EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000029127 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 5070 bases
Position: chr13:172600739-172605808
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000032425	SMN	PF06003.12	5.6e-59	1	2
ENSSSCP00000032425	SMN	PF06003.12	5.6e-59	2	2
ENSSSCP00000046418	SMN	PF06003.12	5.6e-59	1	2
ENSSSCP00000046418	SMN	PF06003.12	5.6e-59	2	2
ENSSSCP00000027198	SMN	PF06003.12	1e-57	1	2
ENSSSCP00000027198	SMN	PF06003.12	1e-57	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000030798	-	753	-	ENSSSCP00000027198	250 (aa)	-	I3LSV5
ENSSSCT00000064301	-	639	-	ENSSSCP00000046418	212 (aa)	-	A0A286ZLJ2
ENSSSCT00000039370	-	639	-	ENSSSCP00000032425	212 (aa)	-	A0A286ZLJ2

Gene Model

Click here to download ENSSSCG00000029127's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000029127's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000029127	-	67	71.676	ENSSSCG00000033865	-	92	72.892
ENSSSCG00000029127	-	94	73.050	ENSSSCG00000016970	-	96	73.050

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000029127	-	96	66.532	ENSG00000172062	SMN1	97	66.142	Homo_sapiens
ENSSSCG00000029127	-	96	66.532	ENSG00000205571	SMN2	87	90.000	Homo_sapiens
ENSSSCG00000029127	-	75	68.750	ENSAPOG00000011324	smn1	94	39.630	Acanthochromis_polyacanthus
ENSSSCG00000029127	-	94	68.683	ENSAMEG00000003316	-	93	68.683	Ailuropoda_melanoleuca
ENSSSCG00000029127	-	75	68.750	ENSAOCG00000024444	smn1	94	40.977	Amphiprion_ocellaris
ENSSSCG00000029127	-	75	68.750	ENSAPEG00000016504	smn1	94	40.741	Amphiprion_percula
ENSSSCG00000029127	-	91	47.037	ENSACAG00000010017	-	95	43.333	Anolis_carolinensis
ENSSSCG00000029127	-	96	63.322	ENSANAG00000032133	-	95	65.000	Aotus_nancymaae
ENSSSCG00000029127	-	70	71.875	ENSACLG00000007308	smn1	89	40.075	Astatotilapia_calliptera
ENSSSCG00000029127	-	71	62.500	ENSAMXG00000013884	smn1	97	40.000	Astyanax_mexicanus
ENSSSCG00000029127	-	94	64.184	ENSBTAG00000005743	SMN2	98	62.411	Bos_taurus
ENSSSCG00000029127	-	96	65.323	ENSCJAG00000016290	-	97	64.961	Callithrix_jacchus
ENSSSCG00000029127	-	94	67.972	ENSCAFG00000007812	SMN	97	67.972	Canis_familiaris
ENSSSCG00000029127	-	94	67.857	ENSCAFG00020019229	-	90	67.857	Canis_lupus_dingo
ENSSSCG00000029127	-	94	64.085	ENSCHIG00000015559	-	96	62.676	Capra_hircus
ENSSSCG00000029127	-	99	66.667	ENSTSYG00000012058	-	99	67.059	Carlito_syrichta
ENSSSCG00000029127	-	70	48.214	ENSCAPG00000011021	-	85	47.368	Cavia_aperea
ENSSSCG00000029127	-	97	59.516	ENSCPOG00000036973	-	96	59.220	Cavia_porcellus
ENSSSCG00000029127	-	97	59.524	ENSCPOG00000012328	-	97	59.233	Cavia_porcellus
ENSSSCG00000029127	-	96	64.919	ENSCCAG00000018127	-	97	64.567	Cebus_capucinus
ENSSSCG00000029127	-	96	66.532	ENSCATG00000037002	-	97	66.142	Cercocebus_atys
ENSSSCG00000029127	-	99	59.160	ENSCLAG00000000284	-	98	59.160	Chinchilla_lanigera
ENSSSCG00000029127	-	94	66.429	ENSCSAG00000015688	-	95	66.429	Chlorocebus_sabaeus
ENSSSCG00000029127	-	82	58.730	ENSCHOG00000007346	-	77	88.462	Choloepus_hoffmanni
ENSSSCG00000029127	-	96	47.368	ENSCPBG00000010968	-	99	46.183	Chrysemys_picta_bellii
ENSSSCG00000029127	-	96	65.726	ENSCANG00000038242	-	97	65.354	Colobus_angolensis_palliatus
ENSSSCG00000029127	-	99	61.024	ENSCANG00000033324	-	95	63.846	Colobus_angolensis_palliatus
ENSSSCG00000029127	-	98	51.087	ENSCGRG00001016998	-	96	46.415	Cricetulus_griseus_chok1gshd
ENSSSCG00000029127	-	96	63.380	ENSCGRG00001017959	-	97	62.500	Cricetulus_griseus_chok1gshd
ENSSSCG00000029127	-	96	63.380	ENSCGRG00000007698	Smn1	97	62.500	Cricetulus_griseus_crigri
ENSSSCG00000029127	-	89	37.729	ENSCSEG00000015227	smn1	56	58.537	Cynoglossus_semilaevis
ENSSSCG00000029127	-	67	68.750	ENSCVAG00000007498	smn1	95	39.781	Cyprinodon_variegatus
ENSSSCG00000029127	-	72	69.444	ENSDARG00000018494	smn1	96	41.912	Danio_rerio
ENSSSCG00000029127	-	80	61.194	ENSDNOG00000045949	-	86	54.922	Dasypus_novemcinctus
ENSSSCG00000029127	-	78	61.250	ENSDNOG00000007283	-	100	62.917	Dasypus_novemcinctus
ENSSSCG00000029127	-	94	58.214	ENSDORG00000007082	Smn1	95	58.633	Dipodomys_ordii
ENSSSCG00000029127	-	76	54.455	ENSETEG00000001406	-	89	57.143	Echinops_telfairi
ENSSSCG00000029127	-	86	35.567	ENSEBUG00000011902	smn1	90	34.694	Eptatretus_burgeri
ENSSSCG00000029127	-	86	65.613	ENSEASG00005018000	-	90	66.939	Equus_asinus_asinus
ENSSSCG00000029127	-	94	67.376	ENSECAG00000015215	-	97	67.376	Equus_caballus
ENSSSCG00000029127	-	82	61.847	ENSEEUG00000015777	-	100	61.847	Erinaceus_europaeus
ENSSSCG00000029127	-	91	42.966	ENSELUG00000018067	smn1	94	41.887	Esox_lucius
ENSSSCG00000029127	-	99	69.412	ENSFCAG00000028292	SMN	98	69.412	Felis_catus
ENSSSCG00000029127	-	87	49.597	ENSFALG00000012320	-	91	47.154	Ficedula_albicollis
ENSSSCG00000029127	-	97	60.137	ENSFDAG00000017683	-	96	62.456	Fukomys_damarensis
ENSSSCG00000029127	-	67	68.750	ENSFHEG00000018508	smn1	96	39.080	Fundulus_heteroclitus
ENSSSCG00000029127	-	71	68.966	ENSGMOG00000017279	smn1	74	50.000	Gadus_morhua
ENSSSCG00000029127	-	91	48.235	ENSGALG00000002430	SMN	95	45.385	Gallus_gallus
ENSSSCG00000029127	-	67	68.750	ENSGAFG00000009501	smn1	93	42.276	Gambusia_affinis
ENSSSCG00000029127	-	91	42.023	ENSGACG00000010584	smn1	58	60.833	Gasterosteus_aculeatus
ENSSSCG00000029127	-	96	46.786	ENSGAGG00000011374	-	97	47.985	Gopherus_agassizii
ENSSSCG00000029127	-	94	31.319	ENSGAGG00000013639	-	94	30.667	Gopherus_agassizii
ENSSSCG00000029127	-	96	56.967	ENSGGOG00000026704	-	86	66.667	Gorilla_gorilla
ENSSSCG00000029127	-	91	65.546	ENSGGOG00000003872	-	98	65.145	Gorilla_gorilla
ENSSSCG00000029127	-	74	71.875	ENSHBUG00000013987	smn1	94	40.977	Haplochromis_burtoni
ENSSSCG00000029127	-	98	60.764	ENSHGLG00000001905	-	98	62.230	Heterocephalus_glaber_female
ENSSSCG00000029127	-	98	61.775	ENSHGLG00000001018	-	96	60.563	Heterocephalus_glaber_female
ENSSSCG00000029127	-	92	60.000	ENSHGLG00100018676	-	97	61.509	Heterocephalus_glaber_male
ENSSSCG00000029127	-	98	61.775	ENSHGLG00100011252	-	96	60.563	Heterocephalus_glaber_male
ENSSSCG00000029127	-	74	58.475	ENSHCOG00000017136	smn1	86	40.684	Hippocampus_comes
ENSSSCG00000029127	-	91	41.392	ENSIPUG00000012580	smn1	86	41.758	Ictalurus_punctatus
ENSSSCG00000029127	-	88	65.779	ENSSTOG00000012288	-	96	63.774	Ictidomys_tridecemlineatus
ENSSSCG00000029127	-	62	45.402	ENSJJAG00000014853	-	89	48.571	Jaculus_jaculus
ENSSSCG00000029127	-	67	68.750	ENSKMAG00000007239	smn1	96	39.179	Kryptolebias_marmoratus
ENSSSCG00000029127	-	68	67.647	ENSLBEG00000022550	smn1	57	59.167	Labrus_bergylta
ENSSSCG00000029127	-	89	41.393	ENSLOCG00000011339	smn1	93	42.437	Lepisosteus_oculatus
ENSSSCG00000029127	-	96	64.931	ENSLAFG00000003425	-	93	65.493	Loxodonta_africana
ENSSSCG00000029127	-	96	66.532	ENSMFAG00000031523	SMN1	97	66.142	Macaca_fascicularis
ENSSSCG00000029127	-	94	63.571	ENSMFAG00000008812	-	95	64.029	Macaca_fascicularis
ENSSSCG00000029127	-	96	66.532	ENSMMUG00000020214	SMN1	97	66.142	Macaca_mulatta
ENSSSCG00000029127	-	94	62.857	ENSMMUG00000030594	-	95	63.309	Macaca_mulatta
ENSSSCG00000029127	-	96	66.129	ENSMNEG00000035094	-	97	65.748	Macaca_nemestrina
ENSSSCG00000029127	-	70	53.023	ENSMNEG00000036423	-	80	53.000	Macaca_nemestrina
ENSSSCG00000029127	-	96	66.129	ENSMLEG00000041902	-	97	65.748	Mandrillus_leucophaeus
ENSSSCG00000029127	-	75	67.647	ENSMAMG00000011034	smn1	57	58.333	Mastacembelus_armatus
ENSSSCG00000029127	-	74	71.875	ENSMZEG00005013634	smn1	58	62.500	Maylandia_zebra
ENSSSCG00000029127	-	61	38.462	ENSMGAG00000008889	-	95	34.759	Meleagris_gallopavo
ENSSSCG00000029127	-	100	58.042	ENSMAUG00000010262	Smn1	97	60.993	Mesocricetus_auratus
ENSSSCG00000029127	-	94	62.977	ENSMICG00000034708	-	96	62.977	Microcebus_murinus
ENSSSCG00000029127	-	96	62.324	ENSMOCG00000017833	Smn1	97	62.143	Microtus_ochrogaster
ENSSSCG00000029127	-	91	38.077	ENSMMOG00000005504	smn1	96	38.462	Mola_mola
ENSSSCG00000029127	-	96	54.643	ENSMODG00000001436	-	95	54.015	Monodelphis_domestica
ENSSSCG00000029127	-	67	70.968	ENSMALG00000008025	smn1	57	60.833	Monopterus_albus
ENSSSCG00000029127	-	97	62.153	MGP_CAROLIEiJ_G0018836	Smn1	97	60.714	Mus_caroli
ENSSSCG00000029127	-	97	62.153	ENSMUSG00000021645	Smn1	97	60.714	Mus_musculus
ENSSSCG00000029127	-	97	60.839	MGP_PahariEiJ_G0015911	Smn1	97	59.712	Mus_pahari
ENSSSCG00000029127	-	97	61.458	MGP_SPRETEiJ_G0019718	Smn1	97	60.000	Mus_spretus
ENSSSCG00000029127	-	90	67.897	ENSMPUG00000014470	-	95	67.790	Mustela_putorius_furo
ENSSSCG00000029127	-	94	66.782	ENSMLUG00000010603	-	92	67.247	Myotis_lucifugus
ENSSSCG00000029127	-	96	61.972	ENSNGAG00000019833	Smn1	97	62.724	Nannospalax_galili
ENSSSCG00000029127	-	74	71.875	ENSNBRG00000023000	smn1	94	43.494	Neolamprologus_brichardi
ENSSSCG00000029127	-	99	66.142	ENSNLEG00000004454	-	97	66.142	Nomascus_leucogenys
ENSSSCG00000029127	-	72	47.727	ENSMEUG00000011393	-	99	47.727	Notamacropus_eugenii
ENSSSCG00000029127	-	82	58.498	ENSOPRG00000002015	-	100	58.498	Ochotona_princeps
ENSSSCG00000029127	-	91	60.584	ENSODEG00000015976	-	94	59.551	Octodon_degus
ENSSSCG00000029127	-	75	71.875	ENSONIG00000011799	smn1	95	42.435	Oreochromis_niloticus
ENSSSCG00000029127	-	90	51.493	ENSOANG00000001626	-	96	49.438	Ornithorhynchus_anatinus
ENSSSCG00000029127	-	96	65.480	ENSOCUG00000026649	-	96	64.260	Oryctolagus_cuniculus
ENSSSCG00000029127	-	96	57.586	ENSOCUG00000025183	-	96	57.951	Oryctolagus_cuniculus
ENSSSCG00000029127	-	97	67.025	ENSOCUG00000017097	-	96	67.033	Oryctolagus_cuniculus
ENSSSCG00000029127	-	67	68.750	ENSORLG00000010552	smn1	57	59.167	Oryzias_latipes
ENSSSCG00000029127	-	89	44.841	ENSORLG00020007936	smn1	93	45.020	Oryzias_latipes_hni
ENSSSCG00000029127	-	67	68.750	ENSORLG00015022425	smn1	57	58.333	Oryzias_latipes_hsok
ENSSSCG00000029127	-	67	68.750	ENSOMEG00000007824	smn1	57	61.667	Oryzias_melastigma
ENSSSCG00000029127	-	88	56.827	ENSOGAG00000031414	-	94	57.196	Otolemur_garnettii
ENSSSCG00000029127	-	92	61.455	ENSOARG00000005425	-	97	61.423	Ovis_aries
ENSSSCG00000029127	-	96	66.532	ENSPPAG00000036640	-	97	66.142	Pan_paniscus
ENSSSCG00000029127	-	99	69.412	ENSPPRG00000005575	-	98	69.412	Panthera_pardus
ENSSSCG00000029127	-	99	69.412	ENSPTIG00000007745	-	98	69.412	Panthera_tigris_altaica
ENSSSCG00000029127	-	96	66.532	ENSPTRG00000016955	-	97	66.142	Pan_troglodytes
ENSSSCG00000029127	-	92	62.455	ENSPANG00000000253	-	94	63.953	Papio_anubis
ENSSSCG00000029127	-	99	66.142	ENSPANG00000013601	-	97	66.142	Papio_anubis
ENSSSCG00000029127	-	90	42.678	ENSPKIG00000011096	smn1	93	39.919	Paramormyrops_kingsleyae
ENSSSCG00000029127	-	90	47.653	ENSPSIG00000014787	-	90	45.487	Pelodiscus_sinensis
ENSSSCG00000029127	-	85	66.667	ENSPMGG00000012285	smn1	94	37.405	Periophthalmus_magnuspinnatus
ENSSSCG00000029127	-	50	41.803	ENSPMAG00000000277	-	98	41.803	Petromyzon_marinus
ENSSSCG00000029127	-	87	33.208	ENSPMAG00000005004	smn1	59	56.098	Petromyzon_marinus
ENSSSCG00000029127	-	96	54.122	ENSPCIG00000025764	-	97	54.380	Phascolarctos_cinereus
ENSSSCG00000029127	-	67	68.750	ENSPFOG00000007786	smn1	57	62.500	Poecilia_formosa
ENSSSCG00000029127	-	91	45.679	ENSPLAG00000012071	smn1	75	62.500	Poecilia_latipinna
ENSSSCG00000029127	-	91	45.679	ENSPMEG00000017085	smn1	75	62.500	Poecilia_mexicana
ENSSSCG00000029127	-	91	44.813	ENSPREG00000005824	smn1	93	42.683	Poecilia_reticulata
ENSSSCG00000029127	-	88	64.286	ENSPPYG00000015533	-	96	64.286	Pongo_abelii
ENSSSCG00000029127	-	81	51.020	ENSPPYG00000019189	-	99	50.000	Pongo_abelii
ENSSSCG00000029127	-	88	60.075	ENSPCAG00000004187	-	100	58.955	Procavia_capensis
ENSSSCG00000029127	-	87	56.332	ENSPCOG00000022307	-	100	57.018	Propithecus_coquereli
ENSSSCG00000029127	-	94	70.000	ENSPVAG00000005977	-	96	69.751	Pteropus_vampyrus
ENSSSCG00000029127	-	74	71.875	ENSPNYG00000014148	smn1	94	43.494	Pundamilia_nyererei
ENSSSCG00000029127	-	75	69.444	ENSPNAG00000014007	smn1	83	41.445	Pygocentrus_nattereri
ENSSSCG00000029127	-	97	62.153	ENSRNOG00000018067	Smn1	97	60.357	Rattus_norvegicus
ENSSSCG00000029127	-	92	66.797	ENSRBIG00000036775	-	91	65.462	Rhinopithecus_bieti
ENSSSCG00000029127	-	96	65.726	ENSRBIG00000037052	-	97	65.354	Rhinopithecus_bieti
ENSSSCG00000029127	-	96	65.726	ENSRROG00000039399	-	97	65.354	Rhinopithecus_roxellana
ENSSSCG00000029127	-	96	66.667	ENSRROG00000031088	-	95	65.370	Rhinopithecus_roxellana
ENSSSCG00000029127	-	96	64.919	ENSSBOG00000011665	-	97	64.567	Saimiri_boliviensis_boliviensis
ENSSSCG00000029127	-	80	56.746	ENSSBOG00000020112	-	88	57.540	Saimiri_boliviensis_boliviensis
ENSSSCG00000029127	-	96	55.000	ENSSHAG00000001499	-	97	53.640	Sarcophilus_harrisii
ENSSSCG00000029127	-	91	41.250	ENSSFOG00015015507	smn1	94	41.699	Scleropages_formosus
ENSSSCG00000029127	-	67	71.875	ENSSMAG00000007922	smn1	55	69.444	Scophthalmus_maximus
ENSSSCG00000029127	-	74	68.750	ENSSDUG00000018533	smn1	57	59.167	Seriola_dumerili
ENSSSCG00000029127	-	74	68.750	ENSSLDG00000021135	smn1	57	60.000	Seriola_lalandi_dorsalis
ENSSSCG00000029127	-	88	49.807	ENSSPUG00000000373	-	92	50.388	Sphenodon_punctatus
ENSSSCG00000029127	-	74	65.625	ENSSPAG00000004345	smn1	94	43.145	Stegastes_partitus
ENSSSCG00000029127	-	86	45.489	ENSTGUG00000001548	-	96	44.403	Taeniopygia_guttata
ENSSSCG00000029127	-	69	62.500	ENSTRUG00000000736	smn	56	58.824	Takifugu_rubripes
ENSSSCG00000029127	-	70	61.111	ENSTNIG00000009892	smn1	57	57.143	Tetraodon_nigroviridis
ENSSSCG00000029127	-	67	61.957	ENSTBEG00000002399	-	89	65.761	Tupaia_belangeri
ENSSSCG00000029127	-	94	65.827	ENSTTRG00000005080	-	96	65.827	Tursiops_truncatus
ENSSSCG00000029127	-	67	67.391	ENSUAMG00000024947	-	67	71.196	Ursus_americanus
ENSSSCG00000029127	-	94	69.039	ENSUMAG00000007842	-	72	69.039	Ursus_maritimus
ENSSSCG00000029127	-	74	92.593	ENSVPAG00000009887	-	96	57.736	Vicugna_pacos
ENSSSCG00000029127	-	94	67.972	ENSVVUG00000006934	-	97	67.972	Vulpes_vulpes
ENSSSCG00000029127	-	90	44.689	ENSXETG00000018189	smn2	96	41.608	Xenopus_tropicalis
ENSSSCG00000029127	-	92	45.082	ENSXMAG00000001521	smn1	95	42.023	Xiphophorus_maculatus