EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000029119 (Gene tree)
Gene ID: 100624623
Gene Symbol: PRPF6
Alias: ANT-1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|bB152O15.1|hPrp6
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 55385 bases
Position: chr17:62806480-62861864
Accession: 100624623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000034664	PRP1_N	PF06424.12	3.3e-57	1	1
ENSSSCP00000020060	PRP1_N	PF06424.12	9.4e-38	1	1
ENSSSCP00000047344	PRP1_N	PF06424.12	9.4e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000022436	PRPF6-201	3082	-	ENSSSCP00000020060	882 (aa)	-	I3L7Q4
ENSSSCT00000051632	PRPF6-203	3452	XM_021077614	ENSSSCP00000047344	882 (aa)	XP_020933273	I3L7Q4
ENSSSCT00000056052	PRPF6-202	6029	XM_021077613	ENSSSCP00000034664	1071 (aa)	XP_020933272	A0A286ZT56

Gene Model

Click here to download ENSSSCG00000029119's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000029119's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000029119	PRPF6	100	96.939	ENSG00000101161	PRPF6	100	97.131	Homo_sapiens
ENSSSCG00000029119	PRPF6	98	92.610	ENSAPOG00000010395	prpf6	97	91.728	Acanthochromis_polyacanthus
ENSSSCG00000029119	PRPF6	100	99.093	ENSAMEG00000001916	PRPF6	99	97.780	Ailuropoda_melanoleuca
ENSSSCG00000029119	PRPF6	100	91.837	ENSACIG00000019862	prpf6	97	91.623	Amphilophus_citrinellus
ENSSSCG00000029119	PRPF6	98	92.494	ENSAOCG00000012988	prpf6	97	91.623	Amphiprion_ocellaris
ENSSSCG00000029119	PRPF6	98	85.566	ENSAPEG00000008301	prpf6	100	86.291	Amphiprion_percula
ENSSSCG00000029119	PRPF6	100	91.497	ENSATEG00000005581	prpf6	97	91.309	Anabas_testudineus
ENSSSCG00000029119	PRPF6	100	97.279	ENSACAG00000006464	PRPF6	96	97.037	Anolis_carolinensis
ENSSSCG00000029119	PRPF6	99	99.469	ENSANAG00000012661	PRPF6	100	98.233	Aotus_nancymaae
ENSSSCG00000029119	PRPF6	98	92.148	ENSACLG00000025875	prpf6	97	91.309	Astatotilapia_calliptera
ENSSSCG00000029119	PRPF6	98	92.610	ENSAMXG00000001929	prpf6	97	91.710	Astyanax_mexicanus
ENSSSCG00000029119	PRPF6	100	99.206	ENSBTAG00000011656	PRPF6	100	99.256	Bos_taurus
ENSSSCG00000029119	PRPF6	100	97.052	ENSCJAG00000010616	PRPF6	100	97.237	Callithrix_jacchus
ENSSSCG00000029119	PRPF6	100	98.753	ENSCAFG00000013165	PRPF6	100	98.831	Canis_familiaris
ENSSSCG00000029119	PRPF6	100	98.753	ENSCAFG00020002050	PRPF6	100	98.831	Canis_lupus_dingo
ENSSSCG00000029119	PRPF6	100	99.206	ENSCHIG00000018187	PRPF6	100	99.256	Capra_hircus
ENSSSCG00000029119	PRPF6	100	97.959	ENSTSYG00000007814	PRPF6	100	98.087	Carlito_syrichta
ENSSSCG00000029119	PRPF6	100	97.052	ENSCAPG00000015077	PRPF6	100	97.165	Cavia_aperea
ENSSSCG00000029119	PRPF6	100	98.413	ENSCPOG00000007518	PRPF6	100	98.512	Cavia_porcellus
ENSSSCG00000029119	PRPF6	99	95.645	ENSCCAG00000024564	PRPF6	100	93.943	Cebus_capucinus
ENSSSCG00000029119	PRPF6	100	96.825	ENSCATG00000037473	PRPF6	100	97.024	Cercocebus_atys
ENSSSCG00000029119	PRPF6	100	94.218	ENSCLAG00000003854	PRPF6	100	94.580	Chinchilla_lanigera
ENSSSCG00000029119	PRPF6	100	91.441	ENSCSAG00000016742	PRPF6	100	91.975	Chlorocebus_sabaeus
ENSSSCG00000029119	PRPF6	90	81.626	ENSCHOG00000003315	-	100	81.626	Choloepus_hoffmanni
ENSSSCG00000029119	PRPF6	100	97.506	ENSCPBG00000013964	PRPF6	98	96.555	Chrysemys_picta_bellii
ENSSSCG00000029119	PRPF6	100	73.116	ENSCING00000008817	-	98	74.098	Ciona_intestinalis
ENSSSCG00000029119	PRPF6	100	96.825	ENSCANG00000038230	PRPF6	100	97.024	Colobus_angolensis_palliatus
ENSSSCG00000029119	PRPF6	100	98.186	ENSCGRG00001022666	Prpf6	100	98.300	Cricetulus_griseus_chok1gshd
ENSSSCG00000029119	PRPF6	98	86.374	ENSCSEG00000018561	prpf6	100	87.035	Cynoglossus_semilaevis
ENSSSCG00000029119	PRPF6	98	92.494	ENSCVAG00000010550	prpf6	97	91.623	Cyprinodon_variegatus
ENSSSCG00000029119	PRPF6	100	91.723	ENSDARG00000091367	prpf6	99	92.169	Danio_rerio
ENSSSCG00000029119	PRPF6	100	97.619	ENSDNOG00000040544	PRPF6	100	97.768	Dasypus_novemcinctus
ENSSSCG00000029119	PRPF6	97	97.313	ENSDORG00000005406	Prpf6	100	97.313	Dipodomys_ordii
ENSSSCG00000029119	PRPF6	99	72.267	FBgn0036828	CG6841	99	71.519	Drosophila_melanogaster
ENSSSCG00000029119	PRPF6	84	98.333	ENSETEG00000004447	PRPF6	85	95.175	Echinops_telfairi
ENSSSCG00000029119	PRPF6	100	86.102	ENSEBUG00000008835	prpf6	99	86.744	Eptatretus_burgeri
ENSSSCG00000029119	PRPF6	100	98.980	ENSEASG00005023115	PRPF6	100	99.044	Equus_asinus_asinus
ENSSSCG00000029119	PRPF6	100	94.444	ENSECAG00000013983	PRPF6	100	94.793	Equus_caballus
ENSSSCG00000029119	PRPF6	93	95.612	ENSEEUG00000000180	PRPF6	81	100.000	Erinaceus_europaeus
ENSSSCG00000029119	PRPF6	100	90.590	ENSELUG00000001945	prpf6	95	89.375	Esox_lucius
ENSSSCG00000029119	PRPF6	100	98.753	ENSFCAG00000001183	PRPF6	100	98.831	Felis_catus
ENSSSCG00000029119	PRPF6	99	91.013	ENSFALG00000006046	-	99	88.338	Ficedula_albicollis
ENSSSCG00000029119	PRPF6	100	97.279	ENSFALG00000010326	-	99	96.347	Ficedula_albicollis
ENSSSCG00000029119	PRPF6	100	98.413	ENSFDAG00000006451	PRPF6	100	98.413	Fukomys_damarensis
ENSSSCG00000029119	PRPF6	100	92.517	ENSFHEG00000000560	prpf6	97	91.832	Fundulus_heteroclitus
ENSSSCG00000029119	PRPF6	100	88.162	ENSGMOG00000015622	prpf6	99	88.795	Gadus_morhua
ENSSSCG00000029119	PRPF6	100	97.052	ENSGALG00000006001	PRPF6	100	97.237	Gallus_gallus
ENSSSCG00000029119	PRPF6	98	87.413	ENSGAFG00000021109	prpf6	97	87.016	Gambusia_affinis
ENSSSCG00000029119	PRPF6	100	90.249	ENSGACG00000002576	prpf6	99	90.755	Gasterosteus_aculeatus
ENSSSCG00000029119	PRPF6	100	97.392	ENSGAGG00000008653	PRPF6	98	96.451	Gopherus_agassizii
ENSSSCG00000029119	PRPF6	100	96.939	ENSGGOG00000016876	PRPF6	100	97.131	Gorilla_gorilla
ENSSSCG00000029119	PRPF6	98	92.148	ENSHBUG00000004496	prpf6	97	91.309	Haplochromis_burtoni
ENSSSCG00000029119	PRPF6	100	98.186	ENSHGLG00000009222	PRPF6	100	98.300	Heterocephalus_glaber_female
ENSSSCG00000029119	PRPF6	100	98.186	ENSHGLG00100016600	PRPF6	100	98.255	Heterocephalus_glaber_male
ENSSSCG00000029119	PRPF6	98	90.878	ENSHCOG00000011513	prpf6	97	90.157	Hippocampus_comes
ENSSSCG00000029119	PRPF6	98	92.841	ENSIPUG00000004912	prpf6	98	91.562	Ictalurus_punctatus
ENSSSCG00000029119	PRPF6	100	95.470	ENSSTOG00000002922	PRPF6	100	95.754	Ictidomys_tridecemlineatus
ENSSSCG00000029119	PRPF6	100	98.186	ENSJJAG00000000836	Prpf6	100	98.300	Jaculus_jaculus
ENSSSCG00000029119	PRPF6	100	91.610	ENSKMAG00000017800	prpf6	97	91.414	Kryptolebias_marmoratus
ENSSSCG00000029119	PRPF6	100	91.043	ENSLBEG00000012582	prpf6	97	90.471	Labrus_bergylta
ENSSSCG00000029119	PRPF6	100	94.104	ENSLOCG00000004827	prpf6	95	94.497	Lepisosteus_oculatus
ENSSSCG00000029119	PRPF6	100	97.052	ENSLAFG00000005272	PRPF6	100	97.237	Loxodonta_africana
ENSSSCG00000029119	PRPF6	100	96.825	ENSMFAG00000037542	PRPF6	100	97.024	Macaca_fascicularis
ENSSSCG00000029119	PRPF6	97	99.307	ENSMMUG00000015558	PRPF6	98	99.307	Macaca_mulatta
ENSSSCG00000029119	PRPF6	100	81.582	ENSMNEG00000045555	PRPF6	100	82.733	Macaca_nemestrina
ENSSSCG00000029119	PRPF6	98	92.263	ENSMAMG00000010718	prpf6	98	91.042	Mastacembelus_armatus
ENSSSCG00000029119	PRPF6	98	91.811	ENSMZEG00005015261	-	99	92.038	Maylandia_zebra
ENSSSCG00000029119	PRPF6	98	92.032	ENSMZEG00005026539	prpf6	98	92.032	Maylandia_zebra
ENSSSCG00000029119	PRPF6	100	97.279	ENSMGAG00000006634	PRPF6	100	97.383	Meleagris_gallopavo
ENSSSCG00000029119	PRPF6	100	98.299	ENSMAUG00000013969	Prpf6	100	98.406	Mesocricetus_auratus
ENSSSCG00000029119	PRPF6	93	97.445	ENSMICG00000017793	PRPF6	99	97.445	Microcebus_murinus
ENSSSCG00000029119	PRPF6	100	98.186	ENSMOCG00000001701	Prpf6	100	98.300	Microtus_ochrogaster
ENSSSCG00000029119	PRPF6	100	90.930	ENSMMOG00000020419	prpf6	100	91.817	Mola_mola
ENSSSCG00000029119	PRPF6	97	98.670	ENSMODG00000017051	PRPF6	99	97.805	Monodelphis_domestica
ENSSSCG00000029119	PRPF6	100	91.723	ENSMALG00000000089	prpf6	100	92.159	Monopterus_albus
ENSSSCG00000029119	PRPF6	100	91.156	MGP_CAROLIEiJ_G0024814	Prpf6	100	98.148	Mus_caroli
ENSSSCG00000029119	PRPF6	100	98.299	ENSMUSG00000002455	Prpf6	100	98.406	Mus_musculus
ENSSSCG00000029119	PRPF6	100	98.299	MGP_PahariEiJ_G0026262	Prpf6	100	98.406	Mus_pahari
ENSSSCG00000029119	PRPF6	100	98.299	MGP_SPRETEiJ_G0025741	Prpf6	100	98.406	Mus_spretus
ENSSSCG00000029119	PRPF6	97	98.927	ENSMPUG00000008673	PRPF6	99	98.927	Mustela_putorius_furo
ENSSSCG00000029119	PRPF6	100	98.526	ENSNGAG00000003365	Prpf6	100	98.618	Nannospalax_galili
ENSSSCG00000029119	PRPF6	98	92.263	ENSNBRG00000015025	prpf6	97	91.414	Neolamprologus_brichardi
ENSSSCG00000029119	PRPF6	100	96.825	ENSNLEG00000010208	PRPF6	100	97.024	Nomascus_leucogenys
ENSSSCG00000029119	PRPF6	100	87.550	ENSMEUG00000009824	-	90	87.977	Notamacropus_eugenii
ENSSSCG00000029119	PRPF6	100	91.837	ENSODEG00000004841	PRPF6	100	92.349	Octodon_degus
ENSSSCG00000029119	PRPF6	98	92.148	ENSONIG00000017406	prpf6	97	91.309	Oreochromis_niloticus
ENSSSCG00000029119	PRPF6	100	97.846	ENSOANG00000004920	PRPF6	100	97.981	Ornithorhynchus_anatinus
ENSSSCG00000029119	PRPF6	100	96.939	ENSOCUG00000014151	PRPF6	100	96.459	Oryctolagus_cuniculus
ENSSSCG00000029119	PRPF6	100	91.270	ENSORLG00000009592	prpf6	96	91.711	Oryzias_latipes
ENSSSCG00000029119	PRPF6	100	91.383	ENSORLG00020001458	prpf6	96	91.817	Oryzias_latipes_hni
ENSSSCG00000029119	PRPF6	100	91.383	ENSORLG00015018762	prpf6	96	91.817	Oryzias_latipes_hsok
ENSSSCG00000029119	PRPF6	98	91.917	ENSOMEG00000012174	prpf6	96	92.136	Oryzias_melastigma
ENSSSCG00000029119	PRPF6	100	89.807	ENSOGAG00000007573	PRPF6	100	90.446	Otolemur_garnettii
ENSSSCG00000029119	PRPF6	100	99.206	ENSOARG00000008776	PRPF6	100	98.629	Ovis_aries
ENSSSCG00000029119	PRPF6	100	96.939	ENSPPAG00000008686	PRPF6	100	97.131	Pan_paniscus
ENSSSCG00000029119	PRPF6	100	98.639	ENSPPRG00000008497	PRPF6	100	98.725	Panthera_pardus
ENSSSCG00000029119	PRPF6	100	98.639	ENSPTIG00000011184	PRPF6	97	98.691	Panthera_tigris_altaica
ENSSSCG00000029119	PRPF6	100	96.939	ENSPTRG00000013765	PRPF6	100	97.131	Pan_troglodytes
ENSSSCG00000029119	PRPF6	100	96.599	ENSPANG00000024135	PRPF6	100	96.812	Papio_anubis
ENSSSCG00000029119	PRPF6	100	93.424	ENSPKIG00000005627	prpf6	99	93.776	Paramormyrops_kingsleyae
ENSSSCG00000029119	PRPF6	100	97.732	ENSPSIG00000007717	PRPF6	100	97.732	Pelodiscus_sinensis
ENSSSCG00000029119	PRPF6	100	89.241	ENSPMGG00000008925	prpf6	97	88.912	Periophthalmus_magnuspinnatus
ENSSSCG00000029119	PRPF6	100	98.186	ENSPEMG00000016036	Prpf6	100	98.300	Peromyscus_maniculatus_bairdii
ENSSSCG00000029119	PRPF6	100	87.670	ENSPMAG00000006144	prpf6	99	87.684	Petromyzon_marinus
ENSSSCG00000029119	PRPF6	100	97.846	ENSPCIG00000017909	PRPF6	100	97.981	Phascolarctos_cinereus
ENSSSCG00000029119	PRPF6	98	92.725	ENSPFOG00000006431	prpf6	97	91.832	Poecilia_formosa
ENSSSCG00000029119	PRPF6	98	92.610	ENSPLAG00000005974	prpf6	97	91.728	Poecilia_latipinna
ENSSSCG00000029119	PRPF6	98	92.841	ENSPMEG00000009977	prpf6	97	91.937	Poecilia_mexicana
ENSSSCG00000029119	PRPF6	98	92.725	ENSPREG00000017993	prpf6	92	92.880	Poecilia_reticulata
ENSSSCG00000029119	PRPF6	100	96.372	ENSPPYG00000011256	PRPF6	100	96.599	Pongo_abelii
ENSSSCG00000029119	PRPF6	97	99.653	ENSPCAG00000006536	PRPF6	88	99.673	Procavia_capensis
ENSSSCG00000029119	PRPF6	100	97.279	ENSPCOG00000016881	PRPF6	100	97.450	Propithecus_coquereli
ENSSSCG00000029119	PRPF6	100	92.063	ENSPVAG00000014316	PRPF6	100	92.561	Pteropus_vampyrus
ENSSSCG00000029119	PRPF6	98	74.394	ENSPNYG00000001939	prpf6	97	79.895	Pundamilia_nyererei
ENSSSCG00000029119	PRPF6	100	92.404	ENSPNAG00000015606	prpf6	96	92.804	Pygocentrus_nattereri
ENSSSCG00000029119	PRPF6	100	98.186	ENSRNOG00000051498	Prpf6	100	98.300	Rattus_norvegicus
ENSSSCG00000029119	PRPF6	99	97.924	ENSRBIG00000043613	PRPF6	100	97.024	Rhinopithecus_bieti
ENSSSCG00000029119	PRPF6	99	97.924	ENSRROG00000040969	PRPF6	99	97.924	Rhinopithecus_roxellana
ENSSSCG00000029119	PRPF6	99	93.426	ENSSBOG00000020632	PRPF6	95	95.044	Saimiri_boliviensis_boliviensis
ENSSSCG00000029119	PRPF6	100	97.846	ENSSHAG00000016810	PRPF6	100	97.981	Sarcophilus_harrisii
ENSSSCG00000029119	PRPF6	100	93.651	ENSSFOG00015020859	prpf6	100	94.415	Scleropages_formosus
ENSSSCG00000029119	PRPF6	100	90.816	ENSSMAG00000008112	prpf6	97	90.262	Scophthalmus_maximus
ENSSSCG00000029119	PRPF6	98	92.148	ENSSDUG00000016142	prpf6	98	90.938	Seriola_dumerili
ENSSSCG00000029119	PRPF6	98	92.148	ENSSLDG00000025283	prpf6	100	89.054	Seriola_lalandi_dorsalis
ENSSSCG00000029119	PRPF6	100	96.032	ENSSPUG00000018260	PRPF6	100	96.032	Sphenodon_punctatus
ENSSSCG00000029119	PRPF6	98	92.148	ENSSPAG00000015850	prpf6	97	91.309	Stegastes_partitus
ENSSSCG00000029119	PRPF6	100	97.392	ENSTGUG00000007221	PRPF6	100	97.458	Taeniopygia_guttata
ENSSSCG00000029119	PRPF6	100	90.930	ENSTRUG00000002920	prpf6	97	90.785	Takifugu_rubripes
ENSSSCG00000029119	PRPF6	100	84.216	ENSTNIG00000017873	prpf6	100	85.518	Tetraodon_nigroviridis
ENSSSCG00000029119	PRPF6	90	97.945	ENSTBEG00000005348	PRPF6	85	98.343	Tupaia_belangeri
ENSSSCG00000029119	PRPF6	100	98.299	ENSTTRG00000013068	PRPF6	100	98.406	Tursiops_truncatus
ENSSSCG00000029119	PRPF6	100	97.506	ENSUMAG00000021631	PRPF6	98	97.391	Ursus_maritimus
ENSSSCG00000029119	PRPF6	100	98.753	ENSVVUG00000014948	PRPF6	100	98.831	Vulpes_vulpes
ENSSSCG00000029119	PRPF6	100	94.331	ENSXETG00000012054	prpf6	99	93.776	Xenopus_tropicalis
ENSSSCG00000029119	PRPF6	98	92.841	ENSXCOG00000008082	prpf6	97	91.937	Xiphophorus_couchianus
ENSSSCG00000029119	PRPF6	98	92.841	ENSXMAG00000015581	prpf6	97	91.937	Xiphophorus_maculatus