EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000028124 (Gene tree)
Gene ID: 100626432
Gene Symbol: SNRPN
Alias: HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN
Full Name: small nuclear ribonucleoprotein polypeptide N
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 37972 bases
Position: chrAEMK02000602.1:104563-142534
Accession: 100626432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000034400	LSM	PF01423.22	1.1e-19	1	1
ENSSSCP00000021510	LSM	PF01423.22	1.1e-19	1	1
ENSSSCP00000050033	LSM	PF01423.22	1.1e-19	1	1
ENSSSCP00000055238	LSM	PF01423.22	1.1e-19	1	1
ENSSSCP00000058750	LSM	PF01423.22	1.1e-19	1	1
ENSSSCP00000047251	LSM	PF01423.22	1.7e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000047557	SNRPN-203	1106	-	ENSSSCP00000034400	232 (aa)	-	A0A286ZSF8
ENSSSCT00000029603	SNRPN-204	2791	-	ENSSSCP00000021510	240 (aa)	-	I3LBT8
ENSSSCT00000057952	SNRPN-201	9490	-	ENSSSCP00000047251	232 (aa)	-	A0A287AT45
ENSSSCT00000053916	SNRPN-205	1455	XM_021082173	ENSSSCP00000055238	240 (aa)	XP_020937832	I3LBT8
ENSSSCT00000059592	SNRPN-206	4895	XM_021082172	ENSSSCP00000050033	240 (aa)	XP_020937831	I3LBT8
ENSSSCT00000047152	SNRPN-202	8223	-	ENSSSCP00000058750	240 (aa)	-	I3LBT8

Gene Model

Click here to download ENSSSCG00000028124's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000028124's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000028124	SNRPN	99	74.459	ENSSSCG00000011966	-	100	71.861
ENSSSCG00000028124	SNRPN	95	91.855	ENSSSCG00000040857	-	100	91.342

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000028124	SNRPN	100	99.167	ENSG00000128739	SNRPN	100	100.000	Homo_sapiens
ENSSSCG00000028124	SNRPN	100	99.569	ENSAMEG00000007034	SNRPN	98	99.582	Ailuropoda_melanoleuca
ENSSSCG00000028124	SNRPN	100	99.167	ENSANAG00000034241	SNRPN	100	99.167	Aotus_nancymaae
ENSSSCG00000028124	SNRPN	100	99.583	ENSBTAG00000008251	SNRPN	100	99.583	Bos_taurus
ENSSSCG00000028124	SNRPN	99	98.690	ENSCJAG00000042622	-	96	98.690	Callithrix_jacchus
ENSSSCG00000028124	SNRPN	100	99.167	ENSCJAG00000003759	-	100	99.167	Callithrix_jacchus
ENSSSCG00000028124	SNRPN	100	99.583	ENSCAFG00000010127	SNRPN	100	99.583	Canis_familiaris
ENSSSCG00000028124	SNRPN	100	99.583	ENSCAFG00020024075	SNRPN	100	99.583	Canis_lupus_dingo
ENSSSCG00000028124	SNRPN	100	99.583	ENSCHIG00000017477	SNRPN	100	99.583	Capra_hircus
ENSSSCG00000028124	SNRPN	100	99.167	ENSTSYG00000005248	SNRPN	100	99.167	Carlito_syrichta
ENSSSCG00000028124	SNRPN	100	99.167	ENSCAPG00000003047	SNRPN	100	99.167	Cavia_aperea
ENSSSCG00000028124	SNRPN	100	99.167	ENSCPOG00000020270	SNRPN	100	99.167	Cavia_porcellus
ENSSSCG00000028124	SNRPN	100	99.167	ENSCCAG00000024231	SNRPN	100	99.167	Cebus_capucinus
ENSSSCG00000028124	SNRPN	100	99.167	ENSCATG00000032518	SNRPN	100	99.167	Cercocebus_atys
ENSSSCG00000028124	SNRPN	100	99.167	ENSCLAG00000011376	SNRPN	100	99.167	Chinchilla_lanigera
ENSSSCG00000028124	SNRPN	100	99.167	ENSCSAG00000006406	SNRPN	100	99.167	Chlorocebus_sabaeus
ENSSSCG00000028124	SNRPN	100	98.707	ENSCHOG00000001846	SNRPN	88	98.718	Choloepus_hoffmanni
ENSSSCG00000028124	SNRPN	100	99.167	ENSCANG00000041156	SNRPN	100	99.167	Colobus_angolensis_palliatus
ENSSSCG00000028124	SNRPN	100	98.750	ENSCGRG00001004136	Snrpn	100	98.750	Cricetulus_griseus_chok1gshd
ENSSSCG00000028124	SNRPN	100	98.750	ENSCGRG00000001621	Snrpn	100	98.750	Cricetulus_griseus_crigri
ENSSSCG00000028124	SNRPN	75	92.486	ENSCVAG00000014193	SNRPN	69	92.857	Cyprinodon_variegatus
ENSSSCG00000028124	SNRPN	100	98.276	ENSDNOG00000037060	SNRPN	98	98.326	Dasypus_novemcinctus
ENSSSCG00000028124	SNRPN	100	99.583	ENSDORG00000004527	Snrpn	100	99.583	Dipodomys_ordii
ENSSSCG00000028124	SNRPN	100	99.583	ENSEASG00005017871	SNRPN	100	99.583	Equus_asinus_asinus
ENSSSCG00000028124	SNRPN	100	99.583	ENSECAG00000018148	SNRPN	100	99.583	Equus_caballus
ENSSSCG00000028124	SNRPN	100	99.569	ENSEEUG00000007440	-	100	99.163	Erinaceus_europaeus
ENSSSCG00000028124	SNRPN	100	99.583	ENSFCAG00000022298	-	100	99.583	Felis_catus
ENSSSCG00000028124	SNRPN	100	99.583	ENSFDAG00000016578	-	100	99.583	Fukomys_damarensis
ENSSSCG00000028124	SNRPN	79	86.339	ENSFDAG00000010528	-	86	83.871	Fukomys_damarensis
ENSSSCG00000028124	SNRPN	78	76.243	ENSGMOG00000018161	SNRPN	93	73.239	Gadus_morhua
ENSSSCG00000028124	SNRPN	93	72.558	ENSGGOG00000024469	-	69	83.942	Gorilla_gorilla
ENSSSCG00000028124	SNRPN	100	99.167	ENSGGOG00000003988	SNRPN	100	99.167	Gorilla_gorilla
ENSSSCG00000028124	SNRPN	100	99.167	ENSHGLG00000011924	SNRPN	100	99.167	Heterocephalus_glaber_female
ENSSSCG00000028124	SNRPN	93	80.465	ENSHGLG00000020936	-	88	79.812	Heterocephalus_glaber_female
ENSSSCG00000028124	SNRPN	92	89.671	ENSHGLG00000019812	-	89	90.141	Heterocephalus_glaber_female
ENSSSCG00000028124	SNRPN	100	84.583	ENSHGLG00000002327	-	96	84.416	Heterocephalus_glaber_female
ENSSSCG00000028124	SNRPN	100	82.083	ENSHGLG00100004881	-	96	82.684	Heterocephalus_glaber_male
ENSSSCG00000028124	SNRPN	92	89.671	ENSHGLG00100021056	-	89	90.141	Heterocephalus_glaber_male
ENSSSCG00000028124	SNRPN	100	99.167	ENSHGLG00100016559	SNRPN	100	99.167	Heterocephalus_glaber_male
ENSSSCG00000028124	SNRPN	100	99.167	ENSSTOG00000001339	SNRPN	100	99.167	Ictidomys_tridecemlineatus
ENSSSCG00000028124	SNRPN	100	99.569	ENSLAFG00000009458	SNRPN	99	99.582	Loxodonta_africana
ENSSSCG00000028124	SNRPN	100	99.167	ENSMFAG00000042235	SNRPN	100	99.167	Macaca_fascicularis
ENSSSCG00000028124	SNRPN	100	99.167	ENSMMUG00000023139	SNURF	100	99.167	Macaca_mulatta
ENSSSCG00000028124	SNRPN	100	99.167	ENSMNEG00000031291	SNRPN	100	99.167	Macaca_nemestrina
ENSSSCG00000028124	SNRPN	100	99.167	ENSMLEG00000038837	SNRPN	100	99.167	Mandrillus_leucophaeus
ENSSSCG00000028124	SNRPN	95	85.455	ENSMGAG00000008696	SNRPN	95	85.463	Meleagris_gallopavo
ENSSSCG00000028124	SNRPN	100	99.167	ENSMAUG00000000051	Snrpn	100	99.167	Mesocricetus_auratus
ENSSSCG00000028124	SNRPN	100	99.167	ENSMICG00000042356	SNRPN	100	99.167	Microcebus_murinus
ENSSSCG00000028124	SNRPN	100	99.167	ENSMOCG00000015350	Snrpn	100	99.167	Microtus_ochrogaster
ENSSSCG00000028124	SNRPN	95	93.665	ENSMODG00000013926	-	95	93.421	Monodelphis_domestica
ENSSSCG00000028124	SNRPN	100	99.167	MGP_CAROLIEiJ_G0029815	Snrpn	100	99.167	Mus_caroli
ENSSSCG00000028124	SNRPN	100	99.167	ENSMUSG00000102252	Snrpn	100	99.167	Mus_musculus
ENSSSCG00000028124	SNRPN	100	99.167	MGP_PahariEiJ_G0013040	Snrpn	100	99.167	Mus_pahari
ENSSSCG00000028124	SNRPN	100	99.167	MGP_SPRETEiJ_G0030918	Snrpn	100	99.167	Mus_spretus
ENSSSCG00000028124	SNRPN	100	99.583	ENSMPUG00000014638	-	100	99.583	Mustela_putorius_furo
ENSSSCG00000028124	SNRPN	91	50.711	ENSMPUG00000007115	-	64	70.423	Mustela_putorius_furo
ENSSSCG00000028124	SNRPN	98	62.281	ENSMLUG00000024428	-	62	71.111	Myotis_lucifugus
ENSSSCG00000028124	SNRPN	100	100.000	ENSMLUG00000023361	-	98	100.000	Myotis_lucifugus
ENSSSCG00000028124	SNRPN	88	61.275	ENSMLUG00000025849	-	73	63.057	Myotis_lucifugus
ENSSSCG00000028124	SNRPN	100	99.167	ENSNGAG00000000181	Snrpn	100	99.167	Nannospalax_galili
ENSSSCG00000028124	SNRPN	100	82.917	ENSNLEG00000001376	SNRPN	99	82.917	Nomascus_leucogenys
ENSSSCG00000028124	SNRPN	98	99.123	ENSODEG00000019708	-	96	99.123	Octodon_degus
ENSSSCG00000028124	SNRPN	100	99.167	ENSODEG00000020110	-	100	99.167	Octodon_degus
ENSSSCG00000028124	SNRPN	100	99.583	ENSODEG00000013478	-	100	99.583	Octodon_degus
ENSSSCG00000028124	SNRPN	100	81.034	ENSODEG00000016065	-	87	83.092	Octodon_degus
ENSSSCG00000028124	SNRPN	100	98.755	ENSOCUG00000003532	-	100	98.755	Oryctolagus_cuniculus
ENSSSCG00000028124	SNRPN	76	92.045	ENSORLG00020007490	SNRPN	69	93.452	Oryzias_latipes_hni
ENSSSCG00000028124	SNRPN	76	92.045	ENSORLG00015003332	SNRPN	69	93.452	Oryzias_latipes_hsok
ENSSSCG00000028124	SNRPN	76	92.614	ENSOMEG00000002066	SNRPN	69	94.048	Oryzias_melastigma
ENSSSCG00000028124	SNRPN	100	99.167	ENSOGAG00000007392	SNRPN	100	99.167	Otolemur_garnettii
ENSSSCG00000028124	SNRPN	100	99.583	ENSOARG00000009080	SNRPN	100	99.583	Ovis_aries
ENSSSCG00000028124	SNRPN	100	99.167	ENSPPAG00000027650	SNRPN	100	99.167	Pan_paniscus
ENSSSCG00000028124	SNRPN	99	69.565	ENSPPAG00000034049	-	63	82.014	Pan_paniscus
ENSSSCG00000028124	SNRPN	88	63.902	ENSPPRG00000006957	-	73	70.861	Panthera_pardus
ENSSSCG00000028124	SNRPN	100	99.583	ENSPPRG00000019878	-	100	99.583	Panthera_pardus
ENSSSCG00000028124	SNRPN	100	99.167	ENSPTIG00000004537	SNRPN	100	99.167	Panthera_tigris_altaica
ENSSSCG00000028124	SNRPN	100	99.167	ENSPTRG00000006826	SNRPN	100	99.167	Pan_troglodytes
ENSSSCG00000028124	SNRPN	99	70.000	ENSPTRG00000052400	-	63	82.734	Pan_troglodytes
ENSSSCG00000028124	SNRPN	100	99.167	ENSPANG00000020142	SNRPN	100	99.167	Papio_anubis
ENSSSCG00000028124	SNRPN	95	85.973	ENSPEMG00000013920	-	95	86.842	Peromyscus_maniculatus_bairdii
ENSSSCG00000028124	SNRPN	95	94.737	ENSPEMG00000020979	-	95	94.737	Peromyscus_maniculatus_bairdii
ENSSSCG00000028124	SNRPN	100	99.167	ENSPEMG00000012911	-	100	99.167	Peromyscus_maniculatus_bairdii
ENSSSCG00000028124	SNRPN	95	94.545	ENSPCIG00000004699	-	73	94.273	Phascolarctos_cinereus
ENSSSCG00000028124	SNRPN	75	92.486	ENSPMEG00000020674	SNRPN	69	93.452	Poecilia_mexicana
ENSSSCG00000028124	SNRPN	100	99.167	ENSPPYG00000006269	SNURF	100	99.167	Pongo_abelii
ENSSSCG00000028124	SNRPN	100	99.167	ENSPCOG00000014231	SNRPN	100	99.167	Propithecus_coquereli
ENSSSCG00000028124	SNRPN	100	99.167	ENSRNOG00000059764	Snrpn	100	99.167	Rattus_norvegicus
ENSSSCG00000028124	SNRPN	100	99.167	ENSRBIG00000041765	SNRPN	100	99.167	Rhinopithecus_bieti
ENSSSCG00000028124	SNRPN	100	99.167	ENSRROG00000035157	SNRPN	100	99.167	Rhinopithecus_roxellana
ENSSSCG00000028124	SNRPN	100	98.333	ENSSBOG00000024929	-	100	98.333	Saimiri_boliviensis_boliviensis
ENSSSCG00000028124	SNRPN	100	99.167	ENSSBOG00000000110	-	100	99.167	Saimiri_boliviensis_boliviensis
ENSSSCG00000028124	SNRPN	95	94.118	ENSSHAG00000010257	-	93	93.860	Sarcophilus_harrisii
ENSSSCG00000028124	SNRPN	100	78.017	ENSSARG00000000072	SNRPN	100	78.661	Sorex_araneus
ENSSSCG00000028124	SNRPN	100	99.583	ENSTTRG00000010966	SNRPN	89	99.583	Tursiops_truncatus
ENSSSCG00000028124	SNRPN	96	99.550	ENSUAMG00000016284	SNRPN	78	99.552	Ursus_americanus
ENSSSCG00000028124	SNRPN	100	99.583	ENSUMAG00000025589	SNRPN	100	99.583	Ursus_maritimus
ENSSSCG00000028124	SNRPN	98	99.561	ENSVVUG00000017971	SNRPN	94	99.563	Vulpes_vulpes