EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000034373 (Gene tree)
Gene ID: 100624184
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 88983 bases
Position: chr12:3845946-3934928
Accession: 100624184
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000032574	Ago_hook	PF10427.9	9.1e-20	1	1
ENSSSCP00000040633	Ago_hook	PF10427.9	2.7e-19	1	1
ENSSSCP00000045333	Ago_hook	PF10427.9	3e-19	1	1
ENSSSCP00000048342	Ago_hook	PF10427.9	6.3e-19	1	1
ENSSSCP00000038345	Ago_hook	PF10427.9	1.7e-08	1	1
ENSSSCP00000045333	RRM_1	PF00076.22	0.00035	1	1
ENSSSCP00000038345	RRM_1	PF00076.22	0.00036	1	1
ENSSSCP00000032574	RRM_1	PF00076.22	0.00036	1	1
ENSSSCP00000048342	RRM_1	PF00076.22	0.00037	1	1
ENSSSCP00000040633	RRM_1	PF00076.22	0.00038	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000039841	TNRC6C-205	5055	XM_021066533	ENSSSCP00000048342	1684 (aa)	XP_020922192	A0A287AW40
ENSSSCT00000050897	TNRC6C-201	9454	XM_021066531	ENSSSCP00000040633	1722 (aa)	XP_020922190	A0A287A9L2
ENSSSCT00000057633	TNRC6C-204	5498	XM_021066535	ENSSSCP00000038345	1650 (aa)	XP_020922194	A0A287A3M2
ENSSSCT00000044644	TNRC6C-203	5567	XM_021066532	ENSSSCP00000032574	1673 (aa)	XP_020922191	A0A286ZLS1
ENSSSCT00000064757	TNRC6C-202	6354	XM_021066536	ENSSSCP00000045333	1623 (aa)	XP_020922195	A0A287AN32

Gene Model

Click here to download ENSSSCG00000034373's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000034373's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000034373	TNRC6C	98	50.791	ENSSSCG00000038870	TNRC6A	93	50.396
ENSSSCG00000034373	TNRC6C	93	43.818	ENSSSCG00000000078	TNRC6B	81	37.760

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000034373	TNRC6C	100	87.987	ENSG00000078687	TNRC6C	97	90.951	Homo_sapiens
ENSSSCG00000034373	TNRC6C	79	68.102	ENSAPOG00000019749	tnrc6c1	90	63.766	Acanthochromis_polyacanthus
ENSSSCG00000034373	TNRC6C	100	92.407	ENSAMEG00000013756	TNRC6C	96	83.963	Ailuropoda_melanoleuca
ENSSSCG00000034373	TNRC6C	94	67.250	ENSACIG00000008075	tnrc6c1	90	67.757	Amphilophus_citrinellus
ENSSSCG00000034373	TNRC6C	77	69.032	ENSAOCG00000023968	tnrc6c1	91	50.326	Amphiprion_ocellaris
ENSSSCG00000034373	TNRC6C	80	53.862	ENSAPEG00000009020	tnrc6c1	91	50.800	Amphiprion_percula
ENSSSCG00000034373	TNRC6C	100	88.122	ENSAPLG00000005456	TNRC6C	86	86.838	Anas_platyrhynchos
ENSSSCG00000034373	TNRC6C	100	88.618	ENSACAG00000016198	TNRC6C	85	87.486	Anolis_carolinensis
ENSSSCG00000034373	TNRC6C	100	87.825	ENSANAG00000021554	TNRC6C	100	85.444	Aotus_nancymaae
ENSSSCG00000034373	TNRC6C	81	69.120	ENSACLG00000000424	tnrc6c1	78	64.348	Astatotilapia_calliptera
ENSSSCG00000034373	TNRC6C	100	92.649	ENSBTAG00000018658	TNRC6C	96	92.575	Bos_taurus
ENSSSCG00000034373	TNRC6C	100	87.662	ENSCJAG00000019431	TNRC6C	100	85.385	Callithrix_jacchus
ENSSSCG00000034373	TNRC6C	100	92.846	ENSCAFG00000005224	TNRC6C	86	93.264	Canis_familiaris
ENSSSCG00000034373	TNRC6C	100	93.008	ENSCAFG00020006661	TNRC6C	100	86.299	Canis_lupus_dingo
ENSSSCG00000034373	TNRC6C	100	92.520	ENSCHIG00000026004	TNRC6C	100	87.651	Capra_hircus
ENSSSCG00000034373	TNRC6C	100	86.029	ENSTSYG00000005403	TNRC6C	96	92.111	Carlito_syrichta
ENSSSCG00000034373	TNRC6C	100	80.000	ENSCAPG00000007307	TNRC6C	89	78.736	Cavia_aperea
ENSSSCG00000034373	TNRC6C	100	87.154	ENSCPOG00000000467	TNRC6C	97	84.095	Cavia_porcellus
ENSSSCG00000034373	TNRC6C	100	88.149	ENSCCAG00000030524	TNRC6C	97	91.065	Cebus_capucinus
ENSSSCG00000034373	TNRC6C	100	87.987	ENSCATG00000033135	TNRC6C	97	90.722	Cercocebus_atys
ENSSSCG00000034373	TNRC6C	100	88.130	ENSCLAG00000011139	TNRC6C	89	86.062	Chinchilla_lanigera
ENSSSCG00000034373	TNRC6C	100	85.516	ENSCSAG00000005167	TNRC6C	86	90.722	Chlorocebus_sabaeus
ENSSSCG00000034373	TNRC6C	75	89.076	ENSCHOG00000000088	TNRC6C	68	89.076	Choloepus_hoffmanni
ENSSSCG00000034373	TNRC6C	100	85.981	ENSCPBG00000027960	TNRC6C	100	81.764	Chrysemys_picta_bellii
ENSSSCG00000034373	TNRC6C	100	88.149	ENSCANG00000041771	TNRC6C	97	90.836	Colobus_angolensis_palliatus
ENSSSCG00000034373	TNRC6C	100	83.894	ENSCGRG00001022686	Tnrc6c	100	82.586	Cricetulus_griseus_chok1gshd
ENSSSCG00000034373	TNRC6C	100	84.292	ENSCGRG00000018041	Tnrc6c	100	82.586	Cricetulus_griseus_crigri
ENSSSCG00000034373	TNRC6C	80	53.097	ENSCSEG00000012744	tnrc6c1	80	61.512	Cynoglossus_semilaevis
ENSSSCG00000034373	TNRC6C	100	70.365	ENSDARG00000076847	tnrc6c1	93	60.906	Danio_rerio
ENSSSCG00000034373	TNRC6C	100	91.220	ENSDNOG00000003247	TNRC6C	88	89.437	Dasypus_novemcinctus
ENSSSCG00000034373	TNRC6C	100	81.711	ENSDORG00000004558	Tnrc6c	100	80.590	Dipodomys_ordii
ENSSSCG00000034373	TNRC6C	90	81.446	ENSETEG00000005527	TNRC6C	87	81.446	Echinops_telfairi
ENSSSCG00000034373	TNRC6C	100	88.618	ENSEASG00005004799	TNRC6C	100	87.537	Equus_asinus_asinus
ENSSSCG00000034373	TNRC6C	100	88.618	ENSECAG00000012486	TNRC6C	87	91.858	Equus_caballus
ENSSSCG00000034373	TNRC6C	96	85.411	ENSEEUG00000010008	TNRC6C	93	84.488	Erinaceus_europaeus
ENSSSCG00000034373	TNRC6C	100	91.707	ENSFCAG00000028358	TNRC6C	100	86.399	Felis_catus
ENSSSCG00000034373	TNRC6C	100	88.655	ENSFALG00000000848	TNRC6C	95	87.358	Ficedula_albicollis
ENSSSCG00000034373	TNRC6C	100	87.480	ENSFDAG00000010368	TNRC6C	97	85.460	Fukomys_damarensis
ENSSSCG00000034373	TNRC6C	80	52.879	ENSFHEG00000002936	tnrc6c1	92	46.128	Fundulus_heteroclitus
ENSSSCG00000034373	TNRC6C	100	88.943	ENSGALG00000001725	TNRC6C	100	81.732	Gallus_gallus
ENSSSCG00000034373	TNRC6C	97	49.457	ENSGAFG00000019019	tnrc6c1	94	56.660	Gambusia_affinis
ENSSSCG00000034373	TNRC6C	80	53.868	ENSGACG00000012320	tnrc6c1	87	49.539	Gasterosteus_aculeatus
ENSSSCG00000034373	TNRC6C	100	88.780	ENSGAGG00000022043	TNRC6C	92	87.819	Gopherus_agassizii
ENSSSCG00000034373	TNRC6C	100	91.586	ENSGGOG00000011304	TNRC6C	97	90.618	Gorilla_gorilla
ENSSSCG00000034373	TNRC6C	81	69.120	ENSHBUG00000010846	tnrc6c1	78	64.348	Haplochromis_burtoni
ENSSSCG00000034373	TNRC6C	100	87.805	ENSHGLG00000004809	TNRC6C	89	86.002	Heterocephalus_glaber_female
ENSSSCG00000034373	TNRC6C	100	86.179	ENSHGLG00100012597	TNRC6C	89	85.360	Heterocephalus_glaber_male
ENSSSCG00000034373	TNRC6C	100	68.246	ENSIPUG00000000818	tnrc6c1	69	64.723	Ictalurus_punctatus
ENSSSCG00000034373	TNRC6C	100	87.500	ENSSTOG00000009101	TNRC6C	97	85.317	Ictidomys_tridecemlineatus
ENSSSCG00000034373	TNRC6C	100	83.540	ENSJJAG00000017055	Tnrc6c	89	83.068	Jaculus_jaculus
ENSSSCG00000034373	TNRC6C	100	48.338	ENSKMAG00000021023	tnrc6c1	97	50.711	Kryptolebias_marmoratus
ENSSSCG00000034373	TNRC6C	100	70.447	ENSLACG00000015283	TNRC6C	97	70.270	Latimeria_chalumnae
ENSSSCG00000034373	TNRC6C	97	76.640	ENSLOCG00000013377	tnrc6c1	85	76.973	Lepisosteus_oculatus
ENSSSCG00000034373	TNRC6C	100	86.645	ENSLAFG00000011122	TNRC6C	96	80.723	Loxodonta_africana
ENSSSCG00000034373	TNRC6C	100	87.987	ENSMFAG00000043943	TNRC6C	97	90.836	Macaca_fascicularis
ENSSSCG00000034373	TNRC6C	100	87.987	ENSMMUG00000011924	TNRC6C	100	85.799	Macaca_mulatta
ENSSSCG00000034373	TNRC6C	100	87.987	ENSMNEG00000030405	TNRC6C	100	85.740	Macaca_nemestrina
ENSSSCG00000034373	TNRC6C	100	87.987	ENSMLEG00000033436	TNRC6C	97	90.722	Mandrillus_leucophaeus
ENSSSCG00000034373	TNRC6C	88	53.686	ENSMAMG00000023613	tnrc6c1	97	50.346	Mastacembelus_armatus
ENSSSCG00000034373	TNRC6C	81	69.120	ENSMZEG00005010920	tnrc6c1	78	64.348	Maylandia_zebra
ENSSSCG00000034373	TNRC6C	100	73.807	ENSMGAG00000003906	TNRC6C	90	72.779	Meleagris_gallopavo
ENSSSCG00000034373	TNRC6C	100	83.540	ENSMAUG00000021618	Tnrc6c	100	83.481	Mesocricetus_auratus
ENSSSCG00000034373	TNRC6C	100	88.149	ENSMICG00000003952	TNRC6C	97	90.722	Microcebus_murinus
ENSSSCG00000034373	TNRC6C	100	85.003	ENSMOCG00000015879	Tnrc6c	97	84.766	Microtus_ochrogaster
ENSSSCG00000034373	TNRC6C	79	55.876	ENSMMOG00000005203	tnrc6c1	98	50.373	Mola_mola
ENSSSCG00000034373	TNRC6C	100	80.542	ENSMODG00000001785	TNRC6C	86	84.332	Monodelphis_domestica
ENSSSCG00000034373	TNRC6C	100	84.884	MGP_CAROLIEiJ_G0017465	Tnrc6c	97	84.647	Mus_caroli
ENSSSCG00000034373	TNRC6C	100	84.647	ENSMUSG00000025571	Tnrc6c	97	84.410	Mus_musculus
ENSSSCG00000034373	TNRC6C	100	84.944	MGP_PahariEiJ_G0018593	Tnrc6c	97	84.707	Mus_pahari
ENSSSCG00000034373	TNRC6C	100	84.647	MGP_SPRETEiJ_G0018309	Tnrc6c	97	84.410	Mus_spretus
ENSSSCG00000034373	TNRC6C	100	92.033	ENSMPUG00000013348	TNRC6C	85	92.451	Mustela_putorius_furo
ENSSSCG00000034373	TNRC6C	100	83.016	ENSMLUG00000014431	TNRC6C	87	84.921	Myotis_lucifugus
ENSSSCG00000034373	TNRC6C	100	84.179	ENSNGAG00000012203	Tnrc6c	89	83.766	Nannospalax_galili
ENSSSCG00000034373	TNRC6C	81	69.120	ENSNBRG00000005344	tnrc6c1	78	63.873	Neolamprologus_brichardi
ENSSSCG00000034373	TNRC6C	100	82.872	ENSNLEG00000000047	TNRC6C	89	82.584	Nomascus_leucogenys
ENSSSCG00000034373	TNRC6C	96	80.261	ENSMEUG00000005104	TNRC6C	97	73.742	Notamacropus_eugenii
ENSSSCG00000034373	TNRC6C	100	87.480	ENSODEG00000012499	TNRC6C	100	84.866	Octodon_degus
ENSSSCG00000034373	TNRC6C	94	66.147	ENSONIG00000002210	tnrc6c1	91	65.854	Oreochromis_niloticus
ENSSSCG00000034373	TNRC6C	99	81.107	ENSOANG00000009758	-	90	70.897	Ornithorhynchus_anatinus
ENSSSCG00000034373	TNRC6C	82	78.850	ENSOCUG00000006122	TNRC6C	83	78.808	Oryctolagus_cuniculus
ENSSSCG00000034373	TNRC6C	91	50.184	ENSORLG00000009837	tnrc6c1	100	68.773	Oryzias_latipes
ENSSSCG00000034373	TNRC6C	92	49.223	ENSORLG00020016510	tnrc6c1	99	48.027	Oryzias_latipes_hni
ENSSSCG00000034373	TNRC6C	72	44.688	ENSORLG00015000171	tnrc6c1	98	43.234	Oryzias_latipes_hsok
ENSSSCG00000034373	TNRC6C	92	49.670	ENSOMEG00000000357	tnrc6c1	94	50.858	Oryzias_melastigma
ENSSSCG00000034373	TNRC6C	100	92.208	ENSOGAG00000007197	TNRC6C	97	87.743	Otolemur_garnettii
ENSSSCG00000034373	TNRC6C	96	86.633	ENSOARG00000006041	TNRC6C	87	86.758	Ovis_aries
ENSSSCG00000034373	TNRC6C	100	87.987	ENSPPAG00000027160	TNRC6C	97	90.951	Pan_paniscus
ENSSSCG00000034373	TNRC6C	100	91.870	ENSPPRG00000018881	TNRC6C	100	86.458	Panthera_pardus
ENSSSCG00000034373	TNRC6C	90	75.901	ENSPTIG00000008791	TNRC6C	83	75.231	Panthera_tigris_altaica
ENSSSCG00000034373	TNRC6C	100	87.987	ENSPTRG00000009699	TNRC6C	97	90.951	Pan_troglodytes
ENSSSCG00000034373	TNRC6C	100	86.129	ENSPANG00000019994	TNRC6C	100	85.951	Papio_anubis
ENSSSCG00000034373	TNRC6C	96	61.876	ENSPKIG00000005428	tnrc6c1	92	62.875	Paramormyrops_kingsleyae
ENSSSCG00000034373	TNRC6C	100	84.691	ENSPSIG00000018069	TNRC6C	94	84.901	Pelodiscus_sinensis
ENSSSCG00000034373	TNRC6C	73	56.780	ENSPMGG00000022911	tnrc6c1	97	64.082	Periophthalmus_magnuspinnatus
ENSSSCG00000034373	TNRC6C	100	84.189	ENSPEMG00000009785	Tnrc6c	100	80.933	Peromyscus_maniculatus_bairdii
ENSSSCG00000034373	TNRC6C	60	75.437	ENSPCIG00000017421	-	94	83.178	Phascolarctos_cinereus
ENSSSCG00000034373	TNRC6C	97	49.030	ENSPFOG00000012560	tnrc6c1	97	54.665	Poecilia_formosa
ENSSSCG00000034373	TNRC6C	97	49.087	ENSPLAG00000021055	tnrc6c1	94	56.703	Poecilia_latipinna
ENSSSCG00000034373	TNRC6C	100	85.747	ENSPPYG00000008679	TNRC6C	85	91.180	Pongo_abelii
ENSSSCG00000034373	TNRC6C	93	92.180	ENSPCAG00000012510	TNRC6C	91	92.180	Procavia_capensis
ENSSSCG00000034373	TNRC6C	100	88.474	ENSPCOG00000021451	TNRC6C	97	91.180	Propithecus_coquereli
ENSSSCG00000034373	TNRC6C	96	95.763	ENSPVAG00000002008	TNRC6C	93	95.763	Pteropus_vampyrus
ENSSSCG00000034373	TNRC6C	82	51.534	ENSPNYG00000014477	tnrc6c1	84	47.308	Pundamilia_nyererei
ENSSSCG00000034373	TNRC6C	100	84.073	ENSRNOG00000022395	Tnrc6c	100	83.955	Rattus_norvegicus
ENSSSCG00000034373	TNRC6C	100	88.149	ENSRBIG00000027777	TNRC6C	97	90.951	Rhinopithecus_bieti
ENSSSCG00000034373	TNRC6C	100	88.149	ENSRROG00000042912	TNRC6C	97	90.951	Rhinopithecus_roxellana
ENSSSCG00000034373	TNRC6C	100	85.168	ENSSBOG00000023981	TNRC6C	97	90.722	Saimiri_boliviensis_boliviensis
ENSSSCG00000034373	TNRC6C	53	86.782	ENSSHAG00000018330	-	100	86.674	Sarcophilus_harrisii
ENSSSCG00000034373	TNRC6C	77	47.619	ENSSFOG00015004735	-	99	61.257	Scleropages_formosus
ENSSSCG00000034373	TNRC6C	74	61.165	ENSSFOG00015006475	tnrc6c1	91	52.834	Scleropages_formosus
ENSSSCG00000034373	TNRC6C	98	48.420	ENSSMAG00000012761	tnrc6c1	99	60.920	Scophthalmus_maximus
ENSSSCG00000034373	TNRC6C	96	55.556	ENSSDUG00000002366	tnrc6c1	86	59.320	Seriola_dumerili
ENSSSCG00000034373	TNRC6C	96	53.975	ENSSLDG00000025613	tnrc6c1	92	59.114	Seriola_lalandi_dorsalis
ENSSSCG00000034373	TNRC6C	91	94.118	ENSSARG00000006816	TNRC6C	88	94.118	Sorex_araneus
ENSSSCG00000034373	TNRC6C	82	88.130	ENSSPUG00000007341	TNRC6C	87	86.682	Sphenodon_punctatus
ENSSSCG00000034373	TNRC6C	79	53.352	ENSSPAG00000014977	tnrc6c1	90	50.029	Stegastes_partitus
ENSSSCG00000034373	TNRC6C	100	84.878	ENSTGUG00000007733	TNRC6C	94	85.383	Taeniopygia_guttata
ENSSSCG00000034373	TNRC6C	79	53.986	ENSTRUG00000011685	tnrc6c1	78	55.959	Takifugu_rubripes
ENSSSCG00000034373	TNRC6C	79	60.754	ENSTNIG00000005273	tnrc6c1	95	68.790	Tetraodon_nigroviridis
ENSSSCG00000034373	TNRC6C	64	88.281	ENSTBEG00000005046	TNRC6C	97	78.494	Tupaia_belangeri
ENSSSCG00000034373	TNRC6C	100	89.739	ENSTTRG00000010828	TNRC6C	97	88.218	Tursiops_truncatus
ENSSSCG00000034373	TNRC6C	100	87.760	ENSUMAG00000013614	TNRC6C	90	84.496	Ursus_maritimus
ENSSSCG00000034373	TNRC6C	52	82.763	ENSVPAG00000006765	-	100	82.763	Vicugna_pacos
ENSSSCG00000034373	TNRC6C	100	89.088	ENSVVUG00000015268	TNRC6C	100	87.604	Vulpes_vulpes
ENSSSCG00000034373	TNRC6C	100	79.126	ENSXETG00000019470	tnrc6c	96	78.844	Xenopus_tropicalis
ENSSSCG00000034373	TNRC6C	97	50.799	ENSXMAG00000025971	tnrc6c1	94	56.660	Xiphophorus_maculatus