EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000032947 (Gene tree)
Gene ID: 100521629
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 59624 bases
Position: chr6:82286211-82345834
Accession: 100521629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000034988	PWI	PF01480.17	1e-29	1	1
ENSSSCP00000045552	PWI	PF01480.17	1e-29	1	1
ENSSSCP00000047802	PWI	PF01480.17	1.1e-29	1	1
ENSSSCP00000044727	PWI	PF01480.17	8e-09	1	1
ENSSSCP00000032511	PWI	PF01480.17	8.4e-09	1	1
ENSSSCP00000039623	PWI	PF01480.17	8.6e-09	1	1
ENSSSCP00000046663	PWI	PF01480.17	8.6e-09	1	1
ENSSSCP00000036497	PWI	PF01480.17	8.8e-09	1	1
ENSSSCP00000040914	PWI	PF01480.17	8.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000064553	SRRM1-205	4930	XM_021095586	ENSSSCP00000032511	806 (aa)	XP_020951245	A0A286ZM20
ENSSSCT00000059743	SRRM1-201	2907	XM_021095556	ENSSSCP00000047802	968 (aa)	XP_020951215	A0A287AV47
ENSSSCT00000053795	SRRM1-206	4828	XM_021095582	ENSSSCP00000039623	821 (aa)	XP_020951241	A0A287A778
ENSSSCT00000065408	SRRM1-208	5362	XM_021095568	ENSSSCP00000045552	879 (aa)	XP_020951227	A0A287ANS5
ENSSSCT00000042480	SRRM1-207	5655	-	ENSSSCP00000034988	879 (aa)	-	A0A287ANS5
ENSSSCT00000043509	SRRM1-202	5168	XM_021095578	ENSSSCP00000036497	835 (aa)	XP_020951237	A0A286ZXT2
ENSSSCT00000062684	SRRM1-203	5122	XM_021095580	ENSSSCP00000046663	821 (aa)	XP_020951239	A0A287A778
ENSSSCT00000037032	SRRM1-209	4543	XM_021095576	ENSSSCP00000044727	765 (aa)	XP_020951235	A0A287AL25
ENSSSCT00000065942	SRRM1-204	3037	XM_021095579	ENSSSCP00000040914	835 (aa)	XP_020951238	A0A286ZXT2

Gene Model

Click here to download ENSSSCG00000032947's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000032947's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000032947	SRRM1	100	97.929	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSSSCG00000032947	SRRM1	100	97.725	ENSAMEG00000010075	SRRM1	99	97.805	Ailuropoda_melanoleuca
ENSSSCG00000032947	SRRM1	62	64.478	ENSAPLG00000002066	SRRM1	60	75.832	Anas_platyrhynchos
ENSSSCG00000032947	SRRM1	100	97.497	ENSANAG00000035606	SRRM1	99	97.585	Aotus_nancymaae
ENSSSCG00000032947	SRRM1	100	98.066	ENSBTAG00000013772	SRRM1	99	98.134	Bos_taurus
ENSSSCG00000032947	SRRM1	100	96.833	ENSCJAG00000020822	SRRM1	100	96.833	Callithrix_jacchus
ENSSSCG00000032947	SRRM1	100	98.417	ENSCAFG00020020948	SRRM1	99	97.036	Canis_lupus_dingo
ENSSSCG00000032947	SRRM1	100	96.399	ENSCHIG00000014656	SRRM1	99	96.389	Capra_hircus
ENSSSCG00000032947	SRRM1	100	97.564	ENSTSYG00000006782	SRRM1	99	97.146	Carlito_syrichta
ENSSSCG00000032947	SRRM1	100	93.857	ENSCAPG00000011473	SRRM1	100	94.072	Cavia_aperea
ENSSSCG00000032947	SRRM1	100	94.881	ENSCPOG00000015594	SRRM1	99	95.060	Cavia_porcellus
ENSSSCG00000032947	SRRM1	100	97.442	ENSCCAG00000029474	SRRM1	99	97.036	Cebus_capucinus
ENSSSCG00000032947	SRRM1	100	97.808	ENSCATG00000031303	SRRM1	99	97.805	Cercocebus_atys
ENSSSCG00000032947	SRRM1	86	97.465	ENSCHOG00000000027	SRRM1	73	97.500	Choloepus_hoffmanni
ENSSSCG00000032947	SRRM1	100	97.808	ENSCANG00000028271	SRRM1	99	97.366	Colobus_angolensis_palliatus
ENSSSCG00000032947	SRRM1	98	91.870	ENSDNOG00000049141	SRRM1	97	93.729	Dasypus_novemcinctus
ENSSSCG00000032947	SRRM1	100	97.383	ENSEASG00005004270	SRRM1	99	97.475	Equus_asinus_asinus
ENSSSCG00000032947	SRRM1	100	97.497	ENSECAG00000026981	SRRM1	99	97.585	Equus_caballus
ENSSSCG00000032947	SRRM1	100	98.417	ENSFCAG00000000678	-	99	98.024	Felis_catus
ENSSSCG00000032947	SRRM1	100	96.701	ENSFDAG00000009903	SRRM1	99	96.817	Fukomys_damarensis
ENSSSCG00000032947	SRRM1	100	97.808	ENSGGOG00000005209	SRRM1	99	97.366	Gorilla_gorilla
ENSSSCG00000032947	SRRM1	100	96.701	ENSHGLG00000017105	SRRM1	99	96.817	Heterocephalus_glaber_female
ENSSSCG00000032947	SRRM1	100	96.590	ENSHGLG00100016772	SRRM1	99	94.760	Heterocephalus_glaber_male
ENSSSCG00000032947	SRRM1	100	97.611	ENSSTOG00000014640	SRRM1	99	97.695	Ictidomys_tridecemlineatus
ENSSSCG00000032947	SRRM1	100	94.912	ENSLAFG00000013830	SRRM1	99	95.085	Loxodonta_africana
ENSSSCG00000032947	SRRM1	100	97.838	ENSMFAG00000025726	SRRM1	100	97.725	Macaca_fascicularis
ENSSSCG00000032947	SRRM1	100	68.287	ENSMFAG00000038841	-	61	78.672	Macaca_fascicularis
ENSSSCG00000032947	SRRM1	60	79.074	ENSMMUG00000039269	-	62	75.465	Macaca_mulatta
ENSSSCG00000032947	SRRM1	100	97.725	ENSMMUG00000006645	SRRM1	99	97.380	Macaca_mulatta
ENSSSCG00000032947	SRRM1	100	97.808	ENSMNEG00000039415	SRRM1	99	97.805	Macaca_nemestrina
ENSSSCG00000032947	SRRM1	100	95.379	ENSMLEG00000038030	-	99	90.340	Mandrillus_leucophaeus
ENSSSCG00000032947	SRRM1	61	74.451	ENSMLEG00000032221	-	62	71.508	Mandrillus_leucophaeus
ENSSSCG00000032947	SRRM1	100	97.497	ENSMICG00000006553	SRRM1	99	97.585	Microcebus_murinus
ENSSSCG00000032947	SRRM1	58	96.861	MGP_CAROLIEiJ_G0026636	Srrm1	96	85.520	Mus_caroli
ENSSSCG00000032947	SRRM1	58	96.861	ENSMUSG00000028809	Srrm1	96	85.520	Mus_musculus
ENSSSCG00000032947	SRRM1	53	97.207	MGP_PahariEiJ_G0028969	Srrm1	96	85.520	Mus_pahari
ENSSSCG00000032947	SRRM1	58	96.861	MGP_SPRETEiJ_G0027616	Srrm1	96	85.520	Mus_spretus
ENSSSCG00000032947	SRRM1	100	97.929	ENSNLEG00000008966	SRRM1	99	97.475	Nomascus_leucogenys
ENSSSCG00000032947	SRRM1	87	83.256	ENSMEUG00000014704	SRRM1	65	89.153	Notamacropus_eugenii
ENSSSCG00000032947	SRRM1	66	100.000	ENSODEG00000013381	SRRM1	66	87.614	Octodon_degus
ENSSSCG00000032947	SRRM1	100	96.145	ENSOCUG00000008438	SRRM1	99	96.280	Oryctolagus_cuniculus
ENSSSCG00000032947	SRRM1	100	96.587	ENSOGAG00000010210	SRRM1	99	96.707	Otolemur_garnettii
ENSSSCG00000032947	SRRM1	95	97.899	ENSOARG00000006453	SRRM1	98	97.979	Ovis_aries
ENSSSCG00000032947	SRRM1	100	97.808	ENSPPAG00000043918	SRRM1	99	97.366	Pan_paniscus
ENSSSCG00000032947	SRRM1	100	98.417	ENSPPRG00000002509	SRRM1	99	98.024	Panthera_pardus
ENSSSCG00000032947	SRRM1	100	94.091	ENSPTIG00000008778	-	99	93.392	Panthera_tigris_altaica
ENSSSCG00000032947	SRRM1	100	97.952	ENSPTRG00000000349	SRRM1	100	97.844	Pan_troglodytes
ENSSSCG00000032947	SRRM1	60	77.419	ENSPANG00000035568	-	62	73.743	Papio_anubis
ENSSSCG00000032947	SRRM1	100	97.098	ENSPANG00000010194	SRRM1	99	96.707	Papio_anubis
ENSSSCG00000032947	SRRM1	100	97.159	ENSPPYG00000001716	SRRM1	99	97.259	Pongo_abelii
ENSSSCG00000032947	SRRM1	100	97.045	ENSPCOG00000021311	SRRM1	99	97.149	Propithecus_coquereli
ENSSSCG00000032947	SRRM1	100	97.611	ENSPVAG00000005836	SRRM1	99	97.695	Pteropus_vampyrus
ENSSSCG00000032947	SRRM1	99	91.234	ENSRBIG00000035461	SRRM1	99	90.989	Rhinopithecus_bieti
ENSSSCG00000032947	SRRM1	100	97.808	ENSRROG00000035151	SRRM1	99	97.366	Rhinopithecus_roxellana
ENSSSCG00000032947	SRRM1	100	95.791	ENSSBOG00000019884	SRRM1	99	97.796	Saimiri_boliviensis_boliviensis
ENSSSCG00000032947	SRRM1	100	90.778	ENSSARG00000013718	SRRM1	91	90.778	Sorex_araneus
ENSSSCG00000032947	SRRM1	66	72.997	ENSSPUG00000015890	SRRM1	58	82.214	Sphenodon_punctatus
ENSSSCG00000032947	SRRM1	100	96.815	ENSTBEG00000000100	SRRM1	99	96.926	Tupaia_belangeri
ENSSSCG00000032947	SRRM1	100	96.928	ENSTTRG00000009365	SRRM1	100	97.036	Tursiops_truncatus
ENSSSCG00000032947	SRRM1	92	98.674	ENSUMAG00000013121	SRRM1	95	97.041	Ursus_maritimus
ENSSSCG00000032947	SRRM1	100	93.780	ENSVPAG00000007698	SRRM1	100	95.578	Vicugna_pacos
ENSSSCG00000032947	SRRM1	100	95.250	ENSVVUG00000026966	SRRM1	99	89.791	Vulpes_vulpes