EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000026896 (Gene tree)
Gene ID: 100518830
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 14447 bases
Position: chr3:6374313-6388759
Accession: 100518830
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000021784	zf-CCCH	PF00642.24	2.7e-20	1	2
ENSSSCP00000021784	zf-CCCH	PF00642.24	2.7e-20	2	2
ENSSSCP00000021784	zf-CCHC	PF00098.23	5.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000031676	CPSF4-201	1896	XM_003124302	ENSSSCP00000021784	244 (aa)	XP_003124350	I3LCK9

Gene Model

Click here to download ENSSSCG00000026896's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03015	mRNA surveillance pathway	KEGG
ssc05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000026896's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000026896	CPSF4	100	99.590	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSSSCG00000026896	CPSF4	64	68.362	ENSAPOG00000004921	cpsf4	100	68.362	Acanthochromis_polyacanthus
ENSSSCG00000026896	CPSF4	100	90.335	ENSAMEG00000006252	CPSF4	100	90.335	Ailuropoda_melanoleuca
ENSSSCG00000026896	CPSF4	100	87.705	ENSACIG00000009248	cpsf4	100	87.705	Amphilophus_citrinellus
ENSSSCG00000026896	CPSF4	100	81.132	ENSAOCG00000019616	cpsf4	100	81.132	Amphiprion_ocellaris
ENSSSCG00000026896	CPSF4	100	81.132	ENSAPEG00000011679	cpsf4	100	81.132	Amphiprion_percula
ENSSSCG00000026896	CPSF4	100	85.200	ENSATEG00000007010	cpsf4	100	85.425	Anabas_testudineus
ENSSSCG00000026896	CPSF4	100	83.271	ENSACAG00000012941	CPSF4	89	85.130	Anolis_carolinensis
ENSSSCG00000026896	CPSF4	100	90.335	ENSANAG00000021360	CPSF4	100	90.335	Aotus_nancymaae
ENSSSCG00000026896	CPSF4	100	81.148	ENSACLG00000010374	cpsf4	100	81.148	Astatotilapia_calliptera
ENSSSCG00000026896	CPSF4	100	79.630	ENSAMXG00000031647	cpsf4	100	80.741	Astyanax_mexicanus
ENSSSCG00000026896	CPSF4	100	98.361	ENSBTAG00000002090	CPSF4	100	98.361	Bos_taurus
ENSSSCG00000026896	CPSF4	100	90.335	ENSCJAG00000015826	CPSF4	100	90.335	Callithrix_jacchus
ENSSSCG00000026896	CPSF4	100	89.963	ENSCAFG00000015036	CPSF4	100	89.963	Canis_familiaris
ENSSSCG00000026896	CPSF4	100	81.413	ENSCAFG00020014462	CPSF4	100	83.643	Canis_lupus_dingo
ENSSSCG00000026896	CPSF4	100	89.591	ENSCHIG00000014313	CPSF4	100	89.591	Capra_hircus
ENSSSCG00000026896	CPSF4	88	92.130	ENSTSYG00000008195	-	99	91.556	Carlito_syrichta
ENSSSCG00000026896	CPSF4	100	90.204	ENSTSYG00000014604	-	100	90.204	Carlito_syrichta
ENSSSCG00000026896	CPSF4	100	98.770	ENSTSYG00000005712	-	100	98.770	Carlito_syrichta
ENSSSCG00000026896	CPSF4	79	88.073	ENSCAPG00000013881	CPSF4	87	88.073	Cavia_aperea
ENSSSCG00000026896	CPSF4	100	99.590	ENSCPOG00000001783	CPSF4	100	99.590	Cavia_porcellus
ENSSSCG00000026896	CPSF4	100	90.335	ENSCCAG00000028291	CPSF4	100	90.335	Cebus_capucinus
ENSSSCG00000026896	CPSF4	100	90.984	ENSCATG00000038440	CPSF4	100	90.335	Cercocebus_atys
ENSSSCG00000026896	CPSF4	100	90.335	ENSCLAG00000007050	CPSF4	100	90.335	Chinchilla_lanigera
ENSSSCG00000026896	CPSF4	100	90.335	ENSCSAG00000017795	CPSF4	100	90.335	Chlorocebus_sabaeus
ENSSSCG00000026896	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSSSCG00000026896	CPSF4	78	81.944	ENSCPBG00000020869	CPSF4	100	84.259	Chrysemys_picta_bellii
ENSSSCG00000026896	CPSF4	96	56.299	ENSCING00000021080	-	97	55.906	Ciona_intestinalis
ENSSSCG00000026896	CPSF4	96	52.669	ENSCSAVG00000011469	-	97	50.890	Ciona_savignyi
ENSSSCG00000026896	CPSF4	100	91.393	ENSCANG00000019384	CPSF4	100	90.335	Colobus_angolensis_palliatus
ENSSSCG00000026896	CPSF4	100	99.590	ENSCGRG00001024184	Cpsf4	100	99.590	Cricetulus_griseus_chok1gshd
ENSSSCG00000026896	CPSF4	100	90.335	ENSCGRG00000013892	Cpsf4	100	90.335	Cricetulus_griseus_crigri
ENSSSCG00000026896	CPSF4	100	79.623	ENSCSEG00000019055	cpsf4	100	79.623	Cynoglossus_semilaevis
ENSSSCG00000026896	CPSF4	100	80.377	ENSCVAG00000016528	cpsf4	100	80.377	Cyprinodon_variegatus
ENSSSCG00000026896	CPSF4	100	79.336	ENSDARG00000020217	cpsf4	100	79.705	Danio_rerio
ENSSSCG00000026896	CPSF4	100	89.963	ENSDNOG00000006344	CPSF4	100	89.963	Dasypus_novemcinctus
ENSSSCG00000026896	CPSF4	79	87.558	ENSDORG00000000742	Cpsf4	100	87.558	Dipodomys_ordii
ENSSSCG00000026896	CPSF4	100	51.505	FBgn0015621	Clp	99	53.082	Drosophila_melanogaster
ENSSSCG00000026896	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSSSCG00000026896	CPSF4	99	71.774	ENSEBUG00000012552	cpsf4	98	70.161	Eptatretus_burgeri
ENSSSCG00000026896	CPSF4	100	99.590	ENSEASG00005002487	CPSF4	100	99.590	Equus_asinus_asinus
ENSSSCG00000026896	CPSF4	100	90.335	ENSECAG00000007525	CPSF4	100	90.335	Equus_caballus
ENSSSCG00000026896	CPSF4	59	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSSSCG00000026896	CPSF4	100	79.412	ENSELUG00000011481	cpsf4	100	79.412	Esox_lucius
ENSSSCG00000026896	CPSF4	100	90.335	ENSFCAG00000015070	CPSF4	100	90.335	Felis_catus
ENSSSCG00000026896	CPSF4	100	94.672	ENSFALG00000013799	CPSF4	100	94.672	Ficedula_albicollis
ENSSSCG00000026896	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSSSCG00000026896	CPSF4	89	88.477	ENSFDAG00000014092	CPSF4	100	88.477	Fukomys_damarensis
ENSSSCG00000026896	CPSF4	100	80.000	ENSFHEG00000010880	cpsf4	100	80.000	Fundulus_heteroclitus
ENSSSCG00000026896	CPSF4	100	80.233	ENSGMOG00000002330	cpsf4	100	80.233	Gadus_morhua
ENSSSCG00000026896	CPSF4	100	94.672	ENSGALG00000004714	CPSF4	100	94.672	Gallus_gallus
ENSSSCG00000026896	CPSF4	99	39.888	ENSGALG00000004441	-	98	38.764	Gallus_gallus
ENSSSCG00000026896	CPSF4	100	79.924	ENSGAFG00000010580	cpsf4	100	79.924	Gambusia_affinis
ENSSSCG00000026896	CPSF4	100	81.102	ENSGACG00000007792	cpsf4	100	81.890	Gasterosteus_aculeatus
ENSSSCG00000026896	CPSF4	100	84.758	ENSGAGG00000021835	CPSF4	100	84.387	Gopherus_agassizii
ENSSSCG00000026896	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSSSCG00000026896	CPSF4	100	90.335	ENSGGOG00000015131	CPSF4	100	90.335	Gorilla_gorilla
ENSSSCG00000026896	CPSF4	100	80.377	ENSHBUG00000013699	cpsf4	100	80.377	Haplochromis_burtoni
ENSSSCG00000026896	CPSF4	100	89.299	ENSHGLG00000017150	CPSF4	100	89.299	Heterocephalus_glaber_female
ENSSSCG00000026896	CPSF4	100	62.295	ENSHGLG00100017302	-	100	62.295	Heterocephalus_glaber_male
ENSSSCG00000026896	CPSF4	86	86.017	ENSHGLG00100009215	-	100	86.017	Heterocephalus_glaber_male
ENSSSCG00000026896	CPSF4	100	79.245	ENSHCOG00000004397	cpsf4	100	79.245	Hippocampus_comes
ENSSSCG00000026896	CPSF4	100	78.967	ENSIPUG00000017147	cpsf4	100	80.074	Ictalurus_punctatus
ENSSSCG00000026896	CPSF4	100	99.180	ENSSTOG00000001688	CPSF4	100	99.180	Ictidomys_tridecemlineatus
ENSSSCG00000026896	CPSF4	100	90.335	ENSJJAG00000019426	Cpsf4	100	90.335	Jaculus_jaculus
ENSSSCG00000026896	CPSF4	100	78.113	ENSKMAG00000015642	cpsf4	100	78.113	Kryptolebias_marmoratus
ENSSSCG00000026896	CPSF4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSSSCG00000026896	CPSF4	100	65.447	ENSLACG00000018470	-	100	64.082	Latimeria_chalumnae
ENSSSCG00000026896	CPSF4	100	81.784	ENSLOCG00000004814	cpsf4	100	84.387	Lepisosteus_oculatus
ENSSSCG00000026896	CPSF4	100	89.963	ENSLAFG00000000159	CPSF4	100	89.963	Loxodonta_africana
ENSSSCG00000026896	CPSF4	100	91.393	ENSMFAG00000001462	CPSF4	100	99.476	Macaca_fascicularis
ENSSSCG00000026896	CPSF4	100	90.335	ENSMMUG00000019191	CPSF4	100	90.335	Macaca_mulatta
ENSSSCG00000026896	CPSF4	100	91.393	ENSMNEG00000032306	CPSF4	100	90.335	Macaca_nemestrina
ENSSSCG00000026896	CPSF4	100	90.984	ENSMLEG00000034721	CPSF4	100	90.335	Mandrillus_leucophaeus
ENSSSCG00000026896	CPSF4	100	80.827	ENSMAMG00000006244	cpsf4	100	80.827	Mastacembelus_armatus
ENSSSCG00000026896	CPSF4	100	80.377	ENSMZEG00005007515	cpsf4	100	80.377	Maylandia_zebra
ENSSSCG00000026896	CPSF4	86	94.286	ENSMGAG00000004235	CPSF4	100	94.286	Meleagris_gallopavo
ENSSSCG00000026896	CPSF4	100	90.335	ENSMAUG00000021253	Cpsf4	100	90.335	Mesocricetus_auratus
ENSSSCG00000026896	CPSF4	100	90.335	ENSMICG00000017429	CPSF4	100	90.335	Microcebus_murinus
ENSSSCG00000026896	CPSF4	100	90.335	ENSMOCG00000014901	Cpsf4	100	90.335	Microtus_ochrogaster
ENSSSCG00000026896	CPSF4	100	80.075	ENSMMOG00000001813	cpsf4	95	87.879	Mola_mola
ENSSSCG00000026896	CPSF4	100	88.476	ENSMODG00000001367	CPSF4	100	88.476	Monodelphis_domestica
ENSSSCG00000026896	CPSF4	100	81.273	ENSMALG00000012611	cpsf4	100	81.273	Monopterus_albus
ENSSSCG00000026896	CPSF4	100	99.590	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.590	Mus_caroli
ENSSSCG00000026896	CPSF4	100	99.590	ENSMUSG00000029625	Cpsf4	100	99.590	Mus_musculus
ENSSSCG00000026896	CPSF4	100	99.590	MGP_PahariEiJ_G0024581	Cpsf4	100	99.590	Mus_pahari
ENSSSCG00000026896	CPSF4	100	100.000	MGP_SPRETEiJ_G0029013	Cpsf4	100	100.000	Mus_spretus
ENSSSCG00000026896	CPSF4	100	90.335	ENSMPUG00000016508	CPSF4	100	90.335	Mustela_putorius_furo
ENSSSCG00000026896	CPSF4	86	98.571	ENSMLUG00000010980	CPSF4	100	98.571	Myotis_lucifugus
ENSSSCG00000026896	CPSF4	100	89.963	ENSNGAG00000001567	Cpsf4	100	89.963	Nannospalax_galili
ENSSSCG00000026896	CPSF4	90	79.668	ENSNBRG00000003943	cpsf4	98	79.668	Neolamprologus_brichardi
ENSSSCG00000026896	CPSF4	100	99.590	ENSNLEG00000011074	CPSF4	100	99.590	Nomascus_leucogenys
ENSSSCG00000026896	CPSF4	100	88.476	ENSMEUG00000006955	CPSF4	100	88.476	Notamacropus_eugenii
ENSSSCG00000026896	CPSF4	100	89.963	ENSOPRG00000013663	CPSF4	100	89.963	Ochotona_princeps
ENSSSCG00000026896	CPSF4	98	85.000	ENSODEG00000018283	-	91	85.000	Octodon_degus
ENSSSCG00000026896	CPSF4	100	73.180	ENSODEG00000009779	-	100	73.180	Octodon_degus
ENSSSCG00000026896	CPSF4	100	90.335	ENSODEG00000011181	-	100	90.335	Octodon_degus
ENSSSCG00000026896	CPSF4	100	80.377	ENSONIG00000008495	cpsf4	100	80.377	Oreochromis_niloticus
ENSSSCG00000026896	CPSF4	100	53.237	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSSSCG00000026896	CPSF4	86	86.325	ENSOANG00000007729	CPSF4	100	86.325	Ornithorhynchus_anatinus
ENSSSCG00000026896	CPSF4	100	89.963	ENSOCUG00000002437	CPSF4	70	89.963	Oryctolagus_cuniculus
ENSSSCG00000026896	CPSF4	100	80.377	ENSORLG00000022798	cpsf4	100	80.377	Oryzias_latipes
ENSSSCG00000026896	CPSF4	100	80.377	ENSORLG00020008548	cpsf4	100	80.377	Oryzias_latipes_hni
ENSSSCG00000026896	CPSF4	100	80.000	ENSORLG00015019575	cpsf4	100	80.000	Oryzias_latipes_hsok
ENSSSCG00000026896	CPSF4	100	79.245	ENSOMEG00000005176	cpsf4	100	79.245	Oryzias_melastigma
ENSSSCG00000026896	CPSF4	100	90.706	ENSOGAG00000010884	CPSF4	100	90.706	Otolemur_garnettii
ENSSSCG00000026896	CPSF4	100	78.388	ENSOARG00000018668	CPSF4	100	77.289	Ovis_aries
ENSSSCG00000026896	CPSF4	100	89.963	ENSPPAG00000043355	CPSF4	100	89.963	Pan_paniscus
ENSSSCG00000026896	CPSF4	100	90.335	ENSPPRG00000003134	CPSF4	100	90.335	Panthera_pardus
ENSSSCG00000026896	CPSF4	89	89.256	ENSPTIG00000005604	CPSF4	90	89.256	Panthera_tigris_altaica
ENSSSCG00000026896	CPSF4	100	89.963	ENSPTRG00000019453	CPSF4	100	89.963	Pan_troglodytes
ENSSSCG00000026896	CPSF4	100	91.393	ENSPANG00000023123	CPSF4	100	90.335	Papio_anubis
ENSSSCG00000026896	CPSF4	100	80.292	ENSPKIG00000014278	cpsf4	100	80.292	Paramormyrops_kingsleyae
ENSSSCG00000026896	CPSF4	79	65.285	ENSPSIG00000018198	-	100	65.285	Pelodiscus_sinensis
ENSSSCG00000026896	CPSF4	78	81.481	ENSPSIG00000011229	CPSF4	100	83.796	Pelodiscus_sinensis
ENSSSCG00000026896	CPSF4	100	81.148	ENSPMGG00000017735	cpsf4	100	78.862	Periophthalmus_magnuspinnatus
ENSSSCG00000026896	CPSF4	100	90.335	ENSPEMG00000004508	Cpsf4	100	90.335	Peromyscus_maniculatus_bairdii
ENSSSCG00000026896	CPSF4	100	88.476	ENSPCIG00000024776	CPSF4	100	88.476	Phascolarctos_cinereus
ENSSSCG00000026896	CPSF4	100	79.924	ENSPFOG00000014912	cpsf4	100	79.924	Poecilia_formosa
ENSSSCG00000026896	CPSF4	100	79.675	ENSPLAG00000009599	cpsf4	100	78.862	Poecilia_latipinna
ENSSSCG00000026896	CPSF4	100	79.924	ENSPMEG00000009790	cpsf4	100	79.924	Poecilia_mexicana
ENSSSCG00000026896	CPSF4	100	79.167	ENSPREG00000018166	cpsf4	100	77.481	Poecilia_reticulata
ENSSSCG00000026896	CPSF4	86	88.034	ENSPPYG00000017378	CPSF4	100	88.034	Pongo_abelii
ENSSSCG00000026896	CPSF4	100	89.219	ENSPCAG00000001892	CPSF4	100	89.219	Procavia_capensis
ENSSSCG00000026896	CPSF4	100	89.963	ENSPCOG00000012771	CPSF4	100	89.963	Propithecus_coquereli
ENSSSCG00000026896	CPSF4	100	83.643	ENSPVAG00000007531	CPSF4	100	83.643	Pteropus_vampyrus
ENSSSCG00000026896	CPSF4	100	80.377	ENSPNYG00000018559	cpsf4	100	80.377	Pundamilia_nyererei
ENSSSCG00000026896	CPSF4	100	81.481	ENSPNAG00000003736	cpsf4	100	81.852	Pygocentrus_nattereri
ENSSSCG00000026896	CPSF4	100	99.180	ENSRNOG00000000985	Cpsf4	100	99.180	Rattus_norvegicus
ENSSSCG00000026896	CPSF4	86	88.889	ENSRBIG00000033886	CPSF4	100	88.889	Rhinopithecus_bieti
ENSSSCG00000026896	CPSF4	100	99.590	ENSRROG00000040431	CPSF4	100	99.590	Rhinopithecus_roxellana
ENSSSCG00000026896	CPSF4	100	90.335	ENSSBOG00000020493	CPSF4	100	99.476	Saimiri_boliviensis_boliviensis
ENSSSCG00000026896	CPSF4	100	88.476	ENSSHAG00000011533	CPSF4	100	88.476	Sarcophilus_harrisii
ENSSSCG00000026896	CPSF4	100	81.522	ENSSFOG00015007883	cpsf4	100	81.522	Scleropages_formosus
ENSSSCG00000026896	CPSF4	100	86.122	ENSSMAG00000006374	cpsf4	100	86.122	Scophthalmus_maximus
ENSSSCG00000026896	CPSF4	100	80.451	ENSSDUG00000018887	cpsf4	100	80.524	Seriola_dumerili
ENSSSCG00000026896	CPSF4	100	80.451	ENSSLDG00000019078	cpsf4	100	81.273	Seriola_lalandi_dorsalis
ENSSSCG00000026896	CPSF4	86	89.316	ENSSARG00000012416	CPSF4	100	89.316	Sorex_araneus
ENSSSCG00000026896	CPSF4	100	85.502	ENSSPUG00000003549	CPSF4	100	84.015	Sphenodon_punctatus
ENSSSCG00000026896	CPSF4	95	64.807	ENSSPUG00000014803	-	97	64.135	Sphenodon_punctatus
ENSSSCG00000026896	CPSF4	100	87.295	ENSSPAG00000006174	cpsf4	100	87.295	Stegastes_partitus
ENSSSCG00000026896	CPSF4	100	93.496	ENSTGUG00000007552	CPSF4	100	93.496	Taeniopygia_guttata
ENSSSCG00000026896	CPSF4	100	79.087	ENSTRUG00000024220	cpsf4	100	79.087	Takifugu_rubripes
ENSSSCG00000026896	CPSF4	100	78.707	ENSTNIG00000006265	cpsf4	100	79.468	Tetraodon_nigroviridis
ENSSSCG00000026896	CPSF4	86	76.923	ENSTBEG00000011406	CPSF4	100	77.350	Tupaia_belangeri
ENSSSCG00000026896	CPSF4	100	78.810	ENSTTRG00000003007	CPSF4	100	78.810	Tursiops_truncatus
ENSSSCG00000026896	CPSF4	91	99.099	ENSUAMG00000008051	CPSF4	85	99.099	Ursus_americanus
ENSSSCG00000026896	CPSF4	100	99.180	ENSUMAG00000009474	CPSF4	100	99.180	Ursus_maritimus
ENSSSCG00000026896	CPSF4	100	99.180	ENSVVUG00000008824	CPSF4	100	99.180	Vulpes_vulpes
ENSSSCG00000026896	CPSF4	100	79.928	ENSXETG00000009892	cpsf4	100	79.211	Xenopus_tropicalis
ENSSSCG00000026896	CPSF4	99	60.902	ENSXETG00000004641	cpsf4l	99	60.526	Xenopus_tropicalis
ENSSSCG00000026896	CPSF4	100	79.545	ENSXCOG00000016040	cpsf4	100	79.545	Xiphophorus_couchianus
ENSSSCG00000026896	CPSF4	100	79.924	ENSXMAG00000024670	cpsf4	100	79.924	Xiphophorus_maculatus