EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000033303 (Gene tree)
Gene ID: 110256288
Gene Symbol: MBD4
Alias: MED1
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 14142 bases
Position: chr13:68814823-68828964
Accession: 110256288
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000032501	MBD	PF01429.19	9.5e-20	1	1
ENSSSCP00000050223	MBD	PF01429.19	1e-19	1	1
ENSSSCP00000046516	MBD	PF01429.19	1e-19	1	1
ENSSSCP00000052533	MBD	PF01429.19	1.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000061275	MBD4-202	6221	-	ENSSSCP00000046516	531 (aa)	-	A0A287AR21
ENSSSCT00000036989	MBD4-203	5469	XM_021069359	ENSSSCP00000052533	567 (aa)	XP_020925018	M3VH91
ENSSSCT00000056277	MBD4-204	5319	-	ENSSSCP00000032501	517 (aa)	-	A0A286ZM14
ENSSSCT00000053411	MBD4-201	6296	-	ENSSSCP00000050223	556 (aa)	-	A0A287B2A4

Gene Model

Click here to download ENSSSCG00000033303's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000033303's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000033303	MBD4	100	76.389	ENSG00000129071	MBD4	98	80.349	Homo_sapiens
ENSSSCG00000033303	MBD4	100	77.487	ENSAMEG00000004562	MBD4	99	77.487	Ailuropoda_melanoleuca
ENSSSCG00000033303	MBD4	57	62.712	ENSATEG00000014594	MBD4	66	62.712	Anabas_testudineus
ENSSSCG00000033303	MBD4	51	73.099	ENSAMXG00000017271	mbd4	68	73.099	Astyanax_mexicanus
ENSSSCG00000033303	MBD4	100	73.380	ENSBTAG00000021645	MBD4	100	73.380	Bos_taurus
ENSSSCG00000033303	MBD4	100	72.648	ENSCJAG00000017293	MBD4	99	72.648	Callithrix_jacchus
ENSSSCG00000033303	MBD4	100	76.696	ENSCAFG00000004867	MBD4	99	76.696	Canis_familiaris
ENSSSCG00000033303	MBD4	100	76.696	ENSCAFG00020007082	MBD4	99	76.696	Canis_lupus_dingo
ENSSSCG00000033303	MBD4	100	74.081	ENSCHIG00000009760	MBD4	100	74.081	Capra_hircus
ENSSSCG00000033303	MBD4	100	73.043	ENSCCAG00000029796	MBD4	99	73.043	Cebus_capucinus
ENSSSCG00000033303	MBD4	100	74.869	ENSCATG00000035211	MBD4	99	74.869	Cercocebus_atys
ENSSSCG00000033303	MBD4	100	67.247	ENSCLAG00000008974	MBD4	100	67.247	Chinchilla_lanigera
ENSSSCG00000033303	MBD4	100	74.695	ENSCSAG00000009037	MBD4	99	74.695	Chlorocebus_sabaeus
ENSSSCG00000033303	MBD4	94	49.474	ENSCPBG00000014704	MBD4	98	49.474	Chrysemys_picta_bellii
ENSSSCG00000033303	MBD4	100	74.695	ENSCANG00000007120	MBD4	99	74.695	Colobus_angolensis_palliatus
ENSSSCG00000033303	MBD4	100	67.657	ENSCGRG00001003507	Mbd4	100	68.007	Cricetulus_griseus_chok1gshd
ENSSSCG00000033303	MBD4	100	67.657	ENSCGRG00000010974	Mbd4	100	68.007	Cricetulus_griseus_crigri
ENSSSCG00000033303	MBD4	100	72.426	ENSDNOG00000049619	MBD4	100	72.426	Dasypus_novemcinctus
ENSSSCG00000033303	MBD4	83	62.313	ENSDORG00000000902	-	98	61.458	Dipodomys_ordii
ENSSSCG00000033303	MBD4	100	78.010	ENSEASG00005014800	MBD4	100	78.010	Equus_asinus_asinus
ENSSSCG00000033303	MBD4	100	78.010	ENSECAG00000022106	MBD4	100	78.010	Equus_caballus
ENSSSCG00000033303	MBD4	93	63.429	ENSEEUG00000011459	MBD4	97	63.429	Erinaceus_europaeus
ENSSSCG00000033303	MBD4	100	76.655	ENSFCAG00000000083	MBD4	99	76.655	Felis_catus
ENSSSCG00000033303	MBD4	82	44.161	ENSFALG00000013663	MBD4	99	43.737	Ficedula_albicollis
ENSSSCG00000033303	MBD4	90	51.210	ENSGAGG00000018644	MBD4	93	51.210	Gopherus_agassizii
ENSSSCG00000033303	MBD4	100	75.347	ENSGGOG00000010698	MBD4	99	75.347	Gorilla_gorilla
ENSSSCG00000033303	MBD4	100	68.467	ENSHGLG00000009034	MBD4	100	68.467	Heterocephalus_glaber_female
ENSSSCG00000033303	MBD4	100	68.467	ENSHGLG00100000135	MBD4	100	68.467	Heterocephalus_glaber_male
ENSSSCG00000033303	MBD4	100	69.284	ENSSTOG00000020663	MBD4	100	69.284	Ictidomys_tridecemlineatus
ENSSSCG00000033303	MBD4	99	74.003	ENSLAFG00000010609	MBD4	99	74.003	Loxodonta_africana
ENSSSCG00000033303	MBD4	99	74.825	ENSMFAG00000002266	MBD4	99	74.825	Macaca_fascicularis
ENSSSCG00000033303	MBD4	99	74.435	ENSMMUG00000012723	MBD4	99	74.435	Macaca_mulatta
ENSSSCG00000033303	MBD4	97	73.540	ENSMNEG00000029752	MBD4	99	73.540	Macaca_nemestrina
ENSSSCG00000033303	MBD4	100	74.346	ENSMLEG00000024859	MBD4	99	74.346	Mandrillus_leucophaeus
ENSSSCG00000033303	MBD4	100	75.350	ENSMICG00000008022	MBD4	99	75.350	Microcebus_murinus
ENSSSCG00000033303	MBD4	75	46.329	ENSMOCG00000002466	-	98	46.329	Microtus_ochrogaster
ENSSSCG00000033303	MBD4	87	60.396	ENSMODG00000006399	-	99	60.396	Monodelphis_domestica
ENSSSCG00000033303	MBD4	100	67.014	MGP_CAROLIEiJ_G0028760	Mbd4	100	67.014	Mus_caroli
ENSSSCG00000033303	MBD4	100	65.972	ENSMUSG00000030322	Mbd4	100	65.972	Mus_musculus
ENSSSCG00000033303	MBD4	100	66.609	MGP_PahariEiJ_G0022511	-	100	66.609	Mus_pahari
ENSSSCG00000033303	MBD4	100	65.278	MGP_SPRETEiJ_G0029788	Mbd4	100	65.278	Mus_spretus
ENSSSCG00000033303	MBD4	100	73.997	ENSMPUG00000017195	MBD4	99	73.997	Mustela_putorius_furo
ENSSSCG00000033303	MBD4	95	79.927	ENSMLUG00000014766	MBD4	99	79.927	Myotis_lucifugus
ENSSSCG00000033303	MBD4	100	75.610	ENSNLEG00000005337	MBD4	99	75.610	Nomascus_leucogenys
ENSSSCG00000033303	MBD4	55	100.000	ENSMEUG00000015599	-	77	100.000	Notamacropus_eugenii
ENSSSCG00000033303	MBD4	100	64.921	ENSOPRG00000000473	MBD4	99	64.921	Ochotona_princeps
ENSSSCG00000033303	MBD4	74	47.436	ENSOANG00000004589	-	97	45.244	Ornithorhynchus_anatinus
ENSSSCG00000033303	MBD4	100	64.645	ENSOCUG00000013006	MBD4	99	64.645	Oryctolagus_cuniculus
ENSSSCG00000033303	MBD4	100	70.783	ENSOGAG00000010236	MBD4	100	70.783	Otolemur_garnettii
ENSSSCG00000033303	MBD4	100	74.606	ENSOARG00000014699	MBD4	100	74.606	Ovis_aries
ENSSSCG00000033303	MBD4	100	75.826	ENSPPAG00000036528	MBD4	99	75.826	Pan_paniscus
ENSSSCG00000033303	MBD4	100	76.091	ENSPPRG00000016480	MBD4	99	76.091	Panthera_pardus
ENSSSCG00000033303	MBD4	100	76.042	ENSPTRG00000015377	MBD4	99	76.042	Pan_troglodytes
ENSSSCG00000033303	MBD4	100	75.610	ENSPANG00000015047	MBD4	99	75.610	Papio_anubis
ENSSSCG00000033303	MBD4	94	49.129	ENSPSIG00000007892	MBD4	96	49.129	Pelodiscus_sinensis
ENSSSCG00000033303	MBD4	96	58.118	ENSPEMG00000006226	Mbd4	99	58.272	Peromyscus_maniculatus_bairdii
ENSSSCG00000033303	MBD4	90	59.615	ENSPCIG00000002276	-	98	59.615	Phascolarctos_cinereus
ENSSSCG00000033303	MBD4	83	40.659	ENSPFOG00000014471	mbd4	93	40.659	Poecilia_formosa
ENSSSCG00000033303	MBD4	100	75.610	ENSPPYG00000013417	MBD4	99	75.610	Pongo_abelii
ENSSSCG00000033303	MBD4	97	71.091	ENSPCAG00000012915	MBD4	99	71.091	Procavia_capensis
ENSSSCG00000033303	MBD4	100	78.709	ENSPVAG00000005238	MBD4	99	78.709	Pteropus_vampyrus
ENSSSCG00000033303	MBD4	100	66.667	ENSRNOG00000010919	Mbd4	100	66.667	Rattus_norvegicus
ENSSSCG00000033303	MBD4	100	75.044	ENSRBIG00000027722	MBD4	99	75.044	Rhinopithecus_bieti
ENSSSCG00000033303	MBD4	100	74.869	ENSRROG00000029136	MBD4	99	74.869	Rhinopithecus_roxellana
ENSSSCG00000033303	MBD4	100	73.380	ENSSBOG00000016810	MBD4	99	73.380	Saimiri_boliviensis_boliviensis
ENSSSCG00000033303	MBD4	95	58.152	ENSSHAG00000012953	MBD4	96	57.971	Sarcophilus_harrisii
ENSSSCG00000033303	MBD4	81	60.430	ENSSARG00000004496	-	80	60.430	Sorex_araneus
ENSSSCG00000033303	MBD4	86	51.969	ENSSPUG00000017344	MBD4	91	51.969	Sphenodon_punctatus
ENSSSCG00000033303	MBD4	53	58.333	ENSTNIG00000017927	mbd4	54	69.101	Tetraodon_nigroviridis
ENSSSCG00000033303	MBD4	78	96.000	ENSTBEG00000003041	-	71	96.000	Tupaia_belangeri
ENSSSCG00000033303	MBD4	98	81.640	ENSTTRG00000011265	MBD4	100	81.640	Tursiops_truncatus
ENSSSCG00000033303	MBD4	87	78.600	ENSUAMG00000000814	MBD4	100	78.600	Ursus_americanus
ENSSSCG00000033303	MBD4	100	77.312	ENSUMAG00000017542	MBD4	100	77.312	Ursus_maritimus
ENSSSCG00000033303	MBD4	55	97.222	ENSVPAG00000004040	-	52	97.222	Vicugna_pacos
ENSSSCG00000033303	MBD4	100	76.522	ENSVVUG00000014222	MBD4	99	76.522	Vulpes_vulpes