893Anabas_testudineus
ENSSSCG00000026052LSM14B10080.456ENSAPLG00000013203LSM14B10082.653Anas_platyrhynchos
ENSSSCG00000026052LSM14B10064.610ENSACAG00000016195LSM14B9980.519Anolis_carolinensis
ENSSSCG00000026052LSM14B10088.525ENSANAG00000037915LSM14B10091.038Aotus_nancymaae
ENSSSCG00000026052LSM14B5446.988ENSACLG00000011955-5238.418Astatotilapia_calliptera
ENSSSCG00000026052LSM14B5449.398ENSACLG00000019624-5340.678Astatotilapia_calliptera
ENSSSCG00000026052LSM14B8838.129ENSACLG00000019663lsm14b9154.875Astatotilapia_calliptera
ENSSSCG00000026052LSM14B8238.800ENSACLG00000013004-7034.615Astatotilapia_calliptera
ENSSSCG00000026052LSM14B7560.440ENSAMXG00000002865lsm14b9960.100Astyanax_mexicanus
ENSSSCG00000026052LSM14B10089.508ENSBTAG00000021558LSM14B10092.217Bos_taurus
ENSSSCG00000026052LSM14B10089.836ENSCJAG00000014434LSM14B10091.981Callithrix_jacchus
ENSSSCG00000026052LSM14B10089.508ENSCAFG00000012518LSM14B9891.361Canis_familiaris
ENSSSCG00000026052LSM14B10089.508ENSCAFG00020022150LSM14B10092.217Canis_lupus_dingo
ENSSSCG00000026052LSM14B9466.551ENSCHIG00000022681-10068.947Capra_hircus
ENSSSCG00000026052LSM14B10091.148ENSCHIG00000010284-10093.396Capra_hircus
ENSSSCG00000026052LSM14B10077.377ENSTSYG00000031914LSM14B8990.351Carlito_syrichta
ENSSSCG00000026052LSM14B10090.492ENSCAPG00000013059LSM14B10091.254Cavia_aperea
ENSSSCG00000026052LSM14B10090.820ENSCPOG00000038080LSM14B10091.520Cavia_porcellus
ENSSSCG00000026052LSM14B10077.049ENSCCAG00000021267LSM14B10091.169Cebus_capucinus
ENSSSCG00000026052LSM14B9976.547ENSCCAG00000024900-9976.299Cebus_capucinus
ENSSSCG00000026052LSM14B10091.148ENSCATG00000036006LSM14B10092.925Cercocebus_atys
ENSSSCG00000026052LSM14B10089.180ENSCLAG00000003186LSM14B10090.058Chinchilla_lanigera
ENSSSCG00000026052LSM14B10090.820ENSCSAG00000015729LSM14B10092.689Chlorocebus_sabaeus
ENSSSCG00000026052LSM14B9964.901ENSCHOG00000006997-10070.221Choloepus_hoffmanni
ENSSSCG00000026052LSM14B10080.719ENSCPBG00000027065LSM14B9984.834Chrysemys_picta_bellii
ENSSSCG00000026052LSM14B10078.033ENSCANG00000036986LSM14B10090.936Colobus_angolensis_palliatus
ENSSSCG00000026052LSM14B10089.508ENSCGRG00001018399Lsm14b10091.429Cricetulus_griseus_chok1gshd
ENSSSCG00000026052LSM14B8079.835ENSCGRG00000002484-10078.189Cricetulus_griseus_crigri
ENSSSCG00000026052LSM14B9889.262ENSCGRG00000006111-10089.262Cricetulus_griseus_crigri
ENSSSCG00000026052LSM14B9637.217ENSCSEG00000020669LSM14B9247.425Cynoglossus_semilaevis
ENSSSCG00000026052LSM14B7552.500ENSCSEG00000004722lsm14b9351.733Cynoglossus_semilaevis
ENSSSCG00000026052LSM14B9531.973ENSCVAG00000012433-8835.714Cyprinodon_variegatus
ENSSSCG00000026052LSM14B10041.270ENSDARG00000025386lsm14b9956.423Danio_rerio
ENSSSCG00000026052LSM14B10087.213ENSDNOG00000025246LSM14B10087.213Dasypus_novemcinctus
ENSSSCG00000026052LSM14B10087.213ENSDORG00000016683Lsm14b10087.213Dipodomys_ordii
ENSSSCG00000026052LSM14B9961.716ENSETEG00000001869-10073.506Echinops_telfairi
ENSSSCG00000026052LSM14B8168.952ENSETEG00000011188-9682.805Echinops_telfairi
ENSSSCG00000026052LSM14B10090.492ENSEASG00005023218LSM14B10090.492Equus_asinus_asinus
ENSSSCG00000026052LSM14B10090.820ENSECAG00000010659LSM14B10093.247Equus_caballus
ENSSSCG00000026052LSM14B5196.970ENSEEUG00000007331LSM14B8096.970Erinaceus_europaeus
ENSSSCG00000026052LSM14B10042.857ENSELUG00000016299LSM14B9953.553Esox_lucius
ENSSSCG00000026052LSM14B9644.482ENSELUG00000005780lsm14b9260.615Esox_lucius
ENSSSCG00000026052LSM14B10077.705ENSFCAG00000003248LSM14B10092.208Felis_catus
ENSSSCG00000026052LSM14B10081.169ENSFALG00000010618LSM14B10083.979Ficedula_albicollis
ENSSSCG00000026052LSM14B10088.852ENSFDAG00000002214LSM14B10089.766Fukomys_damarensis
ENSSSCG00000026052LSM14B10036.593ENSFHEG00000006237lsm14b9250.273Fundulus_heteroclitus
ENSSSCG00000026052LSM14B6145.545ENSFHEG00000003362LSM14B7646.026Fundulus_heteroclitus
ENSSSCG00000026052LSM14B10037.908ENSGMOG00000017115lsm14b9151.268Gadus_morhua
ENSSSCG00000026052LSM14B10078.457ENSGALG00000005125LSM14B9984.778Gallus_gallus
ENSSSCG00000026052LSM14B9635.714ENSGAFG00000013723LSM14B8739.171Gambusia_affinis
ENSSSCG00000026052LSM14B5869.231ENSGAFG00000020318lsm14b7469.231Gambusia_affinis
ENSSSCG00000026052LSM14B9039.860ENSGACG00000009973lsm14b9254.270Gasterosteus_aculeatus
ENSSSCG00000026052LSM14B9369.718ENSGAGG00000004106LSM14B9479.098Gopherus_agassizii
ENSSSCG00000026052LSM14B10090.820ENSGGOG00000005630LSM14B10090.820Gorilla_gorilla
ENSSSCG00000026052LSM14B10090.164ENSHGLG00000015055LSM14B10091.948Heterocephalus_glaber_female
ENSSSCG00000026052LSM14B9990.066ENSHGLG00100015273LSM14B10090.066Heterocephalus_glaber_male
ENSSSCG00000026052LSM14B8836.431ENSHCOG00000004867lsm14b8642.553Hippocampus_comes
ENSSSCG00000026052LSM14B9538.870ENSHCOG00000018747LSM14B9250.843Hippocampus_comes
ENSSSCG00000026052LSM14B7858.808ENSIPUG00000014946lsm14b8759.504Ictalurus_punctatus
ENSSSCG00000026052LSM14B10090.164ENSSTOG00000020482LSM14B10090.936Ictidomys_tridecemlineatus
ENSSSCG00000026052LSM14B10088.852ENSJJAG00000012728Lsm14b9990.789Jaculus_jaculus
ENSSSCG00000026052LSM14B6542.453ENSKMAG00000012834-8842.654Kryptolebias_marmoratus
ENSSSCG00000026052LSM14B7552.793ENSKMAG00000017524lsm14b9353.005Kryptolebias_marmoratus
ENSSSCG00000026052LSM14B5642.169ENSLBEG00000007951LSM14B8641.475Labrus_bergylta
ENSSSCG00000026052LSM14B10066.990ENSLACG00000003849LSM14B9971.294Latimeria_chalumnae
ENSSSCG00000026052LSM14B10048.089ENSLOCG00000003746lsm14b9962.690Lepisosteus_oculatus
ENSSSCG00000026052LSM14B10073.770ENSLAFG00000007492LSM14B10086.416Loxodonta_africana
ENSSSCG00000026052LSM14B10091.148ENSMFAG00000041479LSM14B10092.925Macaca_fascicularis
ENSSSCG00000026052LSM14B10079.016ENSMMUG00000014084LSM14B10092.727Macaca_mulatta
ENSSSCG00000026052LSM14B10079.016ENSMNEG00000045573LSM14B10092.727Macaca_nemestrina
ENSSSCG00000026052LSM14B10079.016ENSMLEG00000040895LSM14B10091.813Mandrillus_leucophaeus
ENSSSCG00000026052LSM14B7552.078ENSMAMG00000020539lsm14b9253.279Mastacembelus_armatus
ENSSSCG00000026052LSM14B10037.179ENSMAMG00000024124LSM14B9148.883Mastacembelus_armatus
ENSSSCG00000026052LSM14B8838.489ENSMZEG00005000987lsm14b9154.039Maylandia_zebra
ENSSSCG00000026052LSM14B6962.879ENSMZEG00005026001LSM14B9449.315Maylandia_zebra
ENSSSCG00000026052LSM14B10065.161ENSMGAG00000005300LSM14B10080.056Meleagris_gallopavo
ENSSSCG00000026052LSM14B10088.525ENSMAUG00000020700Lsm14b10090.130Mesocricetus_auratus
ENSSSCG00000026052LSM14B10090.820ENSMICG00000014675LSM14B10092.727Microcebus_murinus
ENSSSCG00000026052LSM14B9073.818ENSMOCG00000005119-9373.626Microtus_ochrogaster
ENSSSCG00000026052LSM14B10088.197ENSMOCG00000020600Lsm14b10090.390Microtus_ochrogaster
ENSSSCG00000026052LSM14B7553.521ENSMMOG00000020042lsm14b9553.611Mola_mola
ENSSSCG00000026052LSM14B9038.849ENSMMOG00000017321LSM14B9151.124Mola_mola
ENSSSCG00000026052LSM14B10084.590ENSMODG00000016690LSM14B10084.590Monodelphis_domestica
ENSSSCG00000026052LSM14B9439.510ENSMALG00000004783lsm14b9253.561Monopterus_albus
ENSSSCG00000026052LSM14B9036.082ENSMALG00000022251LSM14B9248.774Monopterus_albus
ENSSSCG00000026052LSM14B10088.197MGP_CAROLIEiJ_G0024770Lsm14b10090.802Mus_caroli
ENSSSCG00000026052LSM14B10088.525ENSMUSG00000039108Lsm14b10090.909Mus_musculus
ENSSSCG00000026052LSM14B10087.869MGP_PahariEiJ_G0026214Lsm14b10090.566Mus_pahari
ENSSSCG00000026052LSM14B10088.525MGP_SPRETEiJ_G0025693Lsm14b10091.038Mus_spretus
ENSSSCG00000026052LSM14B10089.508ENSMPUG00000007584LSM14B10087.097Mustela_putorius_furo
ENSSSCG00000026052LSM14B10078.105ENSMLUG00000000304LSM14B10091.451Myotis_lucifugus
ENSSSCG00000026052LSM14B7585.714ENSNGAG00000016550Lsm14b10085.714Nannospalax_galili
ENSSSCG00000026052LSM14B10078.689ENSNLEG00000015757LSM14B10091.520Nomascus_leucogenys
ENSSSCG00000026052LSM14B6994.771ENSMEUG00000008267-7797.260Notamacropus_eugenii
ENSSSCG00000026052LSM14B5074.222ENSMEUG00000006305-9972.444Notamacropus_eugenii
ENSSSCG00000026052LSM14B5072.549ENSOPRG00000000447-5997.500Ochotona_princeps
ENSSSCG00000026052LSM14B10090.820ENSODEG00000004099LSM14B10092.468Octodon_degus
ENSSSCG00000026052LSM14B8842.446ENSONIG00000020318lsm14b9156.267Oreochromis_niloticus
ENSSSCG00000026052LSM14B6081.655ENSOANG00000003370LSM14B9980.984Ornithorhynchus_anatinus
ENSSSCG00000026052LSM14B10076.066ENSOCUG00000006279LSM14B10088.663Oryctolagus_cuniculus
ENSSSCG00000026052LSM14B9133.788ENSORLG00000028353LSM14B9144.904Oryzias_latipes
ENSSSCG00000026052LSM14B7450.425ENSORLG00000013525lsm14b9252.893Oryzias_latipes
ENSSSCG00000026052LSM14B9134.173ENSORLG00020018191-8535.686Oryzias_latipes_hni
ENSSSCG00000026052LSM14B7551.366ENSORLG00020020553lsm14b9252.044Oryzias_latipes_hni
ENSSSCG00000026052LSM14B9133.788ENSORLG00015013157LSM14B9145.179Oryzias_latipes_hsok
ENSSSCG00000026052LSM14B7551.366ENSORLG00015016862lsm14b9252.044Oryzias_latipes_hsok
ENSSSCG00000026052LSM14B7450.423ENSOMEG00000023917lsm14b9251.226Oryzias_melastigma
ENSSSCG00000026052LSM14B6141.117ENSOMEG00000000171-9740.310Oryzias_melastigma
ENSSSCG00000026052LSM14B10088.852ENSOGAG00000003915LSM14B10091.274Otolemur_garnettii
ENSSSCG00000026052LSM14B10090.820ENSOARG00000014706LSM14B9892.408Ovis_aries
ENSSSCG00000026052LSM14B10078.689ENSPPAG00000035799LSM14B9590.230Pan_paniscus
ENSSSCG00000026052LSM14B10077.377ENSPPRG00000009197LSM14B10091.948Panthera_pardus
ENSSSCG00000026052LSM14B9788.851ENSPTIG00000021518LSM14B10088.851Panthera_tigris_altaica
ENSSSCG00000026052LSM14B10078.689ENSPTRG00000013696LSM14B10092.468Pan_troglodytes
ENSSSCG00000026052LSM14B10079.344ENSPANG00000011747LSM14B10092.987Papio_anubis
ENSSSCG00000026052LSM14B10045.902ENSPKIG00000003275lsm14b8788.298Paramormyrops_kingsleyae
ENSSSCG00000026052LSM14B10081.699ENSPSIG00000014762LSM14B10083.815Pelodiscus_sinensis
ENSSSCG00000026052LSM14B10089.180ENSPEMG00000017688Lsm14b10091.339Peromyscus_maniculatus_bairdii
ENSSSCG00000026052LSM14B10073.443ENSPCIG00000013405LSM14B10088.312Phascolarctos_cinereus
ENSSSCG00000026052LSM14B10039.185ENSPFOG00000005631lsm14b9250.811Poecilia_formosa
ENSSSCG00000026052LSM14B7547.887ENSPLAG00000005793LSM14B9147.222Poecilia_latipinna
ENSSSCG00000026052LSM14B10037.931ENSPLAG00000002449lsm14b9250.815Poecilia_latipinna
ENSSSCG00000026052LSM14B7650.541ENSPMEG00000000745lsm14b9250.541Poecilia_mexicana
ENSSSCG00000026052LSM14B7448.011ENSPMEG00000022953LSM14B9147.075Poecilia_mexicana
ENSSSCG00000026052LSM14B9037.545ENSPREG00000007828LSM14B8741.558Poecilia_reticulata
ENSSSCG00000026052LSM14B10073.115ENSPPYG00000011194LSM14B10081.772Pongo_abelii
ENSSSCG00000026052LSM14B10078.361ENSPCOG00000013625LSM14B10092.208Propithecus_coquereli
ENSSSCG00000026052LSM14B10071.148ENSPVAG00000017918LSM14B10075.079Pteropus_vampyrus
ENSSSCG00000026052LSM14B10045.687ENSPNAG00000012777lsm14b9960.358Pygocentrus_nattereri
ENSSSCG00000026052LSM14B10088.197ENSRNOG00000054557Lsm14b10090.566Rattus_norvegicus
ENSSSCG00000026052LSM14B10090.164ENSRBIG00000033461LSM14B9991.099Rhinopithecus_bieti
ENSSSCG00000026052LSM14B10090.492ENSRROG00000042949LSM14B10090.492Rhinopithecus_roxellana
ENSSSCG00000026052LSM14B10085.047ENSSBOG00000032820LSM14B10090.351Saimiri_boliviensis_boliviensis
ENSSSCG00000026052LSM14B10083.934ENSSHAG00000015528LSM14B10083.934Sarcophilus_harrisii
ENSSSCG00000026052LSM14B7560.224ENSSFOG00015004627lsm14b9260.606Scleropages_formosus
ENSSSCG00000026052LSM14B9741.558ENSSMAG00000000135LSM14B9251.366Scophthalmus_maximus
ENSSSCG00000026052LSM14B7555.710ENSSMAG00000012725lsm14b9255.769Scophthalmus_maximus
ENSSSCG00000026052LSM14B7555.096ENSSDUG00000020977lsm14b9255.978Seriola_dumerili
ENSSSCG00000026052LSM14B9039.726ENSSDUG00000022770LSM14B9252.717Seriola_dumerili
ENSSSCG00000026052LSM14B9039.437ENSSLDG00000011354-8945.525Seriola_lalandi_dorsalis
ENSSSCG00000026052LSM14B6781.159ENSSARG00000007749-10081.159Sorex_araneus
ENSSSCG00000026052LSM14B10078.896ENSSPUG00000014360LSM14B9983.726Sphenodon_punctatus
ENSSSCG00000026052LSM14B9635.836ENSSPAG00000018854-8837.652Stegastes_partitus
ENSSSCG00000026052LSM14B7555.143ENSSPAG00000020915lsm14b9255.493Stegastes_partitus
ENSSSCG00000026052LSM14B10068.831ENSTGUG00000007884LSM14B10082.471Taeniopygia_guttata
ENSSSCG00000026052LSM14B10037.342ENSTRUG00000011354lsm14b10049.118Takifugu_rubripes
ENSSSCG00000026052LSM14B9039.175ENSTRUG00000001529LSM14B9250.409Takifugu_rubripes
ENSSSCG00000026052LSM14B7654.722ENSTNIG00000002445lsm14b9254.670Tetraodon_nigroviridis
ENSSSCG00000026052LSM14B10071.895ENSTTRG00000011043LSM14B83100.000Tursiops_truncatus
ENSSSCG00000026052LSM14B10090.820ENSUAMG00000025298LSM14B9986.779Ursus_americanus
ENSSSCG00000026052LSM14B10090.820ENSUMAG00000000480LSM14B9986.779Ursus_maritimus
ENSSSCG00000026052LSM14B10089.180ENSVVUG00000015920LSM14B10089.180Vulpes_vulpes
ENSSSCG00000026052LSM14B8166.534ENSXETG00000001997lsm14b9976.453Xenopus_tropicalis
ENSSSCG00000026052LSM14B7549.725ENSXMAG00000010013lsm14b9249.864Xiphophorus_maculatus

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