EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000031847 (Gene tree)
Gene ID: 100628057
Gene Symbol: RBM28
Alias: FLJ10377
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 34883 bases
Position: chr18:20034316-20069198
Accession: 100628057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000037475	RRM_1	PF00076.22	1.4e-58	1	4
ENSSSCP00000037475	RRM_1	PF00076.22	1.4e-58	2	4
ENSSSCP00000037475	RRM_1	PF00076.22	1.4e-58	3	4
ENSSSCP00000037475	RRM_1	PF00076.22	1.4e-58	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000038456	RBM28-201	2825	XM_021078708	ENSSSCP00000037475	755 (aa)	XP_020934367	A0A287A0L7

Gene Model

Click here to download ENSSSCG00000031847's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000031847's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000031847	RBM28	79	30.319	ENSSSCG00000007382	PABPC1L	63	30.319

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000031847	RBM28	100	85.151	ENSG00000106344	RBM28	100	100.000	Homo_sapiens
ENSSSCG00000031847	RBM28	57	56.629	ENSAPOG00000015512	rbm28	100	50.504	Acanthochromis_polyacanthus
ENSSSCG00000031847	RBM28	100	91.304	ENSAMEG00000004776	RBM28	92	91.304	Ailuropoda_melanoleuca
ENSSSCG00000031847	RBM28	55	56.190	ENSACIG00000023153	rbm28	91	55.952	Amphilophus_citrinellus
ENSSSCG00000031847	RBM28	57	54.831	ENSAOCG00000000462	rbm28	100	51.707	Amphiprion_ocellaris
ENSSSCG00000031847	RBM28	57	54.751	ENSAPEG00000012996	rbm28	100	51.842	Amphiprion_percula
ENSSSCG00000031847	RBM28	58	53.571	ENSATEG00000001672	rbm28	100	50.316	Anabas_testudineus
ENSSSCG00000031847	RBM28	100	85.185	ENSANAG00000033922	RBM28	100	85.185	Aotus_nancymaae
ENSSSCG00000031847	RBM28	100	50.763	ENSACLG00000025024	rbm28	100	51.955	Astatotilapia_calliptera
ENSSSCG00000031847	RBM28	58	59.453	ENSAMXG00000000763	rbm28	99	59.491	Astyanax_mexicanus
ENSSSCG00000031847	RBM28	100	88.228	ENSBTAG00000017001	RBM28	100	100.000	Bos_taurus
ENSSSCG00000031847	RBM28	100	83.202	ENSCJAG00000017731	RBM28	100	83.596	Callithrix_jacchus
ENSSSCG00000031847	RBM28	100	86.376	ENSCAFG00000001667	RBM28	100	86.508	Canis_familiaris
ENSSSCG00000031847	RBM28	100	86.376	ENSCAFG00020021648	RBM28	100	86.508	Canis_lupus_dingo
ENSSSCG00000031847	RBM28	100	88.889	ENSCHIG00000014146	RBM28	100	88.757	Capra_hircus
ENSSSCG00000031847	RBM28	100	82.831	ENSTSYG00000002892	RBM28	100	95.000	Carlito_syrichta
ENSSSCG00000031847	RBM28	84	60.630	ENSCAPG00000013218	RBM28	100	60.157	Cavia_aperea
ENSSSCG00000031847	RBM28	100	80.418	ENSCPOG00000006253	RBM28	100	81.496	Cavia_porcellus
ENSSSCG00000031847	RBM28	100	84.848	ENSCCAG00000035105	RBM28	100	84.848	Cebus_capucinus
ENSSSCG00000031847	RBM28	100	84.646	ENSCATG00000040497	RBM28	100	97.500	Cercocebus_atys
ENSSSCG00000031847	RBM28	100	78.968	ENSCLAG00000003707	RBM28	100	77.302	Chinchilla_lanigera
ENSSSCG00000031847	RBM28	100	85.375	ENSCSAG00000010161	RBM28	100	85.375	Chlorocebus_sabaeus
ENSSSCG00000031847	RBM28	57	87.903	ENSCHOG00000001994	-	63	87.903	Choloepus_hoffmanni
ENSSSCG00000031847	RBM28	51	61.678	ENSCPBG00000018088	RBM28	96	56.121	Chrysemys_picta_bellii
ENSSSCG00000031847	RBM28	90	85.171	ENSCANG00000038397	RBM28	100	100.000	Colobus_angolensis_palliatus
ENSSSCG00000031847	RBM28	66	81.690	ENSCGRG00001021278	Rbm28	100	78.105	Cricetulus_griseus_chok1gshd
ENSSSCG00000031847	RBM28	100	80.210	ENSCGRG00000005098	Rbm28	100	79.659	Cricetulus_griseus_crigri
ENSSSCG00000031847	RBM28	100	49.047	ENSCSEG00000004212	rbm28	100	49.553	Cynoglossus_semilaevis
ENSSSCG00000031847	RBM28	58	55.459	ENSCVAG00000010493	rbm28	99	49.182	Cyprinodon_variegatus
ENSSSCG00000031847	RBM28	86	57.883	ENSDARG00000025332	rbm28	100	49.057	Danio_rerio
ENSSSCG00000031847	RBM28	100	84.433	ENSDNOG00000001124	RBM28	100	84.960	Dasypus_novemcinctus
ENSSSCG00000031847	RBM28	65	82.661	ENSDORG00000004184	Rbm28	97	82.661	Dipodomys_ordii
ENSSSCG00000031847	RBM28	69	39.619	FBgn0260456	CG4806	92	36.012	Drosophila_melanogaster
ENSSSCG00000031847	RBM28	100	72.930	ENSETEG00000007130	RBM28	99	73.097	Echinops_telfairi
ENSSSCG00000031847	RBM28	99	41.005	ENSEBUG00000004419	rbm28	98	41.534	Eptatretus_burgeri
ENSSSCG00000031847	RBM28	100	86.701	ENSEASG00005008528	RBM28	100	86.623	Equus_asinus_asinus
ENSSSCG00000031847	RBM28	100	86.328	ENSECAG00000007745	RBM28	100	86.494	Equus_caballus
ENSSSCG00000031847	RBM28	100	76.933	ENSEEUG00000002389	RBM28	100	76.271	Erinaceus_europaeus
ENSSSCG00000031847	RBM28	100	51.673	ENSELUG00000020602	rbm28	100	52.823	Esox_lucius
ENSSSCG00000031847	RBM28	100	85.847	ENSFCAG00000000946	RBM28	100	100.000	Felis_catus
ENSSSCG00000031847	RBM28	100	82.237	ENSFDAG00000010169	RBM28	100	82.199	Fukomys_damarensis
ENSSSCG00000031847	RBM28	57	53.196	ENSGMOG00000007091	rbm28	99	48.344	Gadus_morhua
ENSSSCG00000031847	RBM28	59	56.098	ENSGAFG00000004802	rbm28	96	55.804	Gambusia_affinis
ENSSSCG00000031847	RBM28	57	55.251	ENSGACG00000012612	rbm28	100	50.591	Gasterosteus_aculeatus
ENSSSCG00000031847	RBM28	79	80.769	ENSGAGG00000008873	RBM28	91	80.769	Gopherus_agassizii
ENSSSCG00000031847	RBM28	95	84.327	ENSGGOG00000004644	RBM28	97	84.882	Gorilla_gorilla
ENSSSCG00000031847	RBM28	91	51.773	ENSHBUG00000009611	rbm28	95	53.147	Haplochromis_burtoni
ENSSSCG00000031847	RBM28	100	82.454	ENSHGLG00000005409	RBM28	100	82.609	Heterocephalus_glaber_female
ENSSSCG00000031847	RBM28	100	82.213	ENSHGLG00100016458	RBM28	100	81.438	Heterocephalus_glaber_male
ENSSSCG00000031847	RBM28	82	50.000	ENSHCOG00000010597	rbm28	99	42.638	Hippocampus_comes
ENSSSCG00000031847	RBM28	100	82.898	ENSSTOG00000002169	RBM28	100	83.029	Ictidomys_tridecemlineatus
ENSSSCG00000031847	RBM28	100	75.098	ENSJJAG00000022400	Rbm28	100	75.594	Jaculus_jaculus
ENSSSCG00000031847	RBM28	58	55.605	ENSKMAG00000013348	rbm28	99	50.064	Kryptolebias_marmoratus
ENSSSCG00000031847	RBM28	59	55.824	ENSLBEG00000012998	rbm28	100	49.629	Labrus_bergylta
ENSSSCG00000031847	RBM28	74	59.402	ENSLACG00000010485	-	100	58.031	Latimeria_chalumnae
ENSSSCG00000031847	RBM28	93	61.058	ENSLOCG00000015541	rbm28	85	60.870	Lepisosteus_oculatus
ENSSSCG00000031847	RBM28	100	83.968	ENSLAFG00000010717	RBM28	100	83.466	Loxodonta_africana
ENSSSCG00000031847	RBM28	100	84.777	ENSMFAG00000031036	RBM28	100	97.500	Macaca_fascicularis
ENSSSCG00000031847	RBM28	100	84.535	ENSMMUG00000007250	RBM28	100	97.500	Macaca_mulatta
ENSSSCG00000031847	RBM28	100	84.094	ENSMNEG00000036970	RBM28	100	97.500	Macaca_nemestrina
ENSSSCG00000031847	RBM28	84	85.106	ENSMLEG00000037717	RBM28	100	85.106	Mandrillus_leucophaeus
ENSSSCG00000031847	RBM28	100	51.018	ENSMAMG00000008525	rbm28	100	51.680	Mastacembelus_armatus
ENSSSCG00000031847	RBM28	93	49.659	ENSMZEG00005019625	rbm28	100	51.081	Maylandia_zebra
ENSSSCG00000031847	RBM28	100	76.598	ENSMAUG00000002263	Rbm28	100	77.664	Mesocricetus_auratus
ENSSSCG00000031847	RBM28	93	81.994	ENSMICG00000000107	RBM28	100	81.994	Microcebus_murinus
ENSSSCG00000031847	RBM28	100	81.003	ENSMOCG00000014615	Rbm28	100	80.053	Microtus_ochrogaster
ENSSSCG00000031847	RBM28	58	55.402	ENSMMOG00000008600	rbm28	99	51.935	Mola_mola
ENSSSCG00000031847	RBM28	100	73.595	ENSMODG00000015151	RBM28	100	74.708	Monodelphis_domestica
ENSSSCG00000031847	RBM28	59	54.343	ENSMALG00000006419	rbm28	100	48.550	Monopterus_albus
ENSSSCG00000031847	RBM28	100	80.079	MGP_CAROLIEiJ_G0028162	Rbm28	100	79.657	Mus_caroli
ENSSSCG00000031847	RBM28	100	79.288	ENSMUSG00000029701	Rbm28	100	79.260	Mus_musculus
ENSSSCG00000031847	RBM28	100	80.475	MGP_PahariEiJ_G0021920	Rbm28	100	79.947	Mus_pahari
ENSSSCG00000031847	RBM28	100	79.683	MGP_SPRETEiJ_G0029162	Rbm28	100	79.657	Mus_spretus
ENSSSCG00000031847	RBM28	100	87.467	ENSMPUG00000006511	RBM28	100	87.467	Mustela_putorius_furo
ENSSSCG00000031847	RBM28	100	85.433	ENSMLUG00000002186	RBM28	100	85.901	Myotis_lucifugus
ENSSSCG00000031847	RBM28	100	79.735	ENSNGAG00000006480	-	100	79.470	Nannospalax_galili
ENSSSCG00000031847	RBM28	100	77.351	ENSNGAG00000017946	-	100	77.086	Nannospalax_galili
ENSSSCG00000031847	RBM28	100	83.922	ENSNLEG00000012307	RBM28	100	100.000	Nomascus_leucogenys
ENSSSCG00000031847	RBM28	81	82.099	ENSMEUG00000009611	RBM28	91	82.099	Notamacropus_eugenii
ENSSSCG00000031847	RBM28	56	82.772	ENSOPRG00000015140	RBM28	90	73.896	Ochotona_princeps
ENSSSCG00000031847	RBM28	100	77.675	ENSODEG00000003213	-	100	76.623	Octodon_degus
ENSSSCG00000031847	RBM28	80	83.099	ENSODEG00000013217	-	82	88.114	Octodon_degus
ENSSSCG00000031847	RBM28	59	55.482	ENSONIG00000014924	rbm28	100	51.279	Oreochromis_niloticus
ENSSSCG00000031847	RBM28	100	63.755	ENSOANG00000000815	-	100	64.175	Ornithorhynchus_anatinus
ENSSSCG00000031847	RBM28	100	80.443	ENSOCUG00000003009	RBM28	100	81.095	Oryctolagus_cuniculus
ENSSSCG00000031847	RBM28	99	49.559	ENSORLG00000009636	rbm28	99	50.914	Oryzias_latipes
ENSSSCG00000031847	RBM28	59	55.654	ENSORLG00020002123	rbm28	99	51.376	Oryzias_latipes_hni
ENSSSCG00000031847	RBM28	85	60.287	ENSORLG00015015030	rbm28	97	58.738	Oryzias_latipes_hsok
ENSSSCG00000031847	RBM28	59	57.802	ENSOMEG00000007801	rbm28	100	50.126	Oryzias_melastigma
ENSSSCG00000031847	RBM28	82	92.500	ENSOGAG00000006011	RBM28	100	92.500	Otolemur_garnettii
ENSSSCG00000031847	RBM28	100	88.011	ENSOARG00000002547	RBM28	100	88.406	Ovis_aries
ENSSSCG00000031847	RBM28	100	84.797	ENSPPAG00000041730	RBM28	100	100.000	Pan_paniscus
ENSSSCG00000031847	RBM28	100	85.073	ENSPPRG00000004420	RBM28	100	100.000	Panthera_pardus
ENSSSCG00000031847	RBM28	100	85.317	ENSPTIG00000008550	RBM28	100	100.000	Panthera_tigris_altaica
ENSSSCG00000031847	RBM28	100	84.928	ENSPTRG00000019659	RBM28	100	100.000	Pan_troglodytes
ENSSSCG00000031847	RBM28	100	84.535	ENSPANG00000022295	RBM28	100	97.500	Papio_anubis
ENSSSCG00000031847	RBM28	99	51.238	ENSPKIG00000023453	rbm28	99	52.363	Paramormyrops_kingsleyae
ENSSSCG00000031847	RBM28	88	55.083	ENSPMGG00000012840	rbm28	100	49.272	Periophthalmus_magnuspinnatus
ENSSSCG00000031847	RBM28	100	77.543	ENSPEMG00000020673	Rbm28	100	76.750	Peromyscus_maniculatus_bairdii
ENSSSCG00000031847	RBM28	100	72.572	ENSPCIG00000012810	RBM28	100	72.810	Phascolarctos_cinereus
ENSSSCG00000031847	RBM28	59	56.455	ENSPFOG00000018209	rbm28	100	50.579	Poecilia_formosa
ENSSSCG00000031847	RBM28	58	55.408	ENSPLAG00000016078	rbm28	96	49.871	Poecilia_latipinna
ENSSSCG00000031847	RBM28	59	56.332	ENSPMEG00000004292	rbm28	100	50.514	Poecilia_mexicana
ENSSSCG00000031847	RBM28	57	55.506	ENSPREG00000014287	rbm28	98	50.065	Poecilia_reticulata
ENSSSCG00000031847	RBM28	100	85.639	ENSPPYG00000017975	RBM28	100	85.903	Pongo_abelii
ENSSSCG00000031847	RBM28	74	75.775	ENSPCAG00000008223	RBM28	82	75.775	Procavia_capensis
ENSSSCG00000031847	RBM28	100	83.073	ENSPCOG00000016797	RBM28	100	100.000	Propithecus_coquereli
ENSSSCG00000031847	RBM28	77	93.488	ENSPVAG00000005443	RBM28	74	97.436	Pteropus_vampyrus
ENSSSCG00000031847	RBM28	100	50.820	ENSPNYG00000014003	rbm28	100	52.020	Pundamilia_nyererei
ENSSSCG00000031847	RBM28	100	77.836	ENSRNOG00000005468	Rbm28	100	77.836	Rattus_norvegicus
ENSSSCG00000031847	RBM28	100	84.424	ENSRBIG00000033990	RBM28	100	100.000	Rhinopithecus_bieti
ENSSSCG00000031847	RBM28	100	84.273	ENSRROG00000040747	RBM28	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000031847	RBM28	91	79.058	ENSSBOG00000012308	RBM28	100	79.058	Saimiri_boliviensis_boliviensis
ENSSSCG00000031847	RBM28	96	69.064	ENSSHAG00000017017	RBM28	99	67.248	Sarcophilus_harrisii
ENSSSCG00000031847	RBM28	58	57.428	ENSSFOG00015001231	rbm28	100	54.058	Scleropages_formosus
ENSSSCG00000031847	RBM28	59	53.363	ENSSMAG00000003885	rbm28	98	51.240	Scophthalmus_maximus
ENSSSCG00000031847	RBM28	59	55.799	ENSSDUG00000014270	rbm28	95	53.831	Seriola_dumerili
ENSSSCG00000031847	RBM28	59	55.799	ENSSLDG00000020099	rbm28	100	49.689	Seriola_lalandi_dorsalis
ENSSSCG00000031847	RBM28	76	88.354	ENSSARG00000008303	RBM28	80	88.175	Sorex_araneus
ENSSSCG00000031847	RBM28	66	77.941	ENSSPUG00000000838	RBM28	78	77.941	Sphenodon_punctatus
ENSSSCG00000031847	RBM28	59	53.419	ENSTRUG00000013311	rbm28	99	48.645	Takifugu_rubripes
ENSSSCG00000031847	RBM28	99	51.601	ENSTNIG00000017962	rbm28	99	51.876	Tetraodon_nigroviridis
ENSSSCG00000031847	RBM28	86	86.686	ENSTBEG00000012749	RBM28	85	86.686	Tupaia_belangeri
ENSSSCG00000031847	RBM28	100	86.842	ENSTTRG00000013647	RBM28	100	86.711	Tursiops_truncatus
ENSSSCG00000031847	RBM28	100	80.795	ENSUAMG00000006949	RBM28	100	81.060	Ursus_americanus
ENSSSCG00000031847	RBM28	100	88.228	ENSUMAG00000005997	RBM28	100	88.228	Ursus_maritimus
ENSSSCG00000031847	RBM28	88	81.846	ENSVPAG00000008304	RBM28	85	81.591	Vicugna_pacos
ENSSSCG00000031847	RBM28	100	86.243	ENSVVUG00000007270	RBM28	100	86.376	Vulpes_vulpes
ENSSSCG00000031847	RBM28	99	55.442	ENSXETG00000009271	rbm28	99	56.298	Xenopus_tropicalis
ENSSSCG00000031847	RBM28	58	54.525	ENSXCOG00000020357	rbm28	99	52.174	Xiphophorus_couchianus
ENSSSCG00000031847	RBM28	58	55.088	ENSXMAG00000004415	rbm28	100	50.000	Xiphophorus_maculatus