EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000028278 (Gene tree)
Gene ID: 100737040
Gene Symbol: -
Alias: -
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 25557 bases
Position: chr12:52780230-52805786
Accession: 100737040
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000024326	RNA_pol_Rpb1_5	PF04998.17	3.1e-100	1	1
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	1	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	2	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	3	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	4	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	5	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	6	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	7	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	8	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	9	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	10	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	11	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	12	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	13	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	14	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	15	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	16	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	17	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	18	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	19	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	20	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	21	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	22	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	23	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	24	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	25	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	26	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	27	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	28	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	29	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	30	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	31	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	32	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	33	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	34	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	35	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	36	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	37	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	38	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	39	40
ENSSSCP00000024326	RNA_pol_Rpb1_R	PF05001.13	5.6e-27	40	40
ENSSSCP00000024326	RNA_pol_Rpb1_4	PF05000.17	7.1e-38	1	1
ENSSSCP00000024326	RNA_pol_Rpb1_2	PF00623.20	2.2e-74	1	1
ENSSSCP00000024326	RNA_pol_Rpb1_3	PF04983.18	1.2e-46	1	1
ENSSSCP00000024326	RNA_pol_Rpb1_1	PF04997.12	1e-108	1	1
ENSSSCP00000024326	RNA_pol_Rpb1_7	PF04990.12	3.6e-54	1	1
ENSSSCP00000024326	RNA_pol_Rpb1_6	PF04992.14	2.8e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000029425	-	5880	XM_021067825	ENSSSCP00000024326	1959 (aa)	XP_020923484	I3LJR4

Gene Model

Click here to download ENSSSCG00000028278's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03020	RNA polymerase	KEGG
ssc05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000028278's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000028278	-	66	38.106	ENSSSCG00000010327	POLR3A	88	41.667
ENSSSCG00000028278	-	51	34.545	ENSSSCG00000008226	POLR1A	72	34.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000028278	-	82	93.552	ENSAPOG00000006552	polr2a	91	93.544	Acanthochromis_polyacanthus
ENSSSCG00000028278	-	100	98.936	ENSAMEG00000016265	-	100	98.936	Ailuropoda_melanoleuca
ENSSSCG00000028278	-	82	91.569	ENSACIG00000015982	polr2a	81	91.558	Amphilophus_citrinellus
ENSSSCG00000028278	-	97	91.507	ENSAOCG00000004255	polr2a	96	91.496	Amphiprion_ocellaris
ENSSSCG00000028278	-	82	93.614	ENSAPEG00000012623	polr2a	82	93.606	Amphiprion_percula
ENSSSCG00000028278	-	82	93.490	ENSATEG00000019644	polr2a	82	93.482	Anabas_testudineus
ENSSSCG00000028278	-	100	97.665	ENSACAG00000014561	POLR2A	100	97.665	Anolis_carolinensis
ENSSSCG00000028278	-	100	99.239	ENSANAG00000020093	-	100	99.239	Aotus_nancymaae
ENSSSCG00000028278	-	82	93.304	ENSACLG00000006735	polr2a	82	93.296	Astatotilapia_calliptera
ENSSSCG00000028278	-	82	93.862	ENSAMXG00000020046	polr2a	82	93.855	Astyanax_mexicanus
ENSSSCG00000028278	-	100	99.188	ENSBTAG00000046765	POLR2A	100	99.188	Bos_taurus
ENSSSCG00000028278	-	94	69.410	WBGene00000123	ama-1	99	72.727	Caenorhabditis_elegans
ENSSSCG00000028278	-	100	98.782	ENSCAFG00000016532	POLR2A	100	98.882	Canis_familiaris
ENSSSCG00000028278	-	100	98.275	ENSCAFG00020007929	-	100	98.275	Canis_lupus_dingo
ENSSSCG00000028278	-	100	99.188	ENSCHIG00000027173	-	100	99.188	Capra_hircus
ENSSSCG00000028278	-	100	96.751	ENSTSYG00000012803	-	100	97.259	Carlito_syrichta
ENSSSCG00000028278	-	98	94.775	ENSCAPG00000001882	-	98	97.593	Cavia_aperea
ENSSSCG00000028278	-	100	94.863	ENSCPOG00000014812	-	98	97.640	Cavia_porcellus
ENSSSCG00000028278	-	100	99.239	ENSCCAG00000020938	-	100	99.239	Cebus_capucinus
ENSSSCG00000028278	-	100	99.188	ENSCATG00000013680	-	100	99.188	Cercocebus_atys
ENSSSCG00000028278	-	100	99.086	ENSCLAG00000012196	-	100	99.086	Chinchilla_lanigera
ENSSSCG00000028278	-	82	89.821	ENSCSAG00000011644	-	82	89.821	Chlorocebus_sabaeus
ENSSSCG00000028278	-	100	93.581	ENSCPBG00000012697	POLR2A	100	93.581	Chrysemys_picta_bellii
ENSSSCG00000028278	-	99	75.759	ENSCING00000007884	-	99	76.007	Ciona_intestinalis
ENSSSCG00000028278	-	95	83.333	ENSCSAVG00000008334	-	99	83.871	Ciona_savignyi
ENSSSCG00000028278	-	100	98.528	ENSCANG00000010622	-	100	98.528	Colobus_angolensis_palliatus
ENSSSCG00000028278	-	82	92.563	ENSCGRG00001003538	Polr2a	100	92.553	Cricetulus_griseus_chok1gshd
ENSSSCG00000028278	-	82	95.215	ENSCGRG00000012105	Polr2a	95	95.153	Cricetulus_griseus_crigri
ENSSSCG00000028278	-	82	92.932	ENSCSEG00000002635	polr2a	82	92.924	Cynoglossus_semilaevis
ENSSSCG00000028278	-	82	93.738	ENSCVAG00000005156	polr2a	82	93.731	Cyprinodon_variegatus
ENSSSCG00000028278	-	82	93.556	ENSDARG00000099966	polr2a	82	93.548	Danio_rerio
ENSSSCG00000028278	-	100	96.244	ENSDNOG00000016482	-	100	96.244	Dasypus_novemcinctus
ENSSSCG00000028278	-	100	99.239	ENSDORG00000008667	Polr2a	100	99.239	Dipodomys_ordii
ENSSSCG00000028278	-	99	69.361	FBgn0003277	RpII215	99	74.079	Drosophila_melanogaster
ENSSSCG00000028278	-	94	93.659	ENSETEG00000002540	-	87	94.854	Echinops_telfairi
ENSSSCG00000028278	-	81	87.149	ENSEBUG00000013967	polr2a	82	86.559	Eptatretus_burgeri
ENSSSCG00000028278	-	82	96.958	ENSEASG00005019114	-	83	96.958	Equus_asinus_asinus
ENSSSCG00000028278	-	100	99.188	ENSECAG00000018485	POLR2A	100	99.188	Equus_caballus
ENSSSCG00000028278	-	87	98.798	ENSEEUG00000001154	-	95	98.798	Erinaceus_europaeus
ENSSSCG00000028278	-	89	89.094	ENSELUG00000014284	polr2a	84	89.759	Esox_lucius
ENSSSCG00000028278	-	100	99.188	ENSFDAG00000008287	-	100	99.188	Fukomys_damarensis
ENSSSCG00000028278	-	85	93.738	ENSFHEG00000001768	polr2a	99	93.731	Fundulus_heteroclitus
ENSSSCG00000028278	-	99	89.458	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSSSCG00000028278	-	99	94.366	ENSGAFG00000005389	polr2a	99	91.496	Gambusia_affinis
ENSSSCG00000028278	-	99	89.843	ENSGACG00000019366	polr2a	100	87.359	Gasterosteus_aculeatus
ENSSSCG00000028278	-	100	97.416	ENSGGOG00000014800	-	100	97.416	Gorilla_gorilla
ENSSSCG00000028278	-	85	93.304	ENSHBUG00000018937	polr2a	99	93.296	Haplochromis_burtoni
ENSSSCG00000028278	-	100	99.188	ENSHGLG00000012381	POLR2A	100	99.188	Heterocephalus_glaber_female
ENSSSCG00000028278	-	100	99.188	ENSHGLG00100014843	POLR2A	100	99.188	Heterocephalus_glaber_male
ENSSSCG00000028278	-	82	92.994	ENSHCOG00000011874	polr2a	82	92.986	Hippocampus_comes
ENSSSCG00000028278	-	82	93.242	ENSIPUG00000002613	Polr2a	82	93.234	Ictalurus_punctatus
ENSSSCG00000028278	-	100	99.239	ENSSTOG00000001304	-	100	99.239	Ictidomys_tridecemlineatus
ENSSSCG00000028278	-	100	99.137	ENSJJAG00000013049	Polr2a	100	99.137	Jaculus_jaculus
ENSSSCG00000028278	-	80	84.287	ENSKMAG00000016343	polr2a	85	84.475	Kryptolebias_marmoratus
ENSSSCG00000028278	-	82	93.242	ENSLBEG00000027652	polr2a	82	93.234	Labrus_bergylta
ENSSSCG00000028278	-	80	86.574	ENSLACG00000012071	POLR2A	81	86.582	Latimeria_chalumnae
ENSSSCG00000028278	-	91	93.896	ENSLOCG00000013863	polr2a	99	93.602	Lepisosteus_oculatus
ENSSSCG00000028278	-	100	99.188	ENSLAFG00000008626	-	100	99.188	Loxodonta_africana
ENSSSCG00000028278	-	50	97.957	ENSMFAG00000007042	-	99	97.957	Macaca_fascicularis
ENSSSCG00000028278	-	100	99.188	ENSMMUG00000023620	-	100	99.188	Macaca_mulatta
ENSSSCG00000028278	-	100	98.483	ENSMNEG00000040407	-	100	98.483	Macaca_nemestrina
ENSSSCG00000028278	-	99	94.261	ENSMLEG00000030263	-	99	97.957	Mandrillus_leucophaeus
ENSSSCG00000028278	-	82	93.366	ENSMAMG00000003351	polr2a	82	93.358	Mastacembelus_armatus
ENSSSCG00000028278	-	82	93.304	ENSMZEG00005021429	polr2a	82	93.296	Maylandia_zebra
ENSSSCG00000028278	-	50	99.592	ENSMAUG00000021055	-	99	99.592	Mesocricetus_auratus
ENSSSCG00000028278	-	100	99.137	ENSMICG00000013372	-	100	99.137	Microcebus_murinus
ENSSSCG00000028278	-	100	93.337	ENSMOCG00000018279	Polr2a	100	93.552	Microtus_ochrogaster
ENSSSCG00000028278	-	87	92.932	ENSMMOG00000012515	polr2a	95	92.924	Mola_mola
ENSSSCG00000028278	-	100	98.782	ENSMODG00000007009	-	100	98.782	Monodelphis_domestica
ENSSSCG00000028278	-	94	90.780	ENSMALG00000008716	polr2a	99	91.434	Monopterus_albus
ENSSSCG00000028278	-	100	99.188	MGP_CAROLIEiJ_G0016587	Polr2a	100	99.188	Mus_caroli
ENSSSCG00000028278	-	100	99.188	ENSMUSG00000005198	Polr2a	100	99.188	Mus_musculus
ENSSSCG00000028278	-	100	97.420	MGP_PahariEiJ_G0017718	Polr2a	100	97.420	Mus_pahari
ENSSSCG00000028278	-	100	99.188	MGP_SPRETEiJ_G0017423	Polr2a	100	99.188	Mus_spretus
ENSSSCG00000028278	-	100	99.137	ENSMPUG00000009648	-	100	99.137	Mustela_putorius_furo
ENSSSCG00000028278	-	100	98.732	ENSMLUG00000009088	-	100	98.732	Myotis_lucifugus
ENSSSCG00000028278	-	100	99.239	ENSNGAG00000002543	Polr2a	100	99.239	Nannospalax_galili
ENSSSCG00000028278	-	82	91.259	ENSNBRG00000002005	polr2a	81	91.248	Neolamprologus_brichardi
ENSSSCG00000028278	-	100	98.024	ENSNLEG00000009460	-	100	98.024	Nomascus_leucogenys
ENSSSCG00000028278	-	94	99.020	ENSMEUG00000008611	-	92	99.020	Notamacropus_eugenii
ENSSSCG00000028278	-	80	98.800	ENSOPRG00000015116	-	99	98.800	Ochotona_princeps
ENSSSCG00000028278	-	100	91.536	ENSODEG00000017674	-	100	94.416	Octodon_degus
ENSSSCG00000028278	-	82	93.490	ENSONIG00000009231	polr2a	82	93.482	Oreochromis_niloticus
ENSSSCG00000028278	-	100	96.651	ENSOCUG00000017929	-	100	96.909	Oryctolagus_cuniculus
ENSSSCG00000028278	-	82	93.366	ENSORLG00000006431	polr2a	82	93.358	Oryzias_latipes
ENSSSCG00000028278	-	82	93.366	ENSORLG00020010235	polr2a	82	93.358	Oryzias_latipes_hni
ENSSSCG00000028278	-	82	93.366	ENSORLG00015007075	polr2a	82	93.358	Oryzias_latipes_hsok
ENSSSCG00000028278	-	92	93.474	ENSOMEG00000010713	polr2a	100	93.474	Oryzias_melastigma
ENSSSCG00000028278	-	100	99.086	ENSOGAG00000033608	-	100	99.086	Otolemur_garnettii
ENSSSCG00000028278	-	98	98.995	ENSOARG00000013874	-	100	98.995	Ovis_aries
ENSSSCG00000028278	-	93	96.315	ENSPPAG00000043734	-	100	96.650	Pan_paniscus
ENSSSCG00000028278	-	100	98.024	ENSPTRG00000008691	POLR2A	100	98.024	Pan_troglodytes
ENSSSCG00000028278	-	100	98.528	ENSPANG00000024099	-	100	98.528	Papio_anubis
ENSSSCG00000028278	-	77	92.251	ENSPKIG00000005727	polr2a	85	92.251	Paramormyrops_kingsleyae
ENSSSCG00000028278	-	98	95.568	ENSPSIG00000014006	POLR2A	100	95.568	Pelodiscus_sinensis
ENSSSCG00000028278	-	100	93.313	ENSPMGG00000019734	polr2a	99	93.731	Periophthalmus_magnuspinnatus
ENSSSCG00000028278	-	100	99.239	ENSPEMG00000012521	Polr2a	100	99.239	Peromyscus_maniculatus_bairdii
ENSSSCG00000028278	-	96	86.523	ENSPCIG00000028851	-	96	86.523	Phascolarctos_cinereus
ENSSSCG00000028278	-	85	93.676	ENSPFOG00000007890	polr2a	99	93.669	Poecilia_formosa
ENSSSCG00000028278	-	85	93.676	ENSPLAG00000007399	polr2a	99	93.669	Poecilia_latipinna
ENSSSCG00000028278	-	85	93.676	ENSPMEG00000002071	polr2a	99	93.669	Poecilia_mexicana
ENSSSCG00000028278	-	82	93.614	ENSPREG00000013122	polr2a	82	93.606	Poecilia_reticulata
ENSSSCG00000028278	-	100	96.045	ENSPPYG00000007924	-	100	98.174	Pongo_abelii
ENSSSCG00000028278	-	92	99.342	ENSPCAG00000006951	-	92	99.342	Procavia_capensis
ENSSSCG00000028278	-	100	98.035	ENSPCOG00000025260	-	100	98.035	Propithecus_coquereli
ENSSSCG00000028278	-	100	98.985	ENSPVAG00000005069	-	100	98.985	Pteropus_vampyrus
ENSSSCG00000028278	-	83	93.454	ENSPNYG00000022340	polr2a	82	93.358	Pundamilia_nyererei
ENSSSCG00000028278	-	82	93.676	ENSPNAG00000011237	polr2a	82	93.669	Pygocentrus_nattereri
ENSSSCG00000028278	-	100	99.137	ENSRNOG00000028834	Polr2a	100	99.137	Rattus_norvegicus
ENSSSCG00000028278	-	82	98.634	ENSRBIG00000002471	-	100	95.787	Rhinopithecus_bieti
ENSSSCG00000028278	-	100	98.832	ENSRROG00000029583	-	100	98.832	Rhinopithecus_roxellana
ENSSSCG00000028278	-	83	88.000	YDL140C	RPO21	99	80.180	Saccharomyces_cerevisiae
ENSSSCG00000028278	-	100	99.239	ENSSBOG00000000808	-	100	99.239	Saimiri_boliviensis_boliviensis
ENSSSCG00000028278	-	92	98.510	ENSSHAG00000002858	-	84	98.510	Sarcophilus_harrisii
ENSSSCG00000028278	-	82	93.614	ENSSFOG00015023275	polr2a	82	93.606	Scleropages_formosus
ENSSSCG00000028278	-	82	92.994	ENSSMAG00000009137	polr2a	82	92.986	Scophthalmus_maximus
ENSSSCG00000028278	-	82	93.490	ENSSDUG00000020466	polr2a	82	93.482	Seriola_dumerili
ENSSSCG00000028278	-	82	93.490	ENSSLDG00000020613	polr2a	82	93.482	Seriola_lalandi_dorsalis
ENSSSCG00000028278	-	97	94.139	ENSSARG00000005875	-	99	94.139	Sorex_araneus
ENSSSCG00000028278	-	100	93.552	ENSSPAG00000016741	polr2a	94	93.544	Stegastes_partitus
ENSSSCG00000028278	-	99	87.670	ENSTRUG00000012320	polr2a	81	87.655	Takifugu_rubripes
ENSSSCG00000028278	-	99	92.002	ENSTNIG00000010136	polr2a	100	91.993	Tetraodon_nigroviridis
ENSSSCG00000028278	-	75	100.000	ENSTBEG00000013294	-	58	100.000	Tupaia_belangeri
ENSSSCG00000028278	-	100	97.665	ENSTTRG00000014273	-	100	97.665	Tursiops_truncatus
ENSSSCG00000028278	-	96	96.037	ENSUAMG00000014866	-	100	98.700	Ursus_americanus
ENSSSCG00000028278	-	99	97.314	ENSUMAG00000015732	-	100	97.314	Ursus_maritimus
ENSSSCG00000028278	-	65	96.013	ENSVPAG00000008842	-	74	96.013	Vicugna_pacos
ENSSSCG00000028278	-	82	99.007	ENSVVUG00000027878	-	83	99.007	Vulpes_vulpes
ENSSSCG00000028278	-	99	96.201	ENSXETG00000012465	polr2a	100	96.201	Xenopus_tropicalis
ENSSSCG00000028278	-	89	92.105	ENSXCOG00000001804	polr2a	94	91.434	Xiphophorus_couchianus
ENSSSCG00000028278	-	82	93.614	ENSXMAG00000015687	polr2a	82	93.606	Xiphophorus_maculatus