EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000035501 (Gene tree)
Gene ID: 100620418
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 58794 bases
Position: chr15:118629147-118687940
Accession: 100620418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000051674	ResIII	PF04851.15	7.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000055777	SMARCAL1-201	2541	XM_021076244	ENSSSCP00000051674	846 (aa)	XP_020931903	A0A287B6H5

Gene Model

Click here to download ENSSSCG00000035501's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000035501's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000035501	SMARCAL1	99	71.826	ENSG00000138375	SMARCAL1	99	80.000	Homo_sapiens
ENSSSCG00000035501	SMARCAL1	76	58.032	ENSAPOG00000020156	SMARCAL1	76	57.971	Acanthochromis_polyacanthus
ENSSSCG00000035501	SMARCAL1	73	59.484	ENSACIG00000001500	smarcal1	85	59.729	Amphilophus_citrinellus
ENSSSCG00000035501	SMARCAL1	76	58.285	ENSAOCG00000014266	SMARCAL1	77	58.140	Amphiprion_ocellaris
ENSSSCG00000035501	SMARCAL1	76	58.250	ENSAPEG00000015861	SMARCAL1	76	57.819	Amphiprion_percula
ENSSSCG00000035501	SMARCAL1	76	58.237	ENSATEG00000020624	SMARCAL1	76	58.177	Anabas_testudineus
ENSSSCG00000035501	SMARCAL1	74	63.704	ENSAPLG00000009864	SMARCAL1	71	62.899	Anas_platyrhynchos
ENSSSCG00000035501	SMARCAL1	75	63.650	ENSACAG00000004612	SMARCAL1	70	63.650	Anolis_carolinensis
ENSSSCG00000035501	SMARCAL1	76	59.222	ENSACLG00000015990	SMARCAL1	91	52.644	Astatotilapia_calliptera
ENSSSCG00000035501	SMARCAL1	76	60.058	ENSAMXG00000003350	smarcal1	77	59.621	Astyanax_mexicanus
ENSSSCG00000035501	SMARCAL1	98	63.200	ENSCPBG00000013599	SMARCAL1	94	64.356	Chrysemys_picta_bellii
ENSSSCG00000035501	SMARCAL1	70	47.377	ENSCING00000009308	-	99	47.087	Ciona_intestinalis
ENSSSCG00000035501	SMARCAL1	76	57.720	ENSCSEG00000010785	SMARCAL1	92	52.264	Cynoglossus_semilaevis
ENSSSCG00000035501	SMARCAL1	80	55.956	ENSCVAG00000018780	SMARCAL1	79	56.094	Cyprinodon_variegatus
ENSSSCG00000035501	SMARCAL1	57	49.810	ENSEBUG00000011906	SMARCAL1	73	48.859	Eptatretus_burgeri
ENSSSCG00000035501	SMARCAL1	75	59.064	ENSELUG00000010440	-	65	58.944	Esox_lucius
ENSSSCG00000035501	SMARCAL1	77	61.777	ENSFALG00000003981	SMARCAL1	73	61.777	Ficedula_albicollis
ENSSSCG00000035501	SMARCAL1	75	56.515	ENSFHEG00000008380	SMARCAL1	78	55.347	Fundulus_heteroclitus
ENSSSCG00000035501	SMARCAL1	52	63.636	ENSGMOG00000010034	smarcal1	86	63.636	Gadus_morhua
ENSSSCG00000035501	SMARCAL1	75	63.971	ENSGALG00000011475	RPL37A	70	64.118	Gallus_gallus
ENSSSCG00000035501	SMARCAL1	69	61.495	ENSGACG00000006073	SMARCAL1	100	62.082	Gasterosteus_aculeatus
ENSSSCG00000035501	SMARCAL1	74	63.081	ENSGAGG00000015660	SMARCAL1	74	63.676	Gopherus_agassizii
ENSSSCG00000035501	SMARCAL1	76	59.222	ENSHBUG00000002973	smarcal1	77	59.222	Haplochromis_burtoni
ENSSSCG00000035501	SMARCAL1	75	58.971	ENSHCOG00000017921	smarcal1	81	59.118	Hippocampus_comes
ENSSSCG00000035501	SMARCAL1	75	57.312	ENSKMAG00000012023	SMARCAL1	78	57.164	Kryptolebias_marmoratus
ENSSSCG00000035501	SMARCAL1	72	56.662	ENSLBEG00000022915	smarcal1	85	56.355	Labrus_bergylta
ENSSSCG00000035501	SMARCAL1	70	58.621	ENSLBEG00000003493	smarcal1	75	58.307	Labrus_bergylta
ENSSSCG00000035501	SMARCAL1	76	57.205	ENSLACG00000010974	SMARCAL1	72	56.566	Latimeria_chalumnae
ENSSSCG00000035501	SMARCAL1	72	61.846	ENSLOCG00000009637	smarcal1	77	61.787	Lepisosteus_oculatus
ENSSSCG00000035501	SMARCAL1	77	57.872	ENSMAMG00000000828	SMARCAL1	78	57.580	Mastacembelus_armatus
ENSSSCG00000035501	SMARCAL1	76	59.078	ENSMZEG00005007660	SMARCAL1	91	52.524	Maylandia_zebra
ENSSSCG00000035501	SMARCAL1	76	63.808	ENSMGAG00000011658	SMARCAL1	73	63.610	Meleagris_gallopavo
ENSSSCG00000035501	SMARCAL1	72	56.192	ENSMMOG00000003842	smarcal1	80	55.882	Mola_mola
ENSSSCG00000035501	SMARCAL1	99	57.866	ENSMODG00000015544	SMARCAL1	95	57.866	Monodelphis_domestica
ENSSSCG00000035501	SMARCAL1	73	59.366	ENSNBRG00000016273	smarcal1	85	58.967	Neolamprologus_brichardi
ENSSSCG00000035501	SMARCAL1	95	59.001	ENSMEUG00000004395	SMARCAL1	98	59.698	Notamacropus_eugenii
ENSSSCG00000035501	SMARCAL1	89	52.443	ENSONIG00000009036	smarcal1	99	60.709	Oreochromis_niloticus
ENSSSCG00000035501	SMARCAL1	76	57.164	ENSORLG00000016455	SMARCAL1	77	57.164	Oryzias_latipes
ENSSSCG00000035501	SMARCAL1	76	57.308	ENSORLG00020001610	SMARCAL1	77	57.308	Oryzias_latipes_hni
ENSSSCG00000035501	SMARCAL1	76	57.308	ENSORLG00015001865	SMARCAL1	77	57.308	Oryzias_latipes_hsok
ENSSSCG00000035501	SMARCAL1	77	56.304	ENSOMEG00000001845	smarcal1	81	56.304	Oryzias_melastigma
ENSSSCG00000035501	SMARCAL1	74	57.933	ENSPMGG00000019092	SMARCAL1	77	58.102	Periophthalmus_magnuspinnatus
ENSSSCG00000035501	SMARCAL1	97	57.650	ENSPCIG00000022514	SMARCAL1	98	57.545	Phascolarctos_cinereus
ENSSSCG00000035501	SMARCAL1	76	58.297	ENSPFOG00000000560	SMARCAL1	77	58.041	Poecilia_formosa
ENSSSCG00000035501	SMARCAL1	76	58.737	ENSPMEG00000018146	SMARCAL1	77	58.394	Poecilia_mexicana
ENSSSCG00000035501	SMARCAL1	50	61.472	ENSPREG00000009591	SMARCAL1	78	64.569	Poecilia_reticulata
ENSSSCG00000035501	SMARCAL1	76	61.047	ENSPNAG00000014900	smarcal1	74	60.844	Pygocentrus_nattereri
ENSSSCG00000035501	SMARCAL1	99	54.415	ENSSHAG00000013538	SMARCAL1	94	54.415	Sarcophilus_harrisii
ENSSSCG00000035501	SMARCAL1	76	57.349	ENSSMAG00000010427	SMARCAL1	75	57.204	Scophthalmus_maximus
ENSSSCG00000035501	SMARCAL1	76	57.842	ENSSDUG00000017470	SMARCAL1	74	57.742	Seriola_dumerili
ENSSSCG00000035501	SMARCAL1	76	57.266	ENSSLDG00000007224	SMARCAL1	75	57.164	Seriola_lalandi_dorsalis
ENSSSCG00000035501	SMARCAL1	78	62.587	ENSSPUG00000015369	SMARCAL1	72	62.517	Sphenodon_punctatus
ENSSSCG00000035501	SMARCAL1	72	59.168	ENSSPAG00000003742	smarcal1	83	59.014	Stegastes_partitus
ENSSSCG00000035501	SMARCAL1	75	64.053	ENSTGUG00000005079	SMARCAL1	99	63.490	Taeniopygia_guttata
ENSSSCG00000035501	SMARCAL1	76	54.876	ENSTRUG00000010701	SMARCAL1	79	54.876	Takifugu_rubripes
ENSSSCG00000035501	SMARCAL1	99	69.541	ENSTTRG00000009001	SMARCAL1	94	69.541	Tursiops_truncatus
ENSSSCG00000035501	SMARCAL1	97	53.013	ENSXETG00000000465	smarcal1	93	52.514	Xenopus_tropicalis