EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000027224 (Gene tree)
Gene ID: 100511501
Gene Symbol: PCBP1
Alias: HNRPE1|HNRPX|hnRNP-E1|hnRNP-X
Full Name: poly(rC) binding protein 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 1071 bases
Position: chr3:72379025-72380095
Accession: 100511501
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000022410	KH_1	PF00013.29	2.4e-51	1	3
ENSSSCP00000022410	KH_1	PF00013.29	2.4e-51	2	3
ENSSSCP00000022410	KH_1	PF00013.29	2.4e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000028976	PCBP1-201	1071	XM_003125057	ENSSSCP00000022410	356 (aa)	XP_003125105	I3LEC2

Gene Model

Click here to download ENSSSCG00000027224's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG
ssc04216	Ferroptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000027224's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000027224	PCBP1	66	41.558	ENSSSCG00000035029	NOVA2	50	41.558
ENSSSCG00000027224	PCBP1	100	79.564	ENSSSCG00000000274	PCBP2	100	80.000
ENSSSCG00000027224	PCBP1	70	40.541	ENSSSCG00000024396	NOVA1	59	40.541
ENSSSCG00000027224	PCBP1	95	30.935	ENSSSCG00000036695	IGF2BP3	60	30.935
ENSSSCG00000027224	PCBP1	99	66.387	ENSSSCG00000023041	PCBP3	91	66.201
ENSSSCG00000027224	PCBP1	56	32.143	ENSSSCG00000011795	IGF2BP2	72	33.696
ENSSSCG00000027224	PCBP1	69	34.667	ENSSSCG00000013538	KHSRP	57	34.722
ENSSSCG00000027224	PCBP1	98	52.975	ENSSSCG00000028446	PCBP4	74	69.048

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000027224	PCBP1	100	99.719	ENSG00000169564	PCBP1	100	99.719	Homo_sapiens
ENSSSCG00000027224	PCBP1	100	97.191	ENSAMEG00000016094	PCBP1	100	97.191	Ailuropoda_melanoleuca
ENSSSCG00000027224	PCBP1	79	91.519	ENSANAG00000022494	-	100	91.519	Aotus_nancymaae
ENSSSCG00000027224	PCBP1	100	88.202	ENSANAG00000026077	-	100	88.202	Aotus_nancymaae
ENSSSCG00000027224	PCBP1	100	88.764	ENSANAG00000023938	-	100	88.764	Aotus_nancymaae
ENSSSCG00000027224	PCBP1	97	95.954	ENSANAG00000026989	-	99	95.954	Aotus_nancymaae
ENSSSCG00000027224	PCBP1	100	85.674	ENSANAG00000033377	-	100	85.674	Aotus_nancymaae
ENSSSCG00000027224	PCBP1	89	87.658	ENSANAG00000027108	-	100	87.658	Aotus_nancymaae
ENSSSCG00000027224	PCBP1	79	94.700	ENSANAG00000031745	-	100	94.700	Aotus_nancymaae
ENSSSCG00000027224	PCBP1	79	94.700	ENSANAG00000019364	-	100	94.700	Aotus_nancymaae
ENSSSCG00000027224	PCBP1	91	99.691	ENSBTAG00000008985	PCBP1	99	99.691	Bos_taurus
ENSSSCG00000027224	PCBP1	100	94.101	ENSCJAG00000038388	-	95	94.101	Callithrix_jacchus
ENSSSCG00000027224	PCBP1	100	99.438	ENSCAFG00000003326	PCBP1	100	99.438	Canis_familiaris
ENSSSCG00000027224	PCBP1	100	99.719	ENSCHIG00000007923	PCBP1	100	99.719	Capra_hircus
ENSSSCG00000027224	PCBP1	100	99.157	ENSTSYG00000027848	PCBP1	100	99.157	Carlito_syrichta
ENSSSCG00000027224	PCBP1	100	99.719	ENSCPOG00000013511	PCBP1	100	99.719	Cavia_porcellus
ENSSSCG00000027224	PCBP1	100	99.719	ENSCCAG00000019842	-	100	99.719	Cebus_capucinus
ENSSSCG00000027224	PCBP1	100	91.011	ENSCCAG00000029186	-	98	91.011	Cebus_capucinus
ENSSSCG00000027224	PCBP1	100	99.719	ENSCATG00000015029	PCBP1	100	99.719	Cercocebus_atys
ENSSSCG00000027224	PCBP1	100	99.157	ENSCLAG00000017909	PCBP1	100	99.157	Chinchilla_lanigera
ENSSSCG00000027224	PCBP1	100	99.719	ENSCSAG00000019441	PCBP1	100	99.719	Chlorocebus_sabaeus
ENSSSCG00000027224	PCBP1	100	89.607	ENSCANG00000032470	-	94	89.607	Colobus_angolensis_palliatus
ENSSSCG00000027224	PCBP1	72	84.314	ENSCANG00000033810	-	87	84.314	Colobus_angolensis_palliatus
ENSSSCG00000027224	PCBP1	100	99.719	ENSCANG00000018039	-	100	99.719	Colobus_angolensis_palliatus
ENSSSCG00000027224	PCBP1	100	99.719	ENSCGRG00001015078	Pcbp1	100	99.719	Cricetulus_griseus_chok1gshd
ENSSSCG00000027224	PCBP1	100	99.719	ENSCGRG00000018899	Pcbp1	100	99.719	Cricetulus_griseus_crigri
ENSSSCG00000027224	PCBP1	80	98.947	ENSDNOG00000036372	PCBP1	99	98.947	Dasypus_novemcinctus
ENSSSCG00000027224	PCBP1	100	99.719	ENSDORG00000008216	Pcbp1	100	99.719	Dipodomys_ordii
ENSSSCG00000027224	PCBP1	100	99.719	ENSFCAG00000022238	PCBP1	100	99.719	Felis_catus
ENSSSCG00000027224	PCBP1	100	99.438	ENSFDAG00000019637	PCBP1	100	99.438	Fukomys_damarensis
ENSSSCG00000027224	PCBP1	100	99.719	ENSGGOG00000028130	PCBP1	100	99.719	Gorilla_gorilla
ENSSSCG00000027224	PCBP1	100	97.472	ENSHGLG00000020243	-	100	97.472	Heterocephalus_glaber_female
ENSSSCG00000027224	PCBP1	100	99.438	ENSHGLG00000020345	Pcbp1	100	99.438	Heterocephalus_glaber_female
ENSSSCG00000027224	PCBP1	100	99.157	ENSHGLG00100019620	-	100	99.157	Heterocephalus_glaber_male
ENSSSCG00000027224	PCBP1	100	99.438	ENSHGLG00100019761	Pcbp1	100	99.438	Heterocephalus_glaber_male
ENSSSCG00000027224	PCBP1	100	99.719	ENSSTOG00000026002	PCBP1	100	99.719	Ictidomys_tridecemlineatus
ENSSSCG00000027224	PCBP1	100	99.719	ENSJJAG00000000737	Pcbp1	100	99.719	Jaculus_jaculus
ENSSSCG00000027224	PCBP1	95	88.427	ENSMFAG00000003400	PCBP1	100	88.427	Macaca_fascicularis
ENSSSCG00000027224	PCBP1	100	99.719	ENSMMUG00000038295	PCBP1	100	99.719	Macaca_mulatta
ENSSSCG00000027224	PCBP1	100	99.719	ENSMNEG00000002934	PCBP1	100	99.719	Macaca_nemestrina
ENSSSCG00000027224	PCBP1	100	99.719	ENSMLEG00000027389	PCBP1	100	99.719	Mandrillus_leucophaeus
ENSSSCG00000027224	PCBP1	100	99.438	ENSMAUG00000009843	Pcbp1	100	99.438	Mesocricetus_auratus
ENSSSCG00000027224	PCBP1	100	99.719	ENSMICG00000038221	PCBP1	100	99.719	Microcebus_murinus
ENSSSCG00000027224	PCBP1	100	99.719	ENSMOCG00000008102	Pcbp1	100	99.719	Microtus_ochrogaster
ENSSSCG00000027224	PCBP1	100	99.719	MGP_CAROLIEiJ_G0028598	Pcbp1	100	99.719	Mus_caroli
ENSSSCG00000027224	PCBP1	100	99.719	ENSMUSG00000051695	Pcbp1	100	99.719	Mus_musculus
ENSSSCG00000027224	PCBP1	100	99.719	MGP_PahariEiJ_G0022335	Pcbp1	100	99.719	Mus_pahari
ENSSSCG00000027224	PCBP1	100	99.719	MGP_SPRETEiJ_G0029609	Pcbp1	100	99.719	Mus_spretus
ENSSSCG00000027224	PCBP1	100	97.191	ENSMPUG00000007175	PCBP1	100	97.191	Mustela_putorius_furo
ENSSSCG00000027224	PCBP1	100	99.719	ENSMLUG00000014173	PCBP1	100	99.719	Myotis_lucifugus
ENSSSCG00000027224	PCBP1	100	99.719	ENSNGAG00000014909	-	100	99.719	Nannospalax_galili
ENSSSCG00000027224	PCBP1	100	99.719	ENSNGAG00000011957	-	100	99.719	Nannospalax_galili
ENSSSCG00000027224	PCBP1	100	99.719	ENSNLEG00000018722	PCBP1	100	99.719	Nomascus_leucogenys
ENSSSCG00000027224	PCBP1	100	83.146	ENSODEG00000000263	PCBP1	100	83.146	Octodon_degus
ENSSSCG00000027224	PCBP1	100	99.719	ENSOCUG00000003634	PCBP1	100	99.719	Oryctolagus_cuniculus
ENSSSCG00000027224	PCBP1	100	97.191	ENSOGAG00000028946	PCBP1	100	97.191	Otolemur_garnettii
ENSSSCG00000027224	PCBP1	100	99.719	ENSOARG00000019516	PCBP1	100	99.719	Ovis_aries
ENSSSCG00000027224	PCBP1	100	97.753	ENSPPAG00000036116	PCBP1	99	98.319	Pan_paniscus
ENSSSCG00000027224	PCBP1	100	99.719	ENSPPRG00000020533	PCBP1	100	99.719	Panthera_pardus
ENSSSCG00000027224	PCBP1	100	99.719	ENSPTIG00000007318	PCBP1	100	99.719	Panthera_tigris_altaica
ENSSSCG00000027224	PCBP1	100	99.719	ENSPTRG00000012025	PCBP1	100	99.719	Pan_troglodytes
ENSSSCG00000027224	PCBP1	100	99.719	ENSPANG00000011314	PCBP1	100	99.719	Papio_anubis
ENSSSCG00000027224	PCBP1	100	99.719	ENSPPYG00000012328	PCBP1	100	99.719	Pongo_abelii
ENSSSCG00000027224	PCBP1	100	99.719	ENSPCOG00000026934	PCBP1	100	99.719	Propithecus_coquereli
ENSSSCG00000027224	PCBP1	93	98.494	ENSRROG00000012514	-	100	98.494	Rhinopithecus_roxellana
ENSSSCG00000027224	PCBP1	100	98.876	ENSRROG00000009684	-	95	98.876	Rhinopithecus_roxellana
ENSSSCG00000027224	PCBP1	100	83.427	ENSSBOG00000035309	-	94	83.427	Saimiri_boliviensis_boliviensis
ENSSSCG00000027224	PCBP1	51	99.444	ENSTBEG00000015706	-	51	99.444	Tupaia_belangeri
ENSSSCG00000027224	PCBP1	91	99.381	ENSVVUG00000028033	PCBP1	99	99.381	Vulpes_vulpes