EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000034927 (Gene tree)
Gene ID: 110260088
Gene Symbol: -
Alias: -
Full Name: eukaryotic translation initiation factor 3 subunit C
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 21883 bases
Position: chr3:18467779-18489661
Accession: 110260088
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000033289	eIF-3c_N	PF05470.12	7.4e-272	1	1
ENSSSCP00000031561	eIF-3c_N	PF05470.12	8e-272	1	1
ENSSSCP00000048224	eIF-3c_N	PF05470.12	8e-272	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000038834	-	3584	-	ENSSSCP00000031561	913 (aa)	-	A0A287AVR0
ENSSSCT00000042551	-	3593	-	ENSSSCP00000033289	945 (aa)	-	A0A286ZP85
ENSSSCT00000043632	-	2944	XM_021088039	ENSSSCP00000048224	913 (aa)	XP_020943698	A0A287AVR0

Gene Model

Click here to download ENSSSCG00000034927's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000034927's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000034927	-	100	98.686	ENSG00000184110	EIF3C	100	100.000	Homo_sapiens
ENSSSCG00000034927	-	100	98.578	ENSG00000205609	EIF3CL	100	98.578	Homo_sapiens
ENSSSCG00000034927	-	99	76.056	ENSAPOG00000024092	eif3c	92	84.013	Acanthochromis_polyacanthus
ENSSSCG00000034927	-	100	99.124	ENSAMEG00000015454	-	100	99.124	Ailuropoda_melanoleuca
ENSSSCG00000034927	-	99	73.487	ENSACIG00000015082	eif3c	93	83.555	Amphilophus_citrinellus
ENSSSCG00000034927	-	94	83.828	ENSAOCG00000021466	eif3c	94	83.828	Amphiprion_ocellaris
ENSSSCG00000034927	-	94	83.828	ENSAPEG00000010521	eif3c	94	83.828	Amphiprion_percula
ENSSSCG00000034927	-	99	76.273	ENSATEG00000019001	eif3c	98	76.087	Anabas_testudineus
ENSSSCG00000034927	-	100	86.245	ENSACAG00000005937	-	100	85.917	Anolis_carolinensis
ENSSSCG00000034927	-	100	98.576	ENSANAG00000020640	-	100	98.576	Aotus_nancymaae
ENSSSCG00000034927	-	84	83.140	ENSACLG00000009347	eif3c	89	83.527	Astatotilapia_calliptera
ENSSSCG00000034927	-	84	80.293	ENSACLG00000009322	eif3c	92	80.293	Astatotilapia_calliptera
ENSSSCG00000034927	-	99	76.264	ENSAMXG00000020949	eif3c	98	76.092	Astyanax_mexicanus
ENSSSCG00000034927	-	100	98.467	ENSBTAG00000006543	EIF3CL	100	98.467	Bos_taurus
ENSSSCG00000034927	-	95	42.489	WBGene00001226	eif-3.C	66	46.916	Caenorhabditis_elegans
ENSSSCG00000034927	-	100	98.357	ENSCJAG00000006341	-	100	98.357	Callithrix_jacchus
ENSSSCG00000034927	-	100	99.014	ENSCAFG00000017143	-	100	99.014	Canis_familiaris
ENSSSCG00000034927	-	100	99.124	ENSCAFG00020017587	-	100	99.124	Canis_lupus_dingo
ENSSSCG00000034927	-	100	98.576	ENSCHIG00000024795	-	100	98.576	Capra_hircus
ENSSSCG00000034927	-	100	98.138	ENSTSYG00000003486	-	100	98.138	Carlito_syrichta
ENSSSCG00000034927	-	96	89.015	ENSCAPG00000015887	-	100	88.901	Cavia_aperea
ENSSSCG00000034927	-	100	98.467	ENSCPOG00000007533	-	100	98.467	Cavia_porcellus
ENSSSCG00000034927	-	99	83.370	ENSCCAG00000029099	-	99	81.648	Cebus_capucinus
ENSSSCG00000034927	-	100	97.481	ENSCCAG00000034928	-	100	97.481	Cebus_capucinus
ENSSSCG00000034927	-	100	93.209	ENSCCAG00000027724	-	100	92.442	Cebus_capucinus
ENSSSCG00000034927	-	100	98.576	ENSCATG00000032673	-	100	98.576	Cercocebus_atys
ENSSSCG00000034927	-	100	97.919	ENSCLAG00000011094	-	100	97.919	Chinchilla_lanigera
ENSSSCG00000034927	-	100	98.576	ENSCSAG00000006297	-	100	98.576	Chlorocebus_sabaeus
ENSSSCG00000034927	-	56	81.853	ENSCHOG00000003120	-	88	81.853	Choloepus_hoffmanni
ENSSSCG00000034927	-	80	75.810	ENSCPBG00000012407	-	94	79.079	Chrysemys_picta_bellii
ENSSSCG00000034927	-	79	56.507	ENSCSAVG00000006744	-	90	57.391	Ciona_savignyi
ENSSSCG00000034927	-	100	98.576	ENSCANG00000033626	-	100	98.576	Colobus_angolensis_palliatus
ENSSSCG00000034927	-	100	97.481	ENSCGRG00001015265	EIF3C	100	97.481	Cricetulus_griseus_chok1gshd
ENSSSCG00000034927	-	100	74.454	ENSCSEG00000017770	eif3c	100	74.236	Cynoglossus_semilaevis
ENSSSCG00000034927	-	99	75.272	ENSCVAG00000005402	eif3c	98	75.708	Cyprinodon_variegatus
ENSSSCG00000034927	-	99	76.035	ENSDARG00000016443	eif3c	98	75.843	Danio_rerio
ENSSSCG00000034927	-	100	98.686	ENSDNOG00000031497	-	100	98.686	Dasypus_novemcinctus
ENSSSCG00000034927	-	100	98.576	ENSDORG00000016471	Eif3c	100	98.576	Dipodomys_ordii
ENSSSCG00000034927	-	98	50.998	FBgn0034258	eIF3c	63	57.288	Drosophila_melanogaster
ENSSSCG00000034927	-	92	98.624	ENSETEG00000013527	-	92	98.624	Echinops_telfairi
ENSSSCG00000034927	-	99	62.995	ENSEBUG00000001629	eif3c	99	63.186	Eptatretus_burgeri
ENSSSCG00000034927	-	100	99.014	ENSECAG00000008746	-	100	99.014	Equus_caballus
ENSSSCG00000034927	-	64	64.626	ENSEEUG00000000726	-	64	64.626	Erinaceus_europaeus
ENSSSCG00000034927	-	87	98.120	ENSEEUG00000006148	-	100	98.120	Erinaceus_europaeus
ENSSSCG00000034927	-	99	75.626	ENSELUG00000022257	eif3c	92	83.250	Esox_lucius
ENSSSCG00000034927	-	100	98.905	ENSFCAG00000015782	-	100	98.905	Felis_catus
ENSSSCG00000034927	-	100	98.028	ENSFDAG00000003588	-	100	98.028	Fukomys_damarensis
ENSSSCG00000034927	-	99	76.000	ENSFHEG00000014154	EIF3C	98	76.004	Fundulus_heteroclitus
ENSSSCG00000034927	-	97	74.888	ENSGMOG00000016885	eif3c	99	75.448	Gadus_morhua
ENSSSCG00000034927	-	96	76.417	ENSGACG00000007652	eif3c	100	75.245	Gasterosteus_aculeatus
ENSSSCG00000034927	-	92	83.471	ENSGAGG00000006666	-	100	82.645	Gopherus_agassizii
ENSSSCG00000034927	-	99	96.150	ENSGGOG00000026919	EIF3C	100	98.407	Gorilla_gorilla
ENSSSCG00000034927	-	54	96.911	ENSGGOG00000022677	-	100	96.911	Gorilla_gorilla
ENSSSCG00000034927	-	100	98.138	ENSHGLG00000011445	EIF3C	100	98.138	Heterocephalus_glaber_female
ENSSSCG00000034927	-	100	98.138	ENSHGLG00100000217	EIF3C	100	98.138	Heterocephalus_glaber_male
ENSSSCG00000034927	-	99	76.004	ENSHCOG00000019694	eif3c	98	75.791	Hippocampus_comes
ENSSSCG00000034927	-	99	75.353	ENSIPUG00000016878	eif3c	98	76.061	Ictalurus_punctatus
ENSSSCG00000034927	-	100	98.795	ENSSTOG00000021278	-	100	98.795	Ictidomys_tridecemlineatus
ENSSSCG00000034927	-	100	97.590	ENSJJAG00000012722	Eif3c	100	97.590	Jaculus_jaculus
ENSSSCG00000034927	-	99	76.096	ENSKMAG00000021662	eif3c	97	75.353	Kryptolebias_marmoratus
ENSSSCG00000034927	-	99	75.249	ENSLBEG00000023370	eif3c	99	74.002	Labrus_bergylta
ENSSSCG00000034927	-	100	78.626	ENSLACG00000000770	eif3c	100	80.196	Latimeria_chalumnae
ENSSSCG00000034927	-	100	98.138	ENSLAFG00000027426	-	100	98.138	Loxodonta_africana
ENSSSCG00000034927	-	100	98.576	ENSMFAG00000041930	-	100	98.576	Macaca_fascicularis
ENSSSCG00000034927	-	100	98.576	ENSMMUG00000011798	-	100	98.576	Macaca_mulatta
ENSSSCG00000034927	-	100	98.576	ENSMNEG00000023915	-	100	98.576	Macaca_nemestrina
ENSSSCG00000034927	-	100	98.576	ENSMLEG00000027529	-	100	98.576	Mandrillus_leucophaeus
ENSSSCG00000034927	-	99	78.241	ENSMAMG00000012512	eif3c	95	84.333	Mastacembelus_armatus
ENSSSCG00000034927	-	84	83.140	ENSMZEG00005013699	eif3c	89	83.140	Maylandia_zebra
ENSSSCG00000034927	-	84	80.456	ENSMZEG00005013685	eif3c	92	80.456	Maylandia_zebra
ENSSSCG00000034927	-	100	97.590	ENSMAUG00000010621	Eif3c	100	97.590	Mesocricetus_auratus
ENSSSCG00000034927	-	100	98.686	ENSMICG00000036748	-	100	98.686	Microcebus_murinus
ENSSSCG00000034927	-	100	95.181	ENSMOCG00000004204	Eif3c	100	95.181	Microtus_ochrogaster
ENSSSCG00000034927	-	100	71.991	ENSMMOG00000001572	eif3c	72	82.508	Mola_mola
ENSSSCG00000034927	-	100	94.858	ENSMODG00000015579	-	100	94.858	Monodelphis_domestica
ENSSSCG00000034927	-	84	84.245	ENSMALG00000008907	eif3c	92	84.106	Monopterus_albus
ENSSSCG00000034927	-	100	97.043	MGP_CAROLIEiJ_G0030451	Eif3c	100	97.043	Mus_caroli
ENSSSCG00000034927	-	100	97.043	ENSMUSG00000030738	Eif3c	100	97.043	Mus_musculus
ENSSSCG00000034927	-	100	96.824	MGP_PahariEiJ_G0013661	Eif3c	100	96.824	Mus_pahari
ENSSSCG00000034927	-	100	97.043	MGP_SPRETEiJ_G0031565	Eif3c	100	97.043	Mus_spretus
ENSSSCG00000034927	-	96	98.409	ENSMPUG00000012732	-	100	98.409	Mustela_putorius_furo
ENSSSCG00000034927	-	100	97.700	ENSMLUG00000015558	-	100	97.700	Myotis_lucifugus
ENSSSCG00000034927	-	100	98.248	ENSNGAG00000007177	-	100	98.248	Nannospalax_galili
ENSSSCG00000034927	-	93	87.273	ENSNGAG00000010901	-	98	87.273	Nannospalax_galili
ENSSSCG00000034927	-	100	83.279	ENSNLEG00000001425	-	91	93.333	Nomascus_leucogenys
ENSSSCG00000034927	-	89	62.420	ENSMEUG00000005317	-	95	72.414	Notamacropus_eugenii
ENSSSCG00000034927	-	100	77.705	ENSMEUG00000009939	-	99	77.729	Notamacropus_eugenii
ENSSSCG00000034927	-	100	98.248	ENSOPRG00000000931	-	100	98.248	Ochotona_princeps
ENSSSCG00000034927	-	100	98.357	ENSODEG00000013508	-	100	98.357	Octodon_degus
ENSSSCG00000034927	-	66	62.871	ENSONIG00000011434	eif3c	99	62.871	Oreochromis_niloticus
ENSSSCG00000034927	-	100	91.272	ENSOANG00000011410	-	100	91.272	Ornithorhynchus_anatinus
ENSSSCG00000034927	-	100	98.795	ENSOCUG00000022489	-	100	98.795	Oryctolagus_cuniculus
ENSSSCG00000034927	-	99	75.166	ENSORLG00000006318	eif3c	95	74.342	Oryzias_latipes
ENSSSCG00000034927	-	96	82.283	ENSORLG00020015713	eif3c	91	82.881	Oryzias_latipes_hni
ENSSSCG00000034927	-	99	75.277	ENSORLG00015013772	eif3c	100	71.670	Oryzias_latipes_hsok
ENSSSCG00000034927	-	100	74.651	ENSOMEG00000020450	eif3c	100	74.114	Oryzias_melastigma
ENSSSCG00000034927	-	100	98.467	ENSOGAG00000012737	-	100	98.467	Otolemur_garnettii
ENSSSCG00000034927	-	100	98.576	ENSOARG00000002892	-	100	98.576	Ovis_aries
ENSSSCG00000034927	-	100	98.905	ENSPPRG00000012336	-	100	98.905	Panthera_pardus
ENSSSCG00000034927	-	100	98.905	ENSPTIG00000011712	-	100	98.905	Panthera_tigris_altaica
ENSSSCG00000034927	-	100	98.576	ENSPANG00000021151	-	100	98.576	Papio_anubis
ENSSSCG00000034927	-	99	76.580	ENSPKIG00000002049	eif3c	98	76.797	Paramormyrops_kingsleyae
ENSSSCG00000034927	-	89	84.411	ENSPMGG00000005409	eif3c	94	84.411	Periophthalmus_magnuspinnatus
ENSSSCG00000034927	-	100	96.057	ENSPEMG00000010899	Eif3c	100	96.057	Peromyscus_maniculatus_bairdii
ENSSSCG00000034927	-	100	94.967	ENSPCIG00000025206	-	100	94.967	Phascolarctos_cinereus
ENSSSCG00000034927	-	99	75.570	ENSPFOG00000004476	eif3c	100	72.928	Poecilia_formosa
ENSSSCG00000034927	-	100	71.616	ENSPLAG00000017480	eif3c	98	74.824	Poecilia_latipinna
ENSSSCG00000034927	-	99	76.196	ENSPMEG00000019512	eif3c	98	74.864	Poecilia_mexicana
ENSSSCG00000034927	-	100	95.400	ENSPPYG00000007227	-	100	95.400	Pongo_abelii
ENSSSCG00000034927	-	66	98.669	ENSPCAG00000012710	-	100	98.669	Procavia_capensis
ENSSSCG00000034927	-	100	98.905	ENSPCOG00000019289	-	100	98.905	Propithecus_coquereli
ENSSSCG00000034927	-	100	98.576	ENSPVAG00000005804	-	100	98.576	Pteropus_vampyrus
ENSSSCG00000034927	-	51	80.000	ENSPNYG00000016530	eif3c	81	80.000	Pundamilia_nyererei
ENSSSCG00000034927	-	99	76.477	ENSPNAG00000024040	eif3c	99	76.721	Pygocentrus_nattereri
ENSSSCG00000034927	-	100	96.933	ENSRNOG00000018761	Eif3c	100	96.933	Rattus_norvegicus
ENSSSCG00000034927	-	97	98.528	ENSRBIG00000044009	-	98	96.094	Rhinopithecus_bieti
ENSSSCG00000034927	-	100	98.576	ENSRROG00000043626	-	100	98.576	Rhinopithecus_roxellana
ENSSSCG00000034927	-	75	31.365	YMR309C	-	82	31.330	Saccharomyces_cerevisiae
ENSSSCG00000034927	-	100	98.248	ENSSBOG00000032155	-	100	98.248	Saimiri_boliviensis_boliviensis
ENSSSCG00000034927	-	96	94.451	ENSSHAG00000011808	-	100	94.451	Sarcophilus_harrisii
ENSSSCG00000034927	-	99	75.738	ENSSFOG00015021823	eif3c	98	75.930	Scleropages_formosus
ENSSSCG00000034927	-	97	76.629	ENSSMAG00000016638	eif3c	97	76.517	Scophthalmus_maximus
ENSSSCG00000034927	-	97	79.356	ENSSDUG00000023117	eif3c	98	76.035	Seriola_dumerili
ENSSSCG00000034927	-	99	75.922	ENSSLDG00000009706	eif3c	93	83.333	Seriola_lalandi_dorsalis
ENSSSCG00000034927	-	100	83.607	ENSSPUG00000016470	-	100	84.372	Sphenodon_punctatus
ENSSSCG00000034927	-	100	75.758	ENSSPAG00000000426	eif3c	100	75.761	Stegastes_partitus
ENSSSCG00000034927	-	99	74.169	ENSTRUG00000008951	eif3c	99	74.491	Takifugu_rubripes
ENSSSCG00000034927	-	100	74.022	ENSTNIG00000015210	eif3c	100	74.022	Tetraodon_nigroviridis
ENSSSCG00000034927	-	100	98.905	ENSTTRG00000005880	-	100	98.905	Tursiops_truncatus
ENSSSCG00000034927	-	72	99.084	ENSUAMG00000001127	-	91	99.682	Ursus_americanus
ENSSSCG00000034927	-	100	99.014	ENSUMAG00000010927	-	100	99.014	Ursus_maritimus
ENSSSCG00000034927	-	100	97.590	ENSVVUG00000025970	-	100	97.590	Vulpes_vulpes
ENSSSCG00000034927	-	100	78.402	ENSXETG00000002941	eif3c	100	78.510	Xenopus_tropicalis
ENSSSCG00000034927	-	100	75.486	ENSXMAG00000013796	eif3c	100	74.622	Xiphophorus_maculatus