EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000028167 (Gene tree)
Gene ID: 100037987
Gene Symbol: SLIRP
Alias: -
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 7833 bases
Position: chr7:100710470-100718302
Accession: 100037987
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000024715	RRM_1	PF00076.22	7.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000031620	-	393	-	ENSSSCP00000024715	111 (aa)	-	I3LKV0

Gene Model

Click here to download ENSSSCG00000028167's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000028167's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000028167	SLIRP	69	30.769	ENSSSCG00000021591	-	50	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000028167	SLIRP	87	68.367	ENSG00000119705	SLIRP	93	80.282	Homo_sapiens
ENSSSCG00000028167	SLIRP	68	58.667	ENSAPOG00000001298	slirp	75	58.667	Acanthochromis_polyacanthus
ENSSSCG00000028167	SLIRP	82	79.121	ENSAMEG00000003975	SLIRP	100	79.121	Ailuropoda_melanoleuca
ENSSSCG00000028167	SLIRP	100	46.847	ENSACIG00000023083	slirp	99	46.847	Amphilophus_citrinellus
ENSSSCG00000028167	SLIRP	78	56.322	ENSAOCG00000006342	slirp	87	56.322	Amphiprion_ocellaris
ENSSSCG00000028167	SLIRP	78	56.322	ENSAPEG00000015917	slirp	87	56.322	Amphiprion_percula
ENSSSCG00000028167	SLIRP	78	56.322	ENSAPEG00000015719	-	88	56.322	Amphiprion_percula
ENSSSCG00000028167	SLIRP	68	55.263	ENSATEG00000013525	slirp	76	55.263	Anabas_testudineus
ENSSSCG00000028167	SLIRP	79	52.273	ENSAMXG00000018693	slirp	88	52.273	Astyanax_mexicanus
ENSSSCG00000028167	SLIRP	100	76.577	ENSCJAG00000016946	SLIRP	100	76.577	Callithrix_jacchus
ENSSSCG00000028167	SLIRP	100	75.676	ENSCAFG00020015876	-	100	75.676	Canis_lupus_dingo
ENSSSCG00000028167	SLIRP	100	77.477	ENSCCAG00000030130	SLIRP	100	77.477	Cebus_capucinus
ENSSSCG00000028167	SLIRP	100	70.270	ENSCATG00000036327	SLIRP	100	70.270	Cercocebus_atys
ENSSSCG00000028167	SLIRP	90	73.000	ENSCSAG00000011736	SLIRP	100	72.973	Chlorocebus_sabaeus
ENSSSCG00000028167	SLIRP	63	55.714	ENSCPBG00000026327	SLIRP	71	55.714	Chrysemys_picta_bellii
ENSSSCG00000028167	SLIRP	67	79.730	ENSCANG00000032892	SLIRP	90	76.136	Colobus_angolensis_palliatus
ENSSSCG00000028167	SLIRP	100	65.766	ENSCGRG00001024068	Slirp	100	65.766	Cricetulus_griseus_chok1gshd
ENSSSCG00000028167	SLIRP	100	65.766	ENSCGRG00000017440	Slirp	100	65.766	Cricetulus_griseus_crigri
ENSSSCG00000028167	SLIRP	81	54.444	ENSCSEG00000015766	slirp	82	54.444	Cynoglossus_semilaevis
ENSSSCG00000028167	SLIRP	73	49.383	ENSCVAG00000012504	slirp	80	49.383	Cyprinodon_variegatus
ENSSSCG00000028167	SLIRP	79	50.000	ENSDARG00000097753	slirp	94	44.860	Danio_rerio
ENSSSCG00000028167	SLIRP	82	74.725	ENSDNOG00000007721	SLIRP	100	67.568	Dasypus_novemcinctus
ENSSSCG00000028167	SLIRP	100	81.081	ENSDORG00000012379	Slirp	100	81.081	Dipodomys_ordii
ENSSSCG00000028167	SLIRP	90	69.000	ENSETEG00000010345	SLIRP	100	68.468	Echinops_telfairi
ENSSSCG00000028167	SLIRP	100	85.586	ENSEASG00005020193	SLIRP	100	85.586	Equus_asinus_asinus
ENSSSCG00000028167	SLIRP	83	69.565	ENSEEUG00000007257	SLIRP	90	69.565	Erinaceus_europaeus
ENSSSCG00000028167	SLIRP	77	52.326	ENSELUG00000016800	slirp	84	52.326	Esox_lucius
ENSSSCG00000028167	SLIRP	80	83.146	ENSFCAG00000036326	SLIRP	91	83.146	Felis_catus
ENSSSCG00000028167	SLIRP	64	50.704	ENSFALG00000012583	SLIRP	72	50.000	Ficedula_albicollis
ENSSSCG00000028167	SLIRP	97	74.336	ENSFDAG00000008347	SLIRP	100	74.336	Fukomys_damarensis
ENSSSCG00000028167	SLIRP	69	48.052	ENSFHEG00000004709	slirp	83	48.052	Fundulus_heteroclitus
ENSSSCG00000028167	SLIRP	86	48.000	ENSGMOG00000016948	slirp	96	48.000	Gadus_morhua
ENSSSCG00000028167	SLIRP	67	51.351	ENSGALG00000031238	SLIRP	75	51.351	Gallus_gallus
ENSSSCG00000028167	SLIRP	82	51.648	ENSGAFG00000010998	slirp	89	51.648	Gambusia_affinis
ENSSSCG00000028167	SLIRP	65	52.778	ENSGACG00000020137	slirp	84	52.778	Gasterosteus_aculeatus
ENSSSCG00000028167	SLIRP	80	53.933	ENSGAGG00000009953	SLIRP	61	53.933	Gopherus_agassizii
ENSSSCG00000028167	SLIRP	87	67.010	ENSGGOG00000011059	-	95	75.000	Gorilla_gorilla
ENSSSCG00000028167	SLIRP	100	72.072	ENSHGLG00000018491	SLIRP	100	72.072	Heterocephalus_glaber_female
ENSSSCG00000028167	SLIRP	100	72.072	ENSHGLG00100014153	SLIRP	100	72.072	Heterocephalus_glaber_male
ENSSSCG00000028167	SLIRP	81	51.111	ENSHCOG00000006795	slirp	90	51.111	Hippocampus_comes
ENSSSCG00000028167	SLIRP	68	53.333	ENSIPUG00000010214	SLIRP	75	53.333	Ictalurus_punctatus
ENSSSCG00000028167	SLIRP	90	82.000	ENSSTOG00000034316	SLIRP	100	81.081	Ictidomys_tridecemlineatus
ENSSSCG00000028167	SLIRP	81	44.444	ENSKMAG00000002038	slirp	87	44.444	Kryptolebias_marmoratus
ENSSSCG00000028167	SLIRP	81	47.778	ENSLBEG00000007564	slirp	88	47.778	Labrus_bergylta
ENSSSCG00000028167	SLIRP	82	49.451	ENSLACG00000013434	SLIRP	87	49.451	Latimeria_chalumnae
ENSSSCG00000028167	SLIRP	90	72.000	ENSMFAG00000042960	SLIRP	100	72.072	Macaca_fascicularis
ENSSSCG00000028167	SLIRP	90	72.000	ENSMMUG00000029256	SLIRP	100	72.072	Macaca_mulatta
ENSSSCG00000028167	SLIRP	90	72.000	ENSMNEG00000028921	SLIRP	100	72.072	Macaca_nemestrina
ENSSSCG00000028167	SLIRP	90	70.588	ENSMLEG00000043644	SLIRP	90	75.000	Mandrillus_leucophaeus
ENSSSCG00000028167	SLIRP	81	54.444	ENSMZEG00005004617	slirp	89	54.444	Maylandia_zebra
ENSSSCG00000028167	SLIRP	100	72.072	ENSMAUG00000003857	Slirp	100	72.072	Mesocricetus_auratus
ENSSSCG00000028167	SLIRP	100	72.072	ENSMICG00000012080	SLIRP	100	72.072	Microcebus_murinus
ENSSSCG00000028167	SLIRP	98	74.312	ENSMOCG00000016019	Slirp	97	74.312	Microtus_ochrogaster
ENSSSCG00000028167	SLIRP	78	52.874	ENSMMOG00000018268	slirp	87	52.874	Mola_mola
ENSSSCG00000028167	SLIRP	63	68.571	ENSMODG00000005207	-	99	68.571	Monodelphis_domestica
ENSSSCG00000028167	SLIRP	81	47.778	ENSMALG00000012581	slirp	90	47.778	Monopterus_albus
ENSSSCG00000028167	SLIRP	97	75.000	MGP_CAROLIEiJ_G0017995	Slirp	100	75.000	Mus_caroli
ENSSSCG00000028167	SLIRP	98	75.229	ENSMUSG00000021040	Slirp	97	75.229	Mus_musculus
ENSSSCG00000028167	SLIRP	98	75.229	MGP_SPRETEiJ_G0018840	Slirp	97	75.229	Mus_spretus
ENSSSCG00000028167	SLIRP	90	81.000	ENSMLUG00000029544	-	100	79.279	Myotis_lucifugus
ENSSSCG00000028167	SLIRP	86	82.105	ENSMLUG00000024998	-	100	78.378	Myotis_lucifugus
ENSSSCG00000028167	SLIRP	97	72.222	ENSNGAG00000016363	Slirp	100	72.222	Nannospalax_galili
ENSSSCG00000028167	SLIRP	92	66.667	ENSNLEG00000027238	-	92	72.500	Nomascus_leucogenys
ENSSSCG00000028167	SLIRP	100	70.270	ENSNLEG00000032459	-	95	76.136	Nomascus_leucogenys
ENSSSCG00000028167	SLIRP	98	76.147	ENSODEG00000012580	SLIRP	99	76.923	Octodon_degus
ENSSSCG00000028167	SLIRP	81	54.444	ENSONIG00000011692	slirp	89	54.444	Oreochromis_niloticus
ENSSSCG00000028167	SLIRP	96	56.481	ENSOANG00000022366	SLIRP	97	56.481	Ornithorhynchus_anatinus
ENSSSCG00000028167	SLIRP	80	53.933	ENSORLG00000010761	slirp	69	53.933	Oryzias_latipes
ENSSSCG00000028167	SLIRP	80	55.056	ENSORLG00020022188	slirp	89	55.056	Oryzias_latipes_hni
ENSSSCG00000028167	SLIRP	99	48.182	ENSORLG00015020171	slirp	100	48.182	Oryzias_latipes_hsok
ENSSSCG00000028167	SLIRP	80	52.809	ENSOMEG00000019321	slirp	89	52.809	Oryzias_melastigma
ENSSSCG00000028167	SLIRP	87	67.010	ENSPPAG00000040710	-	95	75.000	Pan_paniscus
ENSSSCG00000028167	SLIRP	80	83.146	ENSPPRG00000014350	SLIRP	91	83.146	Panthera_pardus
ENSSSCG00000028167	SLIRP	80	83.146	ENSPTIG00000014196	SLIRP	91	83.146	Panthera_tigris_altaica
ENSSSCG00000028167	SLIRP	86	68.421	ENSPTRG00000030691	SLIRP	95	75.000	Pan_troglodytes
ENSSSCG00000028167	SLIRP	100	72.072	ENSPANG00000026323	SLIRP	100	72.072	Papio_anubis
ENSSSCG00000028167	SLIRP	55	54.098	ENSPKIG00000008831	slirp	60	54.098	Paramormyrops_kingsleyae
ENSSSCG00000028167	SLIRP	62	59.420	ENSPMGG00000010541	slirp	79	59.420	Periophthalmus_magnuspinnatus
ENSSSCG00000028167	SLIRP	88	70.707	ENSPEMG00000013234	Slirp	96	67.273	Peromyscus_maniculatus_bairdii
ENSSSCG00000028167	SLIRP	60	52.239	ENSPMAG00000009355	slirp	74	52.239	Petromyzon_marinus
ENSSSCG00000028167	SLIRP	72	62.195	ENSPCIG00000026842	-	88	62.195	Phascolarctos_cinereus
ENSSSCG00000028167	SLIRP	100	45.946	ENSPFOG00000006758	slirp	99	45.946	Poecilia_formosa
ENSSSCG00000028167	SLIRP	100	46.847	ENSPLAG00000011140	slirp	99	46.847	Poecilia_latipinna
ENSSSCG00000028167	SLIRP	100	45.946	ENSPMEG00000019535	slirp	99	45.946	Poecilia_mexicana
ENSSSCG00000028167	SLIRP	100	45.946	ENSPREG00000011673	slirp	99	45.946	Poecilia_reticulata
ENSSSCG00000028167	SLIRP	88	67.347	ENSPPYG00000006030	SLIRP	97	67.890	Pongo_abelii
ENSSSCG00000028167	SLIRP	100	71.171	ENSPCOG00000015159	SLIRP	100	71.171	Propithecus_coquereli
ENSSSCG00000028167	SLIRP	81	58.889	ENSPNAG00000008633	slirp	90	58.889	Pygocentrus_nattereri
ENSSSCG00000028167	SLIRP	88	66.327	ENSRBIG00000035817	-	100	66.972	Rhinopithecus_bieti
ENSSSCG00000028167	SLIRP	90	71.000	ENSRBIG00000032222	-	100	71.171	Rhinopithecus_bieti
ENSSSCG00000028167	SLIRP	68	76.000	ENSRBIG00000031396	-	86	75.581	Rhinopithecus_bieti
ENSSSCG00000028167	SLIRP	69	74.026	ENSRBIG00000032998	-	81	73.864	Rhinopithecus_bieti
ENSSSCG00000028167	SLIRP	80	68.539	ENSRROG00000041312	-	99	69.000	Rhinopithecus_roxellana
ENSSSCG00000028167	SLIRP	69	75.325	ENSRROG00000017133	-	92	75.000	Rhinopithecus_roxellana
ENSSSCG00000028167	SLIRP	90	70.000	ENSRROG00000036656	-	100	70.270	Rhinopithecus_roxellana
ENSSSCG00000028167	SLIRP	68	77.333	ENSRROG00000035604	-	86	76.744	Rhinopithecus_roxellana
ENSSSCG00000028167	SLIRP	79	75.000	ENSSBOG00000020014	SLIRP	95	75.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000028167	SLIRP	67	62.162	ENSSFOG00015011165	slirp	75	62.162	Scleropages_formosus
ENSSSCG00000028167	SLIRP	80	41.573	ENSSMAG00000012930	slirp	87	41.573	Scophthalmus_maximus
ENSSSCG00000028167	SLIRP	88	49.515	ENSSDUG00000021883	slirp	68	49.515	Seriola_dumerili
ENSSSCG00000028167	SLIRP	92	48.598	ENSSLDG00000023136	slirp	97	48.598	Seriola_lalandi_dorsalis
ENSSSCG00000028167	SLIRP	68	50.667	ENSSPUG00000009346	SLIRP	77	50.667	Sphenodon_punctatus
ENSSSCG00000028167	SLIRP	77	48.837	ENSSPAG00000013477	slirp	85	48.837	Stegastes_partitus
ENSSSCG00000028167	SLIRP	77	48.837	ENSTGUG00000012337	SLIRP	81	48.837	Taeniopygia_guttata
ENSSSCG00000028167	SLIRP	80	46.667	ENSTRUG00000020127	slirp	88	46.667	Takifugu_rubripes
ENSSSCG00000028167	SLIRP	100	81.081	ENSUAMG00000022445	SLIRP	100	81.081	Ursus_americanus
ENSSSCG00000028167	SLIRP	100	81.982	ENSUMAG00000007166	SLIRP	100	81.982	Ursus_maritimus
ENSSSCG00000028167	SLIRP	100	77.477	ENSVPAG00000001781	SLIRP	100	77.477	Vicugna_pacos
ENSSSCG00000028167	SLIRP	86	81.250	ENSVVUG00000004436	SLIRP	100	77.477	Vulpes_vulpes
ENSSSCG00000028167	SLIRP	63	55.714	ENSXETG00000030343	SLIRP	79	55.714	Xenopus_tropicalis
ENSSSCG00000028167	SLIRP	100	46.847	ENSXCOG00000009422	slirp	99	46.847	Xiphophorus_couchianus
ENSSSCG00000028167	SLIRP	100	47.748	ENSXMAG00000015655	slirp	99	47.748	Xiphophorus_maculatus