EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000030478 (Gene tree)
Gene ID: 100519660
Gene Symbol: -
Alias: -
Full Name: mitochondrial ribosomal protein L42
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 52801 bases
Position: chr5:89608869-89661669
Accession: 100519660
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000027922	MRP-S32	PF10210.9	2.4e-40	1	1
ENSSSCP00000058606	MRP-S32	PF10210.9	2.8e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000028871	-	524	-	ENSSSCP00000027922	134 (aa)	-	I3LUX1
ENSSSCT00000064682	-	2096	XM_005664266	ENSSSCP00000058606	142 (aa)	XP_005664323	A0A287BQA1

Gene Model

Click here to download ENSSSCG00000030478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000030478's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000030478	-	81	70.175	ENSSSCG00000035613	-	80	86.047
ENSSSCG00000030478	-	99	64.539	ENSSSCG00000036897	-	99	64.539
ENSSSCG00000030478	-	74	58.586	ENSSSCG00000034693	-	84	58.586

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000030478	-	100	87.324	ENSG00000198015	MRPL42	100	89.062	Homo_sapiens
ENSSSCG00000030478	-	78	93.333	ENSAMEG00000009832	MRPL42	83	93.333	Ailuropoda_melanoleuca
ENSSSCG00000030478	-	72	65.625	ENSACIG00000017826	mrpl42	69	65.625	Amphilophus_citrinellus
ENSSSCG00000030478	-	97	66.187	ENSAPLG00000015057	MRPL42	97	66.187	Anas_platyrhynchos
ENSSSCG00000030478	-	71	82.178	ENSANAG00000036083	-	85	82.178	Aotus_nancymaae
ENSSSCG00000030478	-	90	82.031	ENSANAG00000000692	-	91	82.031	Aotus_nancymaae
ENSSSCG00000030478	-	100	83.099	ENSANAG00000036935	-	100	83.099	Aotus_nancymaae
ENSSSCG00000030478	-	99	73.103	ENSANAG00000033101	-	96	73.103	Aotus_nancymaae
ENSSSCG00000030478	-	100	92.254	ENSBTAG00000002708	MRPL42	100	92.254	Bos_taurus
ENSSSCG00000030478	-	79	78.302	ENSBTAG00000052971	-	97	78.302	Bos_taurus
ENSSSCG00000030478	-	100	87.324	ENSCJAG00000046971	MRPL42	100	87.324	Callithrix_jacchus
ENSSSCG00000030478	-	54	76.190	ENSCAFG00000030257	-	93	76.190	Canis_familiaris
ENSSSCG00000030478	-	72	92.784	ENSCAFG00020022967	-	85	92.784	Canis_lupus_dingo
ENSSSCG00000030478	-	51	87.671	ENSCAFG00020016271	-	97	87.671	Canis_lupus_dingo
ENSSSCG00000030478	-	90	93.750	ENSCHIG00000014921	MRPL42	100	93.750	Capra_hircus
ENSSSCG00000030478	-	100	88.028	ENSTSYG00000006370	-	100	88.028	Carlito_syrichta
ENSSSCG00000030478	-	81	81.651	ENSTSYG00000032810	-	100	81.651	Carlito_syrichta
ENSSSCG00000030478	-	92	83.969	ENSTSYG00000036466	-	90	83.969	Carlito_syrichta
ENSSSCG00000030478	-	93	84.000	ENSCAPG00000016985	-	93	84.000	Cavia_aperea
ENSSSCG00000030478	-	100	69.718	ENSCAPG00000015105	-	100	69.718	Cavia_aperea
ENSSSCG00000030478	-	100	70.423	ENSCPOG00000008943	-	100	70.423	Cavia_porcellus
ENSSSCG00000030478	-	96	86.029	ENSCPOG00000030015	-	98	85.106	Cavia_porcellus
ENSSSCG00000030478	-	90	67.969	ENSCCAG00000029290	-	83	67.969	Cebus_capucinus
ENSSSCG00000030478	-	89	83.465	ENSCCAG00000032203	-	77	83.465	Cebus_capucinus
ENSSSCG00000030478	-	100	87.324	ENSCCAG00000031179	-	100	87.324	Cebus_capucinus
ENSSSCG00000030478	-	100	88.028	ENSCATG00000037616	MRPL42	100	88.028	Cercocebus_atys
ENSSSCG00000030478	-	100	87.324	ENSCLAG00000005421	MRPL42	100	87.324	Chinchilla_lanigera
ENSSSCG00000030478	-	100	89.437	ENSCSAG00000003706	MRPL42	100	89.437	Chlorocebus_sabaeus
ENSSSCG00000030478	-	88	48.305	ENSCHOG00000007010	-	100	48.305	Choloepus_hoffmanni
ENSSSCG00000030478	-	100	65.541	ENSCPBG00000001581	MRPL42	100	65.541	Chrysemys_picta_bellii
ENSSSCG00000030478	-	100	88.732	ENSCANG00000033457	MRPL42	100	88.732	Colobus_angolensis_palliatus
ENSSSCG00000030478	-	98	64.748	ENSCGRG00001003813	-	98	64.748	Cricetulus_griseus_chok1gshd
ENSSSCG00000030478	-	100	77.465	ENSCGRG00001012694	-	99	77.465	Cricetulus_griseus_chok1gshd
ENSSSCG00000030478	-	98	79.137	ENSCGRG00000003801	Mrpl42	99	79.137	Cricetulus_griseus_crigri
ENSSSCG00000030478	-	94	80.597	ENSDNOG00000049701	-	95	80.597	Dasypus_novemcinctus
ENSSSCG00000030478	-	100	82.394	ENSDNOG00000032710	-	100	82.394	Dasypus_novemcinctus
ENSSSCG00000030478	-	98	86.331	ENSDORG00000015571	Mrpl42	99	86.331	Dipodomys_ordii
ENSSSCG00000030478	-	86	61.207	ENSETEG00000014745	-	92	58.871	Echinops_telfairi
ENSSSCG00000030478	-	100	93.662	ENSEASG00005019361	MRPL42	100	93.662	Equus_asinus_asinus
ENSSSCG00000030478	-	100	92.254	ENSECAG00000026888	MRPL42	100	92.254	Equus_caballus
ENSSSCG00000030478	-	89	70.866	ENSFCAG00000036356	-	79	70.866	Felis_catus
ENSSSCG00000030478	-	100	90.141	ENSFCAG00000037907	-	100	90.141	Felis_catus
ENSSSCG00000030478	-	90	84.167	ENSFCAG00000040567	-	100	85.484	Felis_catus
ENSSSCG00000030478	-	99	67.376	ENSFALG00000010717	MRPL42	95	67.376	Ficedula_albicollis
ENSSSCG00000030478	-	98	85.612	ENSFDAG00000018129	MRPL42	99	85.612	Fukomys_damarensis
ENSSSCG00000030478	-	84	74.336	ENSGALG00000011293	MRPL42	84	69.919	Gallus_gallus
ENSSSCG00000030478	-	100	67.568	ENSGAGG00000010125	MRPL42	100	67.568	Gopherus_agassizii
ENSSSCG00000030478	-	100	87.324	ENSGGOG00000022760	MRPL42	100	87.324	Gorilla_gorilla
ENSSSCG00000030478	-	87	84.553	ENSHGLG00000008248	-	100	84.553	Heterocephalus_glaber_female
ENSSSCG00000030478	-	86	89.344	ENSHGLG00000007399	-	93	88.889	Heterocephalus_glaber_female
ENSSSCG00000030478	-	87	89.516	ENSHGLG00100018317	-	87	89.516	Heterocephalus_glaber_male
ENSSSCG00000030478	-	85	84.298	ENSHGLG00100013257	-	98	84.298	Heterocephalus_glaber_male
ENSSSCG00000030478	-	100	83.099	ENSSTOG00000026544	MRPL42	100	83.099	Ictidomys_tridecemlineatus
ENSSSCG00000030478	-	84	72.321	ENSLACG00000006919	MRPL42	100	60.284	Latimeria_chalumnae
ENSSSCG00000030478	-	89	87.395	ENSLAFG00000013779	MRPL42	85	87.395	Loxodonta_africana
ENSSSCG00000030478	-	100	88.028	ENSMFAG00000032330	MRPL42	100	88.028	Macaca_fascicularis
ENSSSCG00000030478	-	100	85.915	ENSMMUG00000016805	MRPL42	100	85.915	Macaca_mulatta
ENSSSCG00000030478	-	100	88.028	ENSMNEG00000028853	MRPL42	100	88.028	Macaca_nemestrina
ENSSSCG00000030478	-	100	88.732	ENSMLEG00000038104	MRPL42	100	88.732	Mandrillus_leucophaeus
ENSSSCG00000030478	-	84	74.336	ENSMGAG00000011346	MRPL42	84	69.919	Meleagris_gallopavo
ENSSSCG00000030478	-	97	74.638	ENSMAUG00000010057	-	98	74.638	Mesocricetus_auratus
ENSSSCG00000030478	-	98	64.748	ENSMAUG00000018130	-	98	64.748	Mesocricetus_auratus
ENSSSCG00000030478	-	100	88.732	ENSMICG00000032596	-	100	88.732	Microcebus_murinus
ENSSSCG00000030478	-	72	85.417	ENSMICG00000045594	-	97	85.417	Microcebus_murinus
ENSSSCG00000030478	-	72	85.417	ENSMICG00000028094	-	84	92.500	Microcebus_murinus
ENSSSCG00000030478	-	88	88.800	ENSMICG00000036541	-	99	84.906	Microcebus_murinus
ENSSSCG00000030478	-	93	87.879	ENSMICG00000035189	-	92	87.879	Microcebus_murinus
ENSSSCG00000030478	-	98	76.978	ENSMOCG00000004616	-	99	76.978	Microtus_ochrogaster
ENSSSCG00000030478	-	98	81.295	ENSMOCG00000013541	-	99	81.295	Microtus_ochrogaster
ENSSSCG00000030478	-	98	77.143	MGP_CAROLIEiJ_G0015750	Mrpl42	99	77.143	Mus_caroli
ENSSSCG00000030478	-	98	76.429	ENSMUSG00000062981	Mrpl42	99	76.429	Mus_musculus
ENSSSCG00000030478	-	100	85.211	ENSMLUG00000029623	-	100	85.211	Myotis_lucifugus
ENSSSCG00000030478	-	99	85.714	ENSMLUG00000025058	-	99	85.714	Myotis_lucifugus
ENSSSCG00000030478	-	100	83.099	ENSMLUG00000023702	-	100	83.099	Myotis_lucifugus
ENSSSCG00000030478	-	90	86.719	ENSNGAG00000000717	Mrpl42	100	86.719	Nannospalax_galili
ENSSSCG00000030478	-	100	87.324	ENSNLEG00000005699	MRPL42	100	87.324	Nomascus_leucogenys
ENSSSCG00000030478	-	85	44.737	ENSMEUG00000008043	-	100	44.068	Notamacropus_eugenii
ENSSSCG00000030478	-	100	78.169	ENSOPRG00000010967	MRPL42	100	78.169	Ochotona_princeps
ENSSSCG00000030478	-	84	90.351	ENSODEG00000008681	-	96	90.351	Octodon_degus
ENSSSCG00000030478	-	100	78.322	ENSODEG00000012689	-	100	79.720	Octodon_degus
ENSSSCG00000030478	-	99	74.648	ENSODEG00000016452	-	99	76.056	Octodon_degus
ENSSSCG00000030478	-	100	83.803	ENSOCUG00000010928	MRPL42	100	83.803	Oryctolagus_cuniculus
ENSSSCG00000030478	-	100	80.282	ENSOGAG00000034004	-	100	80.282	Otolemur_garnettii
ENSSSCG00000030478	-	100	79.577	ENSOGAG00000027617	-	100	79.577	Otolemur_garnettii
ENSSSCG00000030478	-	100	78.873	ENSOGAG00000026395	-	100	78.873	Otolemur_garnettii
ENSSSCG00000030478	-	100	87.324	ENSOGAG00000025600	-	100	87.324	Otolemur_garnettii
ENSSSCG00000030478	-	100	85.915	ENSOGAG00000025686	-	100	85.915	Otolemur_garnettii
ENSSSCG00000030478	-	98	78.417	ENSOGAG00000030438	-	99	78.417	Otolemur_garnettii
ENSSSCG00000030478	-	100	78.169	ENSOGAG00000024156	-	100	78.169	Otolemur_garnettii
ENSSSCG00000030478	-	90	94.531	ENSOARG00000015849	MRPL42	100	94.531	Ovis_aries
ENSSSCG00000030478	-	100	85.915	ENSPPAG00000038254	MRPL42	100	85.915	Pan_paniscus
ENSSSCG00000030478	-	100	88.732	ENSPPRG00000015755	-	100	88.732	Panthera_pardus
ENSSSCG00000030478	-	89	70.079	ENSPPRG00000006533	-	79	70.079	Panthera_pardus
ENSSSCG00000030478	-	100	90.141	ENSPPRG00000013218	-	100	90.141	Panthera_pardus
ENSSSCG00000030478	-	90	84.167	ENSPPRG00000017935	-	100	85.484	Panthera_pardus
ENSSSCG00000030478	-	100	90.141	ENSPTIG00000019099	-	100	90.141	Panthera_tigris_altaica
ENSSSCG00000030478	-	100	88.732	ENSPTIG00000009394	-	100	88.732	Panthera_tigris_altaica
ENSSSCG00000030478	-	86	85.217	ENSPTIG00000009717	-	93	85.217	Panthera_tigris_altaica
ENSSSCG00000030478	-	100	85.915	ENSPTRG00000022791	MRPL42	100	85.915	Pan_troglodytes
ENSSSCG00000030478	-	100	77.551	ENSPANG00000030179	MRPL42	100	77.551	Papio_anubis
ENSSSCG00000030478	-	100	64.189	ENSPSIG00000010745	MRPL42	100	64.189	Pelodiscus_sinensis
ENSSSCG00000030478	-	98	79.137	ENSPEMG00000020562	-	99	79.137	Peromyscus_maniculatus_bairdii
ENSSSCG00000030478	-	100	66.892	ENSPCIG00000001472	-	77	66.892	Phascolarctos_cinereus
ENSSSCG00000030478	-	100	86.620	ENSPPYG00000004833	MRPL42	100	86.620	Pongo_abelii
ENSSSCG00000030478	-	85	88.596	ENSPCAG00000003791	MRPL42	97	88.596	Procavia_capensis
ENSSSCG00000030478	-	100	78.169	ENSPCOG00000025008	-	100	78.169	Propithecus_coquereli
ENSSSCG00000030478	-	100	69.718	ENSPCOG00000018896	-	100	69.718	Propithecus_coquereli
ENSSSCG00000030478	-	95	85.926	ENSPCOG00000014986	-	97	85.926	Propithecus_coquereli
ENSSSCG00000030478	-	61	70.732	ENSPVAG00000013736	-	69	70.732	Pteropus_vampyrus
ENSSSCG00000030478	-	98	72.143	ENSRNOG00000021867	AABR07009508.1	98	72.143	Rattus_norvegicus
ENSSSCG00000030478	-	98	78.417	ENSRNOG00000042740	Mrpl42	99	78.417	Rattus_norvegicus
ENSSSCG00000030478	-	90	67.188	ENSRBIG00000044361	-	79	67.188	Rhinopithecus_bieti
ENSSSCG00000030478	-	100	86.620	ENSRBIG00000011046	-	100	86.620	Rhinopithecus_bieti
ENSSSCG00000030478	-	100	87.324	ENSRROG00000033949	MRPL42	100	87.324	Rhinopithecus_roxellana
ENSSSCG00000030478	-	70	79.787	ENSSBOG00000027483	-	82	79.787	Saimiri_boliviensis_boliviensis
ENSSSCG00000030478	-	100	83.803	ENSSBOG00000009656	-	100	83.803	Saimiri_boliviensis_boliviensis
ENSSSCG00000030478	-	88	62.712	ENSSBOG00000025086	-	100	62.712	Saimiri_boliviensis_boliviensis
ENSSSCG00000030478	-	94	61.538	ENSSFOG00015006975	mrpl42	89	61.538	Scleropages_formosus
ENSSSCG00000030478	-	100	63.265	ENSSPUG00000015009	-	99	63.265	Sphenodon_punctatus
ENSSSCG00000030478	-	72	64.948	ENSSPAG00000013637	mrpl42	74	64.948	Stegastes_partitus
ENSSSCG00000030478	-	87	74.359	ENSTGUG00000008272	MRPL42	100	73.729	Taeniopygia_guttata
ENSSSCG00000030478	-	66	59.091	ENSTNIG00000018478	mrpl42	67	59.091	Tetraodon_nigroviridis
ENSSSCG00000030478	-	90	92.562	ENSTTRG00000003312	MRPL42	92	91.057	Tursiops_truncatus
ENSSSCG00000030478	-	100	92.254	ENSUAMG00000025405	-	100	92.254	Ursus_americanus
ENSSSCG00000030478	-	66	72.340	ENSUAMG00000019831	-	96	72.340	Ursus_americanus
ENSSSCG00000030478	-	86	77.236	ENSUMAG00000014643	-	77	77.236	Ursus_maritimus
ENSSSCG00000030478	-	100	92.254	ENSUMAG00000003107	-	100	92.254	Ursus_maritimus
ENSSSCG00000030478	-	88	89.831	ENSVPAG00000007658	MRPL42	100	89.831	Vicugna_pacos
ENSSSCG00000030478	-	54	86.842	ENSVVUG00000002834	-	94	86.842	Vulpes_vulpes
ENSSSCG00000030478	-	100	88.732	ENSVVUG00000011842	-	100	88.732	Vulpes_vulpes
ENSSSCG00000030478	-	53	88.000	ENSVVUG00000007253	-	96	88.000	Vulpes_vulpes
ENSSSCG00000030478	-	72	60.825	ENSXMAG00000004057	mrpl42	76	59.000	Xiphophorus_maculatus