EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000034280 (Gene tree)
Gene ID: 100621145
Gene Symbol: LARP1B
Alias: -
Full Name: La ribonucleoprotein domain family member 1B
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 105042 bases
Position: chr8:96751303-96856344
Accession: 100621145
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000032604	La	PF05383.17	1.2e-21	1	1
ENSSSCP00000058579	La	PF05383.17	1.6e-21	1	1
ENSSSCP00000049102	La	PF05383.17	2.2e-21	1	1
ENSSSCP00000056669	La	PF05383.17	2.5e-21	1	1
ENSSSCP00000052401	La	PF05383.17	2.7e-21	1	1
ENSSSCP00000037675	La	PF05383.17	2.9e-21	1	1
ENSSSCP00000052137	La	PF05383.17	3.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000061266	LARP1B-204	3661	XM_021101597	ENSSSCP00000052137	986 (aa)	XP_020957256	A0A287B6I8
ENSSSCT00000048188	LARP1B-203	3339	-	ENSSSCP00000058579	601 (aa)	-	A0A287BR37
ENSSSCT00000042415	LARP1B-205	2986	XM_021101599	ENSSSCP00000056669	761 (aa)	XP_020957258	A0A287BJV5
ENSSSCT00000053780	LARP1B-201	4707	XM_013978892	ENSSSCP00000037675	1116 (aa)	XP_013834346	A0A287A176
ENSSSCT00000064472	LARP1B-207	1773	XM_021101603	ENSSSCP00000032604	523 (aa)	XP_020957262	A0A286ZMA5
ENSSSCT00000049359	LARP1B-206	2824	XM_013978900	ENSSSCP00000049102	707 (aa)	XP_013834354	A0A287AZ00
ENSSSCT00000054210	LARP1B-202	3907	XM_013978895	ENSSSCP00000052401	1068 (aa)	XP_013834349	A0A287B8G3

Gene Model

Click here to download ENSSSCG00000034280's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000034280's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000034280	LARP1B	99	77.320	ENSSSCG00000017069	LARP1	99	60.623

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000034280	LARP1B	99	91.753	ENSG00000138709	LARP1B	100	96.000	Homo_sapiens
ENSSSCG00000034280	LARP1B	98	78.409	ENSAPOG00000020101	larp1b	87	56.410	Acanthochromis_polyacanthus
ENSSSCG00000034280	LARP1B	98	89.062	ENSAMEG00000002748	LARP1B	98	93.313	Ailuropoda_melanoleuca
ENSSSCG00000034280	LARP1B	99	77.778	ENSACIG00000023890	larp1b	89	52.653	Amphilophus_citrinellus
ENSSSCG00000034280	LARP1B	98	78.409	ENSAOCG00000014268	larp1b	85	56.548	Amphiprion_ocellaris
ENSSSCG00000034280	LARP1B	98	77.011	ENSAPEG00000004126	larp1b	90	55.567	Amphiprion_percula
ENSSSCG00000034280	LARP1B	99	78.652	ENSATEG00000017849	larp1b	87	55.979	Anabas_testudineus
ENSSSCG00000034280	LARP1B	99	86.458	ENSAPLG00000010129	LARP1B	100	67.795	Anas_platyrhynchos
ENSSSCG00000034280	LARP1B	99	85.567	ENSACAG00000011338	LARP1B	88	76.674	Anolis_carolinensis
ENSSSCG00000034280	LARP1B	99	92.857	ENSANAG00000034618	LARP1B	96	78.485	Aotus_nancymaae
ENSSSCG00000034280	LARP1B	98	76.667	ENSACLG00000011948	larp1b	90	53.673	Astatotilapia_calliptera
ENSSSCG00000034280	LARP1B	98	85.556	ENSAMXG00000006805	larp1b	57	85.556	Astyanax_mexicanus
ENSSSCG00000034280	LARP1B	99	93.814	ENSBTAG00000012135	LARP1B	100	90.161	Bos_taurus
ENSSSCG00000034280	LARP1B	99	90.722	ENSCJAG00000003338	LARP1B	98	91.793	Callithrix_jacchus
ENSSSCG00000034280	LARP1B	99	94.845	ENSCAFG00000003831	LARP1B	100	91.186	Canis_familiaris
ENSSSCG00000034280	LARP1B	99	94.845	ENSCAFG00020018899	LARP1B	98	94.529	Canis_lupus_dingo
ENSSSCG00000034280	LARP1B	99	91.753	ENSCHIG00000023144	LARP1B	98	92.121	Capra_hircus
ENSSSCG00000034280	LARP1B	63	85.714	ENSTSYG00000002037	-	96	83.284	Carlito_syrichta
ENSSSCG00000034280	LARP1B	99	96.703	ENSCCAG00000021948	LARP1B	98	92.401	Cebus_capucinus
ENSSSCG00000034280	LARP1B	99	93.814	ENSCATG00000013541	LARP1B	100	86.761	Cercocebus_atys
ENSSSCG00000034280	LARP1B	63	87.842	ENSCLAG00000006448	-	98	87.842	Chinchilla_lanigera
ENSSSCG00000034280	LARP1B	99	92.784	ENSCSAG00000003582	LARP1B	100	87.677	Chlorocebus_sabaeus
ENSSSCG00000034280	LARP1B	99	94.845	ENSCHOG00000005354	LARP1B	100	80.262	Choloepus_hoffmanni
ENSSSCG00000034280	LARP1B	99	89.583	ENSCPBG00000017480	LARP1B	93	75.077	Chrysemys_picta_bellii
ENSSSCG00000034280	LARP1B	99	92.784	ENSCANG00000026958	LARP1B	100	83.152	Colobus_angolensis_palliatus
ENSSSCG00000034280	LARP1B	63	89.666	ENSCGRG00001004660	-	98	89.666	Cricetulus_griseus_chok1gshd
ENSSSCG00000034280	LARP1B	63	89.362	ENSCGRG00000001914	-	98	89.362	Cricetulus_griseus_crigri
ENSSSCG00000034280	LARP1B	98	80.460	ENSCSEG00000013519	larp1b	90	52.461	Cynoglossus_semilaevis
ENSSSCG00000034280	LARP1B	98	79.310	ENSCVAG00000005046	larp1b	92	53.282	Cyprinodon_variegatus
ENSSSCG00000034280	LARP1B	98	87.778	ENSDARG00000061169	larp1b	53	87.778	Danio_rerio
ENSSSCG00000034280	LARP1B	98	87.084	ENSDNOG00000018765	-	100	87.280	Dasypus_novemcinctus
ENSSSCG00000034280	LARP1B	82	87.755	ENSETEG00000012497	LARP1B	89	82.353	Echinops_telfairi
ENSSSCG00000034280	LARP1B	99	67.416	ENSEBUG00000003668	larp1b	90	51.974	Eptatretus_burgeri
ENSSSCG00000034280	LARP1B	99	93.814	ENSEASG00005018106	LARP1B	98	94.833	Equus_asinus_asinus
ENSSSCG00000034280	LARP1B	99	93.814	ENSECAG00000001088	LARP1B	100	88.799	Equus_caballus
ENSSSCG00000034280	LARP1B	71	65.741	ENSELUG00000023774	larp1b	67	76.667	Esox_lucius
ENSSSCG00000034280	LARP1B	99	89.038	ENSFCAG00000014650	-	98	93.009	Felis_catus
ENSSSCG00000034280	LARP1B	99	92.308	ENSFALG00000008098	LARP1B	100	66.774	Ficedula_albicollis
ENSSSCG00000034280	LARP1B	98	80.460	ENSFHEG00000010264	larp1b	87	53.801	Fundulus_heteroclitus
ENSSSCG00000034280	LARP1B	87	55.461	ENSGMOG00000005207	larp1b	81	55.446	Gadus_morhua
ENSSSCG00000034280	LARP1B	99	86.598	ENSGALG00000010207	LARP1B	90	68.196	Gallus_gallus
ENSSSCG00000034280	LARP1B	89	79.545	ENSGAFG00000012012	larp1b	93	59.150	Gambusia_affinis
ENSSSCG00000034280	LARP1B	99	68.817	ENSGACG00000004609	larp1b	87	54.286	Gasterosteus_aculeatus
ENSSSCG00000034280	LARP1B	99	89.583	ENSGAGG00000017209	LARP1B	94	73.532	Gopherus_agassizii
ENSSSCG00000034280	LARP1B	99	93.814	ENSGGOG00000015900	LARP1B	98	90.881	Gorilla_gorilla
ENSSSCG00000034280	LARP1B	98	76.667	ENSHBUG00000009730	larp1b	90	53.824	Haplochromis_burtoni
ENSSSCG00000034280	LARP1B	63	84.985	ENSHGLG00000006728	-	98	85.285	Heterocephalus_glaber_female
ENSSSCG00000034280	LARP1B	63	73.030	ENSHGLG00000013922	-	97	73.030	Heterocephalus_glaber_female
ENSSSCG00000034280	LARP1B	63	73.030	ENSHGLG00100016491	-	97	73.030	Heterocephalus_glaber_male
ENSSSCG00000034280	LARP1B	67	82.000	ENSHGLG00100014041	-	96	83.755	Heterocephalus_glaber_male
ENSSSCG00000034280	LARP1B	65	77.273	ENSHCOG00000000918	larp1b	96	60.951	Hippocampus_comes
ENSSSCG00000034280	LARP1B	79	84.444	ENSIPUG00000012138	larp1b	85	54.536	Ictalurus_punctatus
ENSSSCG00000034280	LARP1B	58	64.356	ENSSTOG00000033183	-	99	66.337	Ictidomys_tridecemlineatus
ENSSSCG00000034280	LARP1B	63	88.485	ENSSTOG00000008596	-	98	88.485	Ictidomys_tridecemlineatus
ENSSSCG00000034280	LARP1B	64	72.156	ENSSTOG00000034510	-	85	74.603	Ictidomys_tridecemlineatus
ENSSSCG00000034280	LARP1B	63	79.635	ENSSTOG00000021917	-	94	81.155	Ictidomys_tridecemlineatus
ENSSSCG00000034280	LARP1B	63	85.671	ENSJJAG00000022360	Larp1b	98	85.671	Jaculus_jaculus
ENSSSCG00000034280	LARP1B	98	75.000	ENSKMAG00000011589	larp1b	92	53.838	Kryptolebias_marmoratus
ENSSSCG00000034280	LARP1B	98	77.528	ENSLBEG00000005655	larp1b	88	55.306	Labrus_bergylta
ENSSSCG00000034280	LARP1B	99	88.095	ENSLACG00000015247	LARP1B	99	70.918	Latimeria_chalumnae
ENSSSCG00000034280	LARP1B	99	93.258	ENSLOCG00000010684	larp1b	96	65.884	Lepisosteus_oculatus
ENSSSCG00000034280	LARP1B	63	92.705	ENSLAFG00000008473	-	98	92.705	Loxodonta_africana
ENSSSCG00000034280	LARP1B	99	93.814	ENSMFAG00000002218	LARP1B	98	91.489	Macaca_fascicularis
ENSSSCG00000034280	LARP1B	99	93.814	ENSMMUG00000021347	LARP1B	98	91.489	Macaca_mulatta
ENSSSCG00000034280	LARP1B	86	93.814	ENSMNEG00000030406	LARP1B	100	85.833	Macaca_nemestrina
ENSSSCG00000034280	LARP1B	99	93.814	ENSMLEG00000009306	LARP1B	100	84.792	Mandrillus_leucophaeus
ENSSSCG00000034280	LARP1B	99	77.273	ENSMAMG00000000081	larp1b	91	55.214	Mastacembelus_armatus
ENSSSCG00000034280	LARP1B	67	76.667	ENSMZEG00005002545	larp1b	98	59.292	Maylandia_zebra
ENSSSCG00000034280	LARP1B	99	90.110	ENSMGAG00000004809	LARP1B	100	62.719	Meleagris_gallopavo
ENSSSCG00000034280	LARP1B	63	88.754	ENSMAUG00000007879	-	98	88.754	Mesocricetus_auratus
ENSSSCG00000034280	LARP1B	99	94.845	ENSMICG00000036111	LARP1B	100	92.035	Microcebus_murinus
ENSSSCG00000034280	LARP1B	63	78.248	ENSMICG00000037883	-	90	78.248	Microcebus_murinus
ENSSSCG00000034280	LARP1B	98	67.647	ENSMICG00000028052	-	99	68.047	Microcebus_murinus
ENSSSCG00000034280	LARP1B	55	83.737	ENSMOCG00000001490	Larp1b	93	91.829	Microtus_ochrogaster
ENSSSCG00000034280	LARP1B	99	91.753	ENSMODG00000012300	LARP1B	97	77.367	Monodelphis_domestica
ENSSSCG00000034280	LARP1B	99	78.409	ENSMALG00000003638	larp1b	90	54.663	Monopterus_albus
ENSSSCG00000034280	LARP1B	67	85.470	MGP_CAROLIEiJ_G0024962	Larp1b	98	87.538	Mus_caroli
ENSSSCG00000034280	LARP1B	74	79.926	ENSMUSG00000025762	Larp1b	98	88.754	Mus_musculus
ENSSSCG00000034280	LARP1B	65	86.391	MGP_PahariEiJ_G0026403	Larp1b	98	87.842	Mus_pahari
ENSSSCG00000034280	LARP1B	64	88.131	MGP_SPRETEiJ_G0025897	Larp1b	98	88.754	Mus_spretus
ENSSSCG00000034280	LARP1B	99	93.814	ENSMPUG00000017365	LARP1B	100	87.545	Mustela_putorius_furo
ENSSSCG00000034280	LARP1B	99	89.691	ENSMLUG00000010229	LARP1B	100	84.432	Myotis_lucifugus
ENSSSCG00000034280	LARP1B	82	76.667	ENSNBRG00000023846	larp1b	87	53.883	Neolamprologus_brichardi
ENSSSCG00000034280	LARP1B	99	91.837	ENSNLEG00000013819	LARP1B	98	90.578	Nomascus_leucogenys
ENSSSCG00000034280	LARP1B	80	91.753	ENSMEUG00000010308	LARP1B	88	81.905	Notamacropus_eugenii
ENSSSCG00000034280	LARP1B	99	70.103	ENSOPRG00000005478	LARP1B	99	71.397	Ochotona_princeps
ENSSSCG00000034280	LARP1B	63	88.146	ENSODEG00000001292	-	98	88.146	Octodon_degus
ENSSSCG00000034280	LARP1B	98	76.667	ENSONIG00000012386	larp1b	99	54.779	Oreochromis_niloticus
ENSSSCG00000034280	LARP1B	99	88.660	ENSOCUG00000013330	LARP1B	100	88.139	Oryctolagus_cuniculus
ENSSSCG00000034280	LARP1B	98	76.404	ENSORLG00000017954	larp1b	89	53.769	Oryzias_latipes
ENSSSCG00000034280	LARP1B	98	76.404	ENSORLG00020013081	larp1b	89	53.568	Oryzias_latipes_hni
ENSSSCG00000034280	LARP1B	98	76.404	ENSORLG00015009580	larp1b	89	54.188	Oryzias_latipes_hsok
ENSSSCG00000034280	LARP1B	98	77.528	ENSOMEG00000004210	larp1b	84	56.056	Oryzias_melastigma
ENSSSCG00000034280	LARP1B	99	93.814	ENSOGAG00000005771	LARP1B	100	88.348	Otolemur_garnettii
ENSSSCG00000034280	LARP1B	99	91.753	ENSOARG00000015300	LARP1B	100	89.083	Ovis_aries
ENSSSCG00000034280	LARP1B	99	93.814	ENSPPAG00000030439	LARP1B	98	90.578	Pan_paniscus
ENSSSCG00000034280	LARP1B	99	89.423	ENSPPRG00000002743	-	98	93.009	Panthera_pardus
ENSSSCG00000034280	LARP1B	99	89.423	ENSPTIG00000011225	LARP1B	98	93.009	Panthera_tigris_altaica
ENSSSCG00000034280	LARP1B	99	92.784	ENSPTRG00000016437	LARP1B	98	90.274	Pan_troglodytes
ENSSSCG00000034280	LARP1B	99	93.814	ENSPANG00000012488	LARP1B	98	91.793	Papio_anubis
ENSSSCG00000034280	LARP1B	89	69.072	ENSPKIG00000014360	larp1b	95	51.717	Paramormyrops_kingsleyae
ENSSSCG00000034280	LARP1B	99	88.660	ENSPSIG00000012885	LARP1B	99	76.026	Pelodiscus_sinensis
ENSSSCG00000034280	LARP1B	68	76.667	ENSPMGG00000007207	larp1b	84	60.674	Periophthalmus_magnuspinnatus
ENSSSCG00000034280	LARP1B	98	74.444	ENSPMAG00000002700	larp1b	97	53.822	Petromyzon_marinus
ENSSSCG00000034280	LARP1B	99	91.753	ENSPCIG00000026516	LARP1B	100	84.901	Phascolarctos_cinereus
ENSSSCG00000034280	LARP1B	98	80.460	ENSPFOG00000019519	larp1b	87	54.427	Poecilia_formosa
ENSSSCG00000034280	LARP1B	97	50.000	ENSPFOG00000022837	-	85	48.167	Poecilia_formosa
ENSSSCG00000034280	LARP1B	98	80.460	ENSPLAG00000007115	larp1b	87	55.475	Poecilia_latipinna
ENSSSCG00000034280	LARP1B	98	80.460	ENSPMEG00000001224	larp1b	86	55.673	Poecilia_mexicana
ENSSSCG00000034280	LARP1B	51	54.225	ENSPREG00000005955	-	89	54.930	Poecilia_reticulata
ENSSSCG00000034280	LARP1B	99	90.722	ENSPCAG00000007546	LARP1B	100	84.498	Procavia_capensis
ENSSSCG00000034280	LARP1B	99	88.632	ENSPCOG00000021874	LARP1B	98	92.988	Propithecus_coquereli
ENSSSCG00000034280	LARP1B	99	97.802	ENSPVAG00000005373	LARP1B	100	83.518	Pteropus_vampyrus
ENSSSCG00000034280	LARP1B	67	76.667	ENSPNYG00000017357	larp1b	98	58.987	Pundamilia_nyererei
ENSSSCG00000034280	LARP1B	99	84.615	ENSPNAG00000008823	larp1b	86	56.455	Pygocentrus_nattereri
ENSSSCG00000034280	LARP1B	63	89.970	ENSRNOG00000038366	Larp1b	98	89.970	Rattus_norvegicus
ENSSSCG00000034280	LARP1B	63	81.763	ENSRBIG00000038568	-	90	81.763	Rhinopithecus_bieti
ENSSSCG00000034280	LARP1B	99	85.742	ENSRBIG00000039982	-	98	88.754	Rhinopithecus_bieti
ENSSSCG00000034280	LARP1B	63	73.860	ENSRROG00000038525	-	94	73.860	Rhinopithecus_roxellana
ENSSSCG00000034280	LARP1B	99	93.814	ENSRROG00000030771	LARP1B	98	91.489	Rhinopithecus_roxellana
ENSSSCG00000034280	LARP1B	98	84.436	ENSSHAG00000014474	LARP1B	99	83.508	Sarcophilus_harrisii
ENSSSCG00000034280	LARP1B	98	78.652	ENSSMAG00000006347	larp1b	94	55.266	Scophthalmus_maximus
ENSSSCG00000034280	LARP1B	99	78.889	ENSSDUG00000004182	larp1b	89	54.527	Seriola_dumerili
ENSSSCG00000034280	LARP1B	72	77.778	ENSSLDG00000014613	larp1b	89	57.944	Seriola_lalandi_dorsalis
ENSSSCG00000034280	LARP1B	95	90.110	ENSSPUG00000011837	LARP1B	99	67.116	Sphenodon_punctatus
ENSSSCG00000034280	LARP1B	98	78.652	ENSSPAG00000017772	larp1b	84	57.311	Stegastes_partitus
ENSSSCG00000034280	LARP1B	97	90.110	ENSTGUG00000002098	-	97	65.865	Taeniopygia_guttata
ENSSSCG00000034280	LARP1B	97	77.907	ENSTRUG00000005612	larp1b	87	53.505	Takifugu_rubripes
ENSSSCG00000034280	LARP1B	98	77.011	ENSTNIG00000012398	larp1b	99	53.503	Tetraodon_nigroviridis
ENSSSCG00000034280	LARP1B	74	94.340	ENSTBEG00000004177	LARP1B	88	87.619	Tupaia_belangeri
ENSSSCG00000034280	LARP1B	94	98.113	ENSTTRG00000012984	LARP1B	100	80.874	Tursiops_truncatus
ENSSSCG00000034280	LARP1B	63	83.283	ENSUAMG00000016938	-	98	83.067	Ursus_americanus
ENSSSCG00000034280	LARP1B	99	95.876	ENSUMAG00000007373	LARP1B	100	89.989	Ursus_maritimus
ENSSSCG00000034280	LARP1B	91	90.698	ENSVPAG00000007223	LARP1B	100	78.414	Vicugna_pacos
ENSSSCG00000034280	LARP1B	99	94.845	ENSVVUG00000011307	LARP1B	100	91.077	Vulpes_vulpes
ENSSSCG00000034280	LARP1B	99	85.567	ENSXETG00000022512	larp1b	94	58.614	Xenopus_tropicalis
ENSSSCG00000034280	LARP1B	62	80.460	ENSXCOG00000004435	larp1b	69	60.968	Xiphophorus_couchianus
ENSSSCG00000034280	LARP1B	98	80.460	ENSXMAG00000008150	larp1b	87	54.108	Xiphophorus_maculatus