EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000026354 (Gene tree)
Gene ID: 100513617
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 60201 bases
Position: chr10:48062027-48122227
Accession: 100513617
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000032109	PRP4	PF08799.11	1.1e-13	1	1
ENSSSCP00000027625	PRP4	PF08799.11	1.6e-13	1	1
ENSSSCP00000034045	PRP4	PF08799.11	1.6e-13	1	1
ENSSSCP00000049778	PRP4	PF08799.11	1.7e-13	1	1
ENSSSCP00000027625	Prp18	PF02840.15	7.4e-63	1	1
ENSSSCP00000049778	Prp18	PF02840.15	9e-63	1	1
ENSSSCP00000034045	Prp18	PF02840.15	8.6e-62	1	1
ENSSSCP00000032109	Prp18	PF02840.15	5.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000061232	-	3695	XM_021063991	ENSSSCP00000049778	351 (aa)	XP_020919650	A0A287B0Z6
ENSSSCT00000058845	-	5170	XM_021063993	ENSSSCP00000034045	319 (aa)	XP_020919652	A0A286ZQZ9
ENSSSCT00000049462	-	1755	-	ENSSSCP00000032109	299 (aa)	-	A0A286ZKK8
ENSSSCT00000024330	-	5371	-	ENSSSCP00000027625	342 (aa)	-	I3LU26

Gene Model

Click here to download ENSSSCG00000026354's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000026354's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000026354	-	100	99.415	ENSG00000165630	PRPF18	100	99.415	Homo_sapiens
ENSSSCG00000026354	-	100	85.088	ENSAPOG00000024177	prpf18	100	85.088	Acanthochromis_polyacanthus
ENSSSCG00000026354	-	100	100.000	ENSAMEG00000013591	-	100	100.000	Ailuropoda_melanoleuca
ENSSSCG00000026354	-	100	84.503	ENSACIG00000001186	prpf18	100	84.503	Amphilophus_citrinellus
ENSSSCG00000026354	-	98	85.075	ENSAOCG00000006572	prpf18	94	83.382	Amphiprion_ocellaris
ENSSSCG00000026354	-	100	85.380	ENSAPEG00000004564	prpf18	100	85.380	Amphiprion_percula
ENSSSCG00000026354	-	100	83.918	ENSATEG00000000303	prpf18	100	83.918	Anabas_testudineus
ENSSSCG00000026354	-	99	91.176	ENSAPLG00000003387	-	99	91.176	Anas_platyrhynchos
ENSSSCG00000026354	-	100	91.279	ENSACAG00000000818	-	100	91.279	Anolis_carolinensis
ENSSSCG00000026354	-	100	98.860	ENSANAG00000037445	-	100	98.860	Aotus_nancymaae
ENSSSCG00000026354	-	100	84.503	ENSACLG00000026296	prpf18	100	84.503	Astatotilapia_calliptera
ENSSSCG00000026354	-	100	92.857	ENSAMXG00000012848	prpf18	100	83.761	Astyanax_mexicanus
ENSSSCG00000026354	-	100	99.715	ENSBTAG00000017244	PRPF18	100	99.715	Bos_taurus
ENSSSCG00000026354	-	98	38.506	WBGene00009320	F32B6.3	97	38.506	Caenorhabditis_elegans
ENSSSCG00000026354	-	100	98.860	ENSCJAG00000009432	-	100	98.860	Callithrix_jacchus
ENSSSCG00000026354	-	100	100.000	ENSCAFG00000004735	-	100	100.000	Canis_familiaris
ENSSSCG00000026354	-	100	100.000	ENSCAFG00020007712	-	100	100.000	Canis_lupus_dingo
ENSSSCG00000026354	-	100	99.715	ENSCHIG00000000499	-	100	99.715	Capra_hircus
ENSSSCG00000026354	-	100	98.575	ENSTSYG00000003517	-	100	98.575	Carlito_syrichta
ENSSSCG00000026354	-	100	99.415	ENSCPOG00000021069	-	100	99.415	Cavia_porcellus
ENSSSCG00000026354	-	100	98.860	ENSCCAG00000036822	-	100	98.860	Cebus_capucinus
ENSSSCG00000026354	-	100	88.304	ENSCATG00000016633	-	100	88.304	Cercocebus_atys
ENSSSCG00000026354	-	100	99.123	ENSCLAG00000011770	-	100	99.123	Chinchilla_lanigera
ENSSSCG00000026354	-	100	99.430	ENSCSAG00000013109	-	100	99.430	Chlorocebus_sabaeus
ENSSSCG00000026354	-	100	88.764	ENSCPBG00000003100	-	100	89.326	Chrysemys_picta_bellii
ENSSSCG00000026354	-	99	54.412	ENSCING00000020481	-	97	54.412	Ciona_intestinalis
ENSSSCG00000026354	-	99	54.335	ENSCSAVG00000010546	-	99	54.360	Ciona_savignyi
ENSSSCG00000026354	-	100	99.145	ENSCANG00000034900	-	100	99.145	Colobus_angolensis_palliatus
ENSSSCG00000026354	-	100	98.830	ENSCGRG00001023665	Prpf18	100	98.830	Cricetulus_griseus_chok1gshd
ENSSSCG00000026354	-	100	98.830	ENSCGRG00000014690	Prpf18	100	98.830	Cricetulus_griseus_crigri
ENSSSCG00000026354	-	100	83.282	ENSCSEG00000005536	prpf18	100	83.282	Cynoglossus_semilaevis
ENSSSCG00000026354	-	100	83.918	ENSCVAG00000012401	prpf18	100	83.918	Cyprinodon_variegatus
ENSSSCG00000026354	-	100	84.503	ENSDARG00000058306	prpf18	100	84.503	Danio_rerio
ENSSSCG00000026354	-	100	98.830	ENSDNOG00000035607	-	100	98.830	Dasypus_novemcinctus
ENSSSCG00000026354	-	100	99.123	ENSDORG00000000858	Prpf18	100	99.123	Dipodomys_ordii
ENSSSCG00000026354	-	99	51.327	FBgn0027784	Prp18	98	51.032	Drosophila_melanogaster
ENSSSCG00000026354	-	100	87.135	ENSETEG00000015060	-	100	87.135	Echinops_telfairi
ENSSSCG00000026354	-	100	66.859	ENSEBUG00000016502	prpf18	99	65.994	Eptatretus_burgeri
ENSSSCG00000026354	-	100	99.715	ENSEASG00005019373	-	100	99.715	Equus_asinus_asinus
ENSSSCG00000026354	-	100	99.715	ENSECAG00000006997	PRPF18	100	99.715	Equus_caballus
ENSSSCG00000026354	-	92	63.608	ENSEEUG00000001171	-	100	63.608	Erinaceus_europaeus
ENSSSCG00000026354	-	100	81.924	ENSELUG00000022190	prpf18	100	81.924	Esox_lucius
ENSSSCG00000026354	-	100	99.715	ENSFCAG00000004436	-	100	99.715	Felis_catus
ENSSSCG00000026354	-	93	90.769	ENSFALG00000001912	-	97	90.769	Ficedula_albicollis
ENSSSCG00000026354	-	94	99.062	ENSFDAG00000014026	-	100	99.062	Fukomys_damarensis
ENSSSCG00000026354	-	99	64.638	ENSFDAG00000010713	-	97	64.638	Fukomys_damarensis
ENSSSCG00000026354	-	80	89.011	ENSFHEG00000020125	prpf18	98	89.139	Fundulus_heteroclitus
ENSSSCG00000026354	-	99	79.765	ENSGMOG00000012210	prpf18	99	79.765	Gadus_morhua
ENSSSCG00000026354	-	100	91.813	ENSGALG00000043593	-	100	91.813	Gallus_gallus
ENSSSCG00000026354	-	100	82.749	ENSGAFG00000006034	prpf18	100	82.749	Gambusia_affinis
ENSSSCG00000026354	-	100	81.287	ENSGACG00000012232	prpf18	100	81.287	Gasterosteus_aculeatus
ENSSSCG00000026354	-	100	92.105	ENSGAGG00000016878	-	100	92.105	Gopherus_agassizii
ENSSSCG00000026354	-	93	99.385	ENSGGOG00000025188	-	96	99.385	Gorilla_gorilla
ENSSSCG00000026354	-	100	84.503	ENSHBUG00000010264	prpf18	100	84.503	Haplochromis_burtoni
ENSSSCG00000026354	-	100	99.415	ENSHGLG00000018534	PRPF18	100	99.415	Heterocephalus_glaber_female
ENSSSCG00000026354	-	94	99.375	ENSHGLG00100012161	-	98	99.375	Heterocephalus_glaber_male
ENSSSCG00000026354	-	100	83.918	ENSHCOG00000015987	prpf18	100	83.918	Hippocampus_comes
ENSSSCG00000026354	-	100	81.870	ENSIPUG00000007432	prpf18	100	82.720	Ictalurus_punctatus
ENSSSCG00000026354	-	100	97.661	ENSSTOG00000008735	-	100	97.661	Ictidomys_tridecemlineatus
ENSSSCG00000026354	-	100	99.415	ENSJJAG00000024041	-	100	99.415	Jaculus_jaculus
ENSSSCG00000026354	-	100	77.160	ENSJJAG00000015191	-	100	77.160	Jaculus_jaculus
ENSSSCG00000026354	-	100	83.438	ENSKMAG00000012124	prpf18	100	83.438	Kryptolebias_marmoratus
ENSSSCG00000026354	-	99	83.432	ENSLBEG00000028466	prpf18	99	83.432	Labrus_bergylta
ENSSSCG00000026354	-	100	86.257	ENSLACG00000009885	prpf18	100	86.257	Latimeria_chalumnae
ENSSSCG00000026354	-	100	90.058	ENSLOCG00000016736	prpf18	100	90.058	Lepisosteus_oculatus
ENSSSCG00000026354	-	100	99.415	ENSLAFG00000007753	-	100	99.415	Loxodonta_africana
ENSSSCG00000026354	-	100	99.430	ENSMFAG00000000540	-	100	99.430	Macaca_fascicularis
ENSSSCG00000026354	-	100	99.430	ENSMMUG00000015071	PRPF18	100	99.430	Macaca_mulatta
ENSSSCG00000026354	-	100	99.430	ENSMNEG00000024679	-	100	99.430	Macaca_nemestrina
ENSSSCG00000026354	-	100	96.321	ENSMLEG00000031715	-	100	96.321	Mandrillus_leucophaeus
ENSSSCG00000026354	-	100	83.041	ENSMAMG00000006610	prpf18	100	83.041	Mastacembelus_armatus
ENSSSCG00000026354	-	100	84.503	ENSMZEG00005019392	prpf18	100	84.503	Maylandia_zebra
ENSSSCG00000026354	-	100	91.813	ENSMGAG00000005023	-	100	91.813	Meleagris_gallopavo
ENSSSCG00000026354	-	100	99.145	ENSMICG00000006572	-	100	99.145	Microcebus_murinus
ENSSSCG00000026354	-	100	99.415	ENSMOCG00000021468	Prpf18	100	99.415	Microtus_ochrogaster
ENSSSCG00000026354	-	100	82.749	ENSMMOG00000013012	prpf18	100	82.749	Mola_mola
ENSSSCG00000026354	-	96	92.604	ENSMODG00000016902	-	92	92.604	Monodelphis_domestica
ENSSSCG00000026354	-	100	85.673	ENSMODG00000024043	-	100	85.673	Monodelphis_domestica
ENSSSCG00000026354	-	100	77.714	ENSMALG00000005486	prpf18	100	78.000	Monopterus_albus
ENSSSCG00000026354	-	100	98.830	MGP_CAROLIEiJ_G0023143	Prpf18	100	98.830	Mus_caroli
ENSSSCG00000026354	-	100	98.538	ENSMUSG00000039449	Prpf18	100	98.630	Mus_musculus
ENSSSCG00000026354	-	100	99.123	MGP_PahariEiJ_G0019203	Prpf18	100	99.123	Mus_pahari
ENSSSCG00000026354	-	100	98.246	MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	Mus_spretus
ENSSSCG00000026354	-	100	99.708	ENSMPUG00000000938	-	100	99.708	Mustela_putorius_furo
ENSSSCG00000026354	-	100	99.123	ENSMLUG00000009200	-	100	99.123	Myotis_lucifugus
ENSSSCG00000026354	-	67	91.739	ENSNGAG00000023550	-	82	91.739	Nannospalax_galili
ENSSSCG00000026354	-	100	98.830	ENSNGAG00000012500	-	100	98.830	Nannospalax_galili
ENSSSCG00000026354	-	100	84.503	ENSNBRG00000001778	prpf18	100	84.503	Neolamprologus_brichardi
ENSSSCG00000026354	-	100	99.430	ENSNLEG00000012186	-	100	99.430	Nomascus_leucogenys
ENSSSCG00000026354	-	100	64.912	ENSMEUG00000005032	-	100	64.912	Notamacropus_eugenii
ENSSSCG00000026354	-	92	77.737	ENSOPRG00000002153	-	100	80.755	Ochotona_princeps
ENSSSCG00000026354	-	100	98.538	ENSODEG00000003770	-	100	98.538	Octodon_degus
ENSSSCG00000026354	-	98	83.881	ENSONIG00000014854	prpf18	96	83.881	Oreochromis_niloticus
ENSSSCG00000026354	-	100	94.737	ENSOANG00000015404	-	100	94.737	Ornithorhynchus_anatinus
ENSSSCG00000026354	-	100	99.708	ENSOCUG00000027756	-	100	95.029	Oryctolagus_cuniculus
ENSSSCG00000026354	-	100	82.336	ENSORLG00000010293	prpf18	100	82.336	Oryzias_latipes
ENSSSCG00000026354	-	100	85.312	ENSORLG00020001530	prpf18	100	85.312	Oryzias_latipes_hni
ENSSSCG00000026354	-	100	84.211	ENSORLG00015013705	prpf18	100	84.211	Oryzias_latipes_hsok
ENSSSCG00000026354	-	100	85.088	ENSOMEG00000009167	prpf18	100	85.088	Oryzias_melastigma
ENSSSCG00000026354	-	100	98.830	ENSOGAG00000007294	-	100	98.830	Otolemur_garnettii
ENSSSCG00000026354	-	100	99.715	ENSOARG00000006243	-	100	99.715	Ovis_aries
ENSSSCG00000026354	-	100	99.430	ENSPPAG00000041959	-	100	99.430	Pan_paniscus
ENSSSCG00000026354	-	100	99.708	ENSPPRG00000000107	-	100	99.708	Panthera_pardus
ENSSSCG00000026354	-	100	99.415	ENSPTIG00000021094	-	100	99.415	Panthera_tigris_altaica
ENSSSCG00000026354	-	100	99.430	ENSPTRG00000002306	PRPF18	100	99.430	Pan_troglodytes
ENSSSCG00000026354	-	100	99.145	ENSPANG00000023346	-	100	99.145	Papio_anubis
ENSSSCG00000026354	-	86	98.113	ENSPKIG00000014128	prpf18	96	82.621	Paramormyrops_kingsleyae
ENSSSCG00000026354	-	100	92.398	ENSPSIG00000016064	-	100	92.398	Pelodiscus_sinensis
ENSSSCG00000026354	-	100	82.407	ENSPMGG00000016486	prpf18	100	82.407	Periophthalmus_magnuspinnatus
ENSSSCG00000026354	-	100	99.123	ENSPEMG00000013704	Prpf18	100	99.123	Peromyscus_maniculatus_bairdii
ENSSSCG00000026354	-	100	74.566	ENSPMAG00000000204	prpf18	100	74.566	Petromyzon_marinus
ENSSSCG00000026354	-	93	96.000	ENSPCIG00000012963	-	99	96.203	Phascolarctos_cinereus
ENSSSCG00000026354	-	100	81.481	ENSPFOG00000017611	prpf18	100	81.481	Poecilia_formosa
ENSSSCG00000026354	-	100	83.041	ENSPLAG00000000369	prpf18	100	83.041	Poecilia_latipinna
ENSSSCG00000026354	-	100	83.041	ENSPMEG00000005183	prpf18	100	83.041	Poecilia_mexicana
ENSSSCG00000026354	-	100	82.456	ENSPREG00000015232	prpf18	100	82.456	Poecilia_reticulata
ENSSSCG00000026354	-	100	99.123	ENSPPYG00000002101	PRPF18	100	99.123	Pongo_abelii
ENSSSCG00000026354	-	97	93.574	ENSPCAG00000010833	-	100	80.409	Procavia_capensis
ENSSSCG00000026354	-	100	91.813	ENSPCOG00000013057	-	100	91.813	Propithecus_coquereli
ENSSSCG00000026354	-	100	61.404	ENSPVAG00000002947	-	100	61.404	Pteropus_vampyrus
ENSSSCG00000026354	-	100	84.503	ENSPNYG00000003554	prpf18	100	84.503	Pundamilia_nyererei
ENSSSCG00000026354	-	100	84.900	ENSPNAG00000023151	prpf18	100	84.900	Pygocentrus_nattereri
ENSSSCG00000026354	-	100	98.246	ENSRNOG00000018396	Prpf18	100	98.246	Rattus_norvegicus
ENSSSCG00000026354	-	100	98.860	ENSRBIG00000028028	-	100	98.860	Rhinopithecus_bieti
ENSSSCG00000026354	-	100	99.145	ENSRROG00000040695	-	100	99.145	Rhinopithecus_roxellana
ENSSSCG00000026354	-	100	98.860	ENSSBOG00000034482	-	100	98.860	Saimiri_boliviensis_boliviensis
ENSSSCG00000026354	-	100	77.193	ENSSHAG00000009669	-	100	77.193	Sarcophilus_harrisii
ENSSSCG00000026354	-	100	96.199	ENSSHAG00000016463	-	100	96.199	Sarcophilus_harrisii
ENSSSCG00000026354	-	100	82.407	ENSSFOG00015022118	prpf18	100	82.407	Scleropages_formosus
ENSSSCG00000026354	-	76	46.694	ENSSFOG00015021154	-	89	51.905	Scleropages_formosus
ENSSSCG00000026354	-	100	82.749	ENSSMAG00000005308	prpf18	100	82.749	Scophthalmus_maximus
ENSSSCG00000026354	-	100	84.795	ENSSDUG00000015428	prpf18	100	84.795	Seriola_dumerili
ENSSSCG00000026354	-	100	84.795	ENSSLDG00000023989	prpf18	100	84.795	Seriola_lalandi_dorsalis
ENSSSCG00000026354	-	100	69.298	ENSSARG00000005307	-	100	69.298	Sorex_araneus
ENSSSCG00000026354	-	100	92.105	ENSSPUG00000002619	-	100	92.105	Sphenodon_punctatus
ENSSSCG00000026354	-	100	84.211	ENSSPAG00000019502	prpf18	100	84.211	Stegastes_partitus
ENSSSCG00000026354	-	100	91.813	ENSTGUG00000002286	-	100	91.813	Taeniopygia_guttata
ENSSSCG00000026354	-	100	81.871	ENSTRUG00000011278	prpf18	100	81.871	Takifugu_rubripes
ENSSSCG00000026354	-	100	81.579	ENSTNIG00000000911	prpf18	100	81.579	Tetraodon_nigroviridis
ENSSSCG00000026354	-	80	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSSSCG00000026354	-	100	99.123	ENSTTRG00000011117	PRPF18	100	99.123	Tursiops_truncatus
ENSSSCG00000026354	-	95	96.615	ENSUAMG00000001815	-	94	96.615	Ursus_americanus
ENSSSCG00000026354	-	100	95.029	ENSUMAG00000012329	-	100	95.029	Ursus_maritimus
ENSSSCG00000026354	-	100	93.860	ENSVPAG00000011486	-	100	93.860	Vicugna_pacos
ENSSSCG00000026354	-	100	100.000	ENSVVUG00000005453	-	100	100.000	Vulpes_vulpes
ENSSSCG00000026354	-	100	80.580	ENSXETG00000024057	prpf18	100	80.580	Xenopus_tropicalis
ENSSSCG00000026354	-	100	82.267	ENSXCOG00000020414	prpf18	100	82.267	Xiphophorus_couchianus
ENSSSCG00000026354	-	100	82.749	ENSXMAG00000004713	prpf18	91	82.749	Xiphophorus_maculatus