EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000030507 (Gene tree)
Gene ID: 100127466
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 14353 bases
Position: chr14:120725400-120739752
Accession: 100127466
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000026180	SMN	PF06003.12	4.4e-16	1	1
ENSSSCP00000034018	SMN	PF06003.12	5.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000028296	SMNDC1-201	4941	-	ENSSSCP00000026180	238 (aa)	-	F1S5M7
ENSSSCT00000050809	SMNDC1-202	1184	XM_005671451	ENSSSCP00000034018	199 (aa)	XP_005671508	A0A286ZR12

Gene Model

Click here to download ENSSSCG00000030507's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000030507's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000030507	SMNDC1	100	99.160	ENSG00000119953	SMNDC1	100	99.160	Homo_sapiens
ENSSSCG00000030507	SMNDC1	100	74.790	ENSAPOG00000021772	smndc1	100	74.790	Acanthochromis_polyacanthus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSAMEG00000005251	SMNDC1	100	99.580	Ailuropoda_melanoleuca
ENSSSCG00000030507	SMNDC1	100	77.406	ENSACIG00000004819	smndc1	100	77.406	Amphilophus_citrinellus
ENSSSCG00000030507	SMNDC1	100	74.790	ENSAOCG00000017869	smndc1	100	74.790	Amphiprion_ocellaris
ENSSSCG00000030507	SMNDC1	100	74.790	ENSAPEG00000007752	smndc1	100	74.790	Amphiprion_percula
ENSSSCG00000030507	SMNDC1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSSSCG00000030507	SMNDC1	99	95.960	ENSAPLG00000004322	SMNDC1	100	95.960	Anas_platyrhynchos
ENSSSCG00000030507	SMNDC1	100	94.538	ENSACAG00000005983	SMNDC1	100	94.538	Anolis_carolinensis
ENSSSCG00000030507	SMNDC1	100	99.580	ENSANAG00000032875	SMNDC1	100	99.580	Aotus_nancymaae
ENSSSCG00000030507	SMNDC1	100	76.471	ENSACLG00000016360	smndc1	100	76.471	Astatotilapia_calliptera
ENSSSCG00000030507	SMNDC1	100	76.471	ENSAMXG00000020310	smndc1	100	76.471	Astyanax_mexicanus
ENSSSCG00000030507	SMNDC1	100	99.160	ENSBTAG00000000551	SMNDC1	100	99.160	Bos_taurus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSCJAG00000018624	SMNDC1	100	99.580	Callithrix_jacchus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSCAFG00000010720	SMNDC1	100	99.580	Canis_familiaris
ENSSSCG00000030507	SMNDC1	100	99.580	ENSCAFG00020011913	SMNDC1	100	99.580	Canis_lupus_dingo
ENSSSCG00000030507	SMNDC1	100	99.160	ENSCHIG00000010604	SMNDC1	100	99.160	Capra_hircus
ENSSSCG00000030507	SMNDC1	100	99.160	ENSTSYG00000026454	SMNDC1	100	99.160	Carlito_syrichta
ENSSSCG00000030507	SMNDC1	100	84.583	ENSCAPG00000009132	SMNDC1	100	99.502	Cavia_aperea
ENSSSCG00000030507	SMNDC1	100	99.580	ENSCPOG00000031666	SMNDC1	100	99.580	Cavia_porcellus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSCCAG00000021793	SMNDC1	100	99.580	Cebus_capucinus
ENSSSCG00000030507	SMNDC1	100	99.160	ENSCATG00000035910	SMNDC1	100	99.160	Cercocebus_atys
ENSSSCG00000030507	SMNDC1	100	99.160	ENSCLAG00000002838	SMNDC1	100	99.160	Chinchilla_lanigera
ENSSSCG00000030507	SMNDC1	100	99.580	ENSCSAG00000005169	SMNDC1	100	99.580	Chlorocebus_sabaeus
ENSSSCG00000030507	SMNDC1	81	98.964	ENSCHOG00000002936	SMNDC1	100	98.964	Choloepus_hoffmanni
ENSSSCG00000030507	SMNDC1	100	97.479	ENSCPBG00000012837	SMNDC1	100	97.479	Chrysemys_picta_bellii
ENSSSCG00000030507	SMNDC1	100	91.597	ENSCANG00000034620	-	100	91.597	Colobus_angolensis_palliatus
ENSSSCG00000030507	SMNDC1	100	78.571	ENSCANG00000036994	-	100	78.571	Colobus_angolensis_palliatus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSCANG00000031720	-	100	99.580	Colobus_angolensis_palliatus
ENSSSCG00000030507	SMNDC1	100	98.739	ENSCGRG00001012973	Smndc1	100	98.739	Cricetulus_griseus_chok1gshd
ENSSSCG00000030507	SMNDC1	100	98.739	ENSCGRG00000012396	Smndc1	100	98.739	Cricetulus_griseus_crigri
ENSSSCG00000030507	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSSSCG00000030507	SMNDC1	100	76.471	ENSCVAG00000020432	smndc1	100	76.471	Cyprinodon_variegatus
ENSSSCG00000030507	SMNDC1	100	78.992	ENSDARG00000056235	smndc1	100	78.992	Danio_rerio
ENSSSCG00000030507	SMNDC1	100	99.580	ENSDNOG00000016387	SMNDC1	83	99.580	Dasypus_novemcinctus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSDORG00000023715	Smndc1	100	99.580	Dipodomys_ordii
ENSSSCG00000030507	SMNDC1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSSSCG00000030507	SMNDC1	100	70.954	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSSSCG00000030507	SMNDC1	100	99.580	ENSEASG00005014930	SMNDC1	100	99.580	Equus_asinus_asinus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSECAG00000029973	SMNDC1	100	99.580	Equus_caballus
ENSSSCG00000030507	SMNDC1	99	70.202	ENSEEUG00000013407	-	100	70.202	Erinaceus_europaeus
ENSSSCG00000030507	SMNDC1	100	77.731	ENSELUG00000000227	smndc1	100	77.731	Esox_lucius
ENSSSCG00000030507	SMNDC1	100	99.580	ENSFCAG00000027353	SMNDC1	100	99.580	Felis_catus
ENSSSCG00000030507	SMNDC1	100	95.798	ENSFALG00000002306	SMNDC1	100	95.798	Ficedula_albicollis
ENSSSCG00000030507	SMNDC1	100	99.160	ENSFDAG00000006468	SMNDC1	100	99.160	Fukomys_damarensis
ENSSSCG00000030507	SMNDC1	100	76.050	ENSFHEG00000020150	smndc1	100	76.050	Fundulus_heteroclitus
ENSSSCG00000030507	SMNDC1	100	76.471	ENSGMOG00000016585	smndc1	100	76.471	Gadus_morhua
ENSSSCG00000030507	SMNDC1	100	95.798	ENSGALG00000008561	SMNDC1	100	95.798	Gallus_gallus
ENSSSCG00000030507	SMNDC1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSSSCG00000030507	SMNDC1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSSSCG00000030507	SMNDC1	100	97.479	ENSGAGG00000024547	SMNDC1	100	97.479	Gopherus_agassizii
ENSSSCG00000030507	SMNDC1	100	99.580	ENSGGOG00000010071	SMNDC1	100	99.580	Gorilla_gorilla
ENSSSCG00000030507	SMNDC1	100	76.471	ENSHBUG00000017596	smndc1	100	76.471	Haplochromis_burtoni
ENSSSCG00000030507	SMNDC1	100	68.443	ENSHGLG00000001157	-	100	64.898	Heterocephalus_glaber_female
ENSSSCG00000030507	SMNDC1	100	99.160	ENSHGLG00000013390	-	100	99.160	Heterocephalus_glaber_female
ENSSSCG00000030507	SMNDC1	100	99.160	ENSHGLG00100004814	-	100	99.160	Heterocephalus_glaber_male
ENSSSCG00000030507	SMNDC1	100	77.459	ENSHGLG00100004278	-	100	77.049	Heterocephalus_glaber_male
ENSSSCG00000030507	SMNDC1	100	75.314	ENSHCOG00000000783	smndc1	100	75.314	Hippocampus_comes
ENSSSCG00000030507	SMNDC1	100	77.731	ENSIPUG00000004217	smndc1	100	77.731	Ictalurus_punctatus
ENSSSCG00000030507	SMNDC1	100	99.160	ENSSTOG00000006088	SMNDC1	100	99.160	Ictidomys_tridecemlineatus
ENSSSCG00000030507	SMNDC1	100	98.739	ENSJJAG00000019974	Smndc1	100	98.739	Jaculus_jaculus
ENSSSCG00000030507	SMNDC1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSSSCG00000030507	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSSSCG00000030507	SMNDC1	100	84.034	ENSLACG00000007784	SMNDC1	100	84.034	Latimeria_chalumnae
ENSSSCG00000030507	SMNDC1	100	84.034	ENSLOCG00000012355	smndc1	100	84.034	Lepisosteus_oculatus
ENSSSCG00000030507	SMNDC1	100	99.160	ENSLAFG00000014353	SMNDC1	100	99.160	Loxodonta_africana
ENSSSCG00000030507	SMNDC1	100	99.580	ENSMFAG00000002433	-	100	99.580	Macaca_fascicularis
ENSSSCG00000030507	SMNDC1	100	81.513	ENSMFAG00000038381	-	100	81.513	Macaca_fascicularis
ENSSSCG00000030507	SMNDC1	100	81.513	ENSMMUG00000045875	-	100	81.513	Macaca_mulatta
ENSSSCG00000030507	SMNDC1	100	99.580	ENSMMUG00000007775	SMNDC1	100	99.580	Macaca_mulatta
ENSSSCG00000030507	SMNDC1	100	87.815	ENSMNEG00000033853	-	100	87.815	Macaca_nemestrina
ENSSSCG00000030507	SMNDC1	100	99.580	ENSMNEG00000042963	-	100	99.580	Macaca_nemestrina
ENSSSCG00000030507	SMNDC1	100	93.305	ENSMLEG00000040236	SMNDC1	100	92.887	Mandrillus_leucophaeus
ENSSSCG00000030507	SMNDC1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSSSCG00000030507	SMNDC1	100	76.471	ENSMZEG00005027510	smndc1	100	76.471	Maylandia_zebra
ENSSSCG00000030507	SMNDC1	99	95.455	ENSMGAG00000010777	SMNDC1	84	95.500	Meleagris_gallopavo
ENSSSCG00000030507	SMNDC1	99	80.591	ENSMAUG00000005459	-	93	80.591	Mesocricetus_auratus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSMAUG00000012243	-	100	99.580	Mesocricetus_auratus
ENSSSCG00000030507	SMNDC1	100	85.714	ENSMICG00000031640	-	100	85.714	Microcebus_murinus
ENSSSCG00000030507	SMNDC1	100	98.739	ENSMICG00000027336	-	100	98.739	Microcebus_murinus
ENSSSCG00000030507	SMNDC1	100	99.160	ENSMOCG00000002458	Smndc1	100	99.160	Microtus_ochrogaster
ENSSSCG00000030507	SMNDC1	100	76.050	ENSMMOG00000008856	smndc1	100	76.050	Mola_mola
ENSSSCG00000030507	SMNDC1	100	98.739	ENSMODG00000010542	SMNDC1	100	98.739	Monodelphis_domestica
ENSSSCG00000030507	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSSSCG00000030507	SMNDC1	100	98.319	MGP_CAROLIEiJ_G0023072	Smndc1	100	98.319	Mus_caroli
ENSSSCG00000030507	SMNDC1	100	98.739	ENSMUSG00000025024	Smndc1	100	98.739	Mus_musculus
ENSSSCG00000030507	SMNDC1	100	98.319	MGP_PahariEiJ_G0014560	Smndc1	100	98.319	Mus_pahari
ENSSSCG00000030507	SMNDC1	100	98.739	MGP_SPRETEiJ_G0023993	Smndc1	100	98.739	Mus_spretus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSMPUG00000002089	SMNDC1	100	99.580	Mustela_putorius_furo
ENSSSCG00000030507	SMNDC1	100	99.160	ENSMLUG00000016007	SMNDC1	100	99.160	Myotis_lucifugus
ENSSSCG00000030507	SMNDC1	100	98.739	ENSNGAG00000006833	Smndc1	100	98.739	Nannospalax_galili
ENSSSCG00000030507	SMNDC1	100	76.050	ENSNBRG00000017089	smndc1	100	76.050	Neolamprologus_brichardi
ENSSSCG00000030507	SMNDC1	100	99.580	ENSNLEG00000015471	SMNDC1	100	99.580	Nomascus_leucogenys
ENSSSCG00000030507	SMNDC1	98	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSSSCG00000030507	SMNDC1	100	99.580	ENSOPRG00000015348	SMNDC1	100	99.580	Ochotona_princeps
ENSSSCG00000030507	SMNDC1	99	73.232	ENSODEG00000007594	-	100	66.387	Octodon_degus
ENSSSCG00000030507	SMNDC1	100	76.050	ENSONIG00000000434	smndc1	100	76.050	Oreochromis_niloticus
ENSSSCG00000030507	SMNDC1	100	97.479	ENSOANG00000001598	SMNDC1	100	97.479	Ornithorhynchus_anatinus
ENSSSCG00000030507	SMNDC1	100	75.210	ENSOCUG00000012274	-	100	76.891	Oryctolagus_cuniculus
ENSSSCG00000030507	SMNDC1	100	98.739	ENSOCUG00000008145	-	100	98.739	Oryctolagus_cuniculus
ENSSSCG00000030507	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSSSCG00000030507	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSSSCG00000030507	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSSSCG00000030507	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSSSCG00000030507	SMNDC1	100	99.160	ENSOGAG00000000571	SMNDC1	100	99.160	Otolemur_garnettii
ENSSSCG00000030507	SMNDC1	100	99.160	ENSOARG00000009500	SMNDC1	100	99.160	Ovis_aries
ENSSSCG00000030507	SMNDC1	100	99.580	ENSPPAG00000027815	SMNDC1	100	99.580	Pan_paniscus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSPPRG00000013749	SMNDC1	100	99.580	Panthera_pardus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSPTIG00000011451	SMNDC1	100	99.580	Panthera_tigris_altaica
ENSSSCG00000030507	SMNDC1	100	99.580	ENSPTRG00000002937	SMNDC1	100	99.580	Pan_troglodytes
ENSSSCG00000030507	SMNDC1	100	93.697	ENSPANG00000031346	-	100	93.697	Papio_anubis
ENSSSCG00000030507	SMNDC1	100	99.580	ENSPANG00000020805	-	100	99.580	Papio_anubis
ENSSSCG00000030507	SMNDC1	100	80.672	ENSPKIG00000017164	smndc1	100	80.672	Paramormyrops_kingsleyae
ENSSSCG00000030507	SMNDC1	100	97.059	ENSPSIG00000012257	SMNDC1	100	97.059	Pelodiscus_sinensis
ENSSSCG00000030507	SMNDC1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSPEMG00000022058	Smndc1	100	99.580	Peromyscus_maniculatus_bairdii
ENSSSCG00000030507	SMNDC1	100	67.213	ENSPMAG00000007705	smndc1	100	67.623	Petromyzon_marinus
ENSSSCG00000030507	SMNDC1	100	98.739	ENSPCIG00000018419	SMNDC1	100	98.739	Phascolarctos_cinereus
ENSSSCG00000030507	SMNDC1	97	63.478	ENSPCIG00000009693	-	100	63.478	Phascolarctos_cinereus
ENSSSCG00000030507	SMNDC1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSSSCG00000030507	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSSSCG00000030507	SMNDC1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSSSCG00000030507	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSSSCG00000030507	SMNDC1	100	99.580	ENSPPYG00000002643	SMNDC1	100	99.580	Pongo_abelii
ENSSSCG00000030507	SMNDC1	81	97.927	ENSPCAG00000016183	SMNDC1	100	97.927	Procavia_capensis
ENSSSCG00000030507	SMNDC1	100	99.160	ENSPCOG00000024343	SMNDC1	100	99.160	Propithecus_coquereli
ENSSSCG00000030507	SMNDC1	100	76.050	ENSPVAG00000004368	SMNDC1	100	76.050	Pteropus_vampyrus
ENSSSCG00000030507	SMNDC1	100	75.879	ENSPNYG00000024093	smndc1	87	75.879	Pundamilia_nyererei
ENSSSCG00000030507	SMNDC1	100	76.471	ENSPNAG00000025285	smndc1	100	76.471	Pygocentrus_nattereri
ENSSSCG00000030507	SMNDC1	100	98.319	ENSRNOG00000014833	Smndc1	100	98.319	Rattus_norvegicus
ENSSSCG00000030507	SMNDC1	100	99.160	ENSRBIG00000000224	-	100	99.160	Rhinopithecus_bieti
ENSSSCG00000030507	SMNDC1	100	83.193	ENSRBIG00000032452	-	100	83.193	Rhinopithecus_bieti
ENSSSCG00000030507	SMNDC1	100	99.580	ENSRROG00000044992	-	100	99.580	Rhinopithecus_roxellana
ENSSSCG00000030507	SMNDC1	100	83.613	ENSRROG00000039125	-	100	83.613	Rhinopithecus_roxellana
ENSSSCG00000030507	SMNDC1	100	99.580	ENSSBOG00000026789	SMNDC1	100	99.580	Saimiri_boliviensis_boliviensis
ENSSSCG00000030507	SMNDC1	100	98.739	ENSSHAG00000015189	SMNDC1	100	98.739	Sarcophilus_harrisii
ENSSSCG00000030507	SMNDC1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSSSCG00000030507	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSSSCG00000030507	SMNDC1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSSSCG00000030507	SMNDC1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSSSCG00000030507	SMNDC1	100	99.160	ENSSARG00000006063	SMNDC1	100	99.160	Sorex_araneus
ENSSSCG00000030507	SMNDC1	100	95.798	ENSSPUG00000004574	SMNDC1	100	95.798	Sphenodon_punctatus
ENSSSCG00000030507	SMNDC1	100	74.370	ENSSPAG00000000338	smndc1	100	74.370	Stegastes_partitus
ENSSSCG00000030507	SMNDC1	100	95.798	ENSTGUG00000010599	SMNDC1	100	95.798	Taeniopygia_guttata
ENSSSCG00000030507	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSSSCG00000030507	SMNDC1	100	74.790	ENSTNIG00000013331	smndc1	100	74.790	Tetraodon_nigroviridis
ENSSSCG00000030507	SMNDC1	100	99.160	ENSTBEG00000014337	SMNDC1	100	99.160	Tupaia_belangeri
ENSSSCG00000030507	SMNDC1	100	99.580	ENSUAMG00000008142	SMNDC1	100	99.580	Ursus_americanus
ENSSSCG00000030507	SMNDC1	100	99.580	ENSUMAG00000023722	SMNDC1	100	99.580	Ursus_maritimus
ENSSSCG00000030507	SMNDC1	99	98.990	ENSVPAG00000003402	SMNDC1	100	98.990	Vicugna_pacos
ENSSSCG00000030507	SMNDC1	100	99.580	ENSVVUG00000007820	SMNDC1	100	99.580	Vulpes_vulpes
ENSSSCG00000030507	SMNDC1	60	80.986	ENSXETG00000015415	SMNDC1	100	80.986	Xenopus_tropicalis
ENSSSCG00000030507	SMNDC1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSSSCG00000030507	SMNDC1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus